RNA–Protein interactions for RNA: ENST00000524288.1

SKP1-213, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 1 (best)

Gene SKP1, Length 732 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-213ENST00000524288 NCAM1P13591 858 aa7.9□□□□□ -1.14
SKP1-213ENST00000524288 ATP2A2P16615 1042 aaKnown RBP7.9□□□□□ -1.14
SKP1-213ENST00000524288 PRR5P85299 388 aa7.9□□□□□ -1.14
SKP1-213ENST00000524288 NFIXQ14938 502 aa7.9□□□□□ -1.14
SKP1-213ENST00000524288 SLC9A5Q14940 896 aa7.9□□□□□ -1.14
SKP1-213ENST00000524288 TTF1Q15361 905 aaPredicted RBP7.9□□□□□ -1.14
SKP1-213ENST00000524288 C2orf69Q8N8R5 385 aa7.9□□□□□ -1.14
SKP1-213ENST00000524288 CDIP1Q9H305 208 aa7.9□□□□□ -1.14
SKP1-213ENST00000524288 FUCA1P04066 466 aa7.89□□□□□ -1.15
SKP1-213ENST00000524288 PDE6AP16499 860 aa7.89□□□□□ -1.15
SKP1-213ENST00000524288 HDGFL2Q7Z4V5 671 aaPredicted RBP7.89□□□□□ -1.15
SKP1-213ENST00000524288 NECAB2Q7Z6G3 386 aa7.89□□□□□ -1.15
SKP1-213ENST00000524288 CNTD1Q8N815 330 aa7.89□□□□□ -1.15
SKP1-213ENST00000524288 TRMT2BQ96GJ1 504 aaKnown RBP7.89□□□□□ -1.15
SKP1-213ENST00000524288 PEX11GQ96HA9 241 aa7.89□□□□□ -1.15
SKP1-213ENST00000524288 FBLN5Q9UBX5 448 aa7.89□□□□□ -1.15
SKP1-213ENST00000524288 B4GALT6Q9UBX8 382 aa7.89□□□□□ -1.15
SKP1-213ENST00000524288 TRHDEQ9UKU6 1024 aa7.89□□□□□ -1.15
SKP1-213ENST00000524288 APOBEC2Q9Y235 224 aaKnown RBP7.89□□□□□ -1.15
SKP1-213ENST00000524288 FAN1Q9Y2M0 1017 aa7.89□□□□□ -1.15
SKP1-213ENST00000524288 EID1Q9Y6B2 187 aa7.89□□□□□ -1.15
SKP1-213ENST00000524288 ZC3H12DA2A288 527 aaKnown RBP7.88□□□□□ -1.15
SKP1-213ENST00000524288 ZBTB7AO95365 584 aa7.88□□□□□ -1.15
SKP1-213ENST00000524288 GNAT1P11488 350 aa7.88□□□□□ -1.15
SKP1-213ENST00000524288 MECP2P51608 486 aaKnown RBP7.88□□□□□ -1.15
SKP1-213ENST00000524288 JAM2P57087 298 aa7.88□□□□□ -1.15
SKP1-213ENST00000524288 CRY1Q16526 586 aa7.88□□□□□ -1.15
SKP1-213ENST00000524288 ATP13A4Q4VNC1 1196 aa7.88□□□□□ -1.15
SKP1-213ENST00000524288 IQSEC1Q6DN90 963 aa7.88□□□□□ -1.15
SKP1-213ENST00000524288 FSTL4Q6MZW2 842 aa7.88□□□□□ -1.15
SKP1-213ENST00000524288 C16orf59Q7L2K0 433 aa7.88□□□□□ -1.15
SKP1-213ENST00000524288 OSTM1Q86WC4 334 aa7.88□□□□□ -1.15
SKP1-213ENST00000524288 ORAI3Q9BRQ5 295 aa7.88□□□□□ -1.15
SKP1-213ENST00000524288 MTA3Q9BTC8 594 aa7.88□□□□□ -1.15
SKP1-213ENST00000524288 VTA1Q9NP79 307 aa7.88□□□□□ -1.15
SKP1-213ENST00000524288 EMC7Q9NPA0 242 aa7.88□□□□□ -1.15
SKP1-213ENST00000524288 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP7.88□□□□□ -1.15
SKP1-213ENST00000524288 HCFC2Q9Y5Z7 792 aa7.88□□□□□ -1.15
SKP1-213ENST00000524288 C22orf46C9J442 243 aa7.87□□□□□ -1.15
SKP1-213ENST00000524288 ZEB2O60315 1214 aa7.87□□□□□ -1.15
SKP1-213ENST00000524288 PRKD3O94806 890 aa7.87□□□□□ -1.15
SKP1-213ENST00000524288 LIMS1P48059 325 aa7.87□□□□□ -1.15
SKP1-213ENST00000524288 KPNA1P52294 538 aaPredicted RBP7.87□□□□□ -1.15
SKP1-213ENST00000524288 GTF2A2P52657 109 aa7.87□□□□□ -1.15
SKP1-213ENST00000524288 FOXO4P98177 505 aa7.87□□□□□ -1.15
SKP1-213ENST00000524288 ERICH6BQ5W0A0 696 aa7.87□□□□□ -1.15
SKP1-213ENST00000524288 KIF18BQ86Y91 864 aa7.87□□□□□ -1.15
SKP1-213ENST00000524288 CXorf38Q8TB03 319 aa7.87□□□□□ -1.15
SKP1-213ENST00000524288 USP33Q8TEY7 942 aa7.87□□□□□ -1.15
SKP1-213ENST00000524288 ALG3Q92685 438 aa7.87□□□□□ -1.15
SKP1-213ENST00000524288 TSR2Q969E8 191 aaKnown RBP7.87□□□□□ -1.15
SKP1-213ENST00000524288 YIPF4Q9BSR8 244 aa7.87□□□□□ -1.15
SKP1-213ENST00000524288 OTOL1A6NHN0 477 aaPredicted RBP7.86□□□□□ -1.15
SKP1-213ENST00000524288 WNT9AO14904 365 aa7.86□□□□□ -1.15
SKP1-213ENST00000524288 GSTA4O15217 222 aa7.86□□□□□ -1.15
SKP1-213ENST00000524288 NKRFO15226 690 aaKnown RBP eCLIP7.86□□□□□ -1.151e-7■□□□□ 8.2
SKP1-213ENST00000524288 ASGR2P07307 311 aa7.86□□□□□ -1.15
SKP1-213ENST00000524288 HTRA3P83110 453 aa7.86□□□□□ -1.15
SKP1-213ENST00000524288 LRRC41Q15345 812 aa7.86□□□□□ -1.15
SKP1-213ENST00000524288 B3GNT8Q7Z7M8 397 aa7.86□□□□□ -1.15
SKP1-213ENST00000524288 PTRH1Q86Y79 214 aaKnown RBP7.86□□□□□ -1.15
SKP1-213ENST00000524288 CPA5Q8WXQ8 436 aa7.86□□□□□ -1.15
SKP1-213ENST00000524288 SMURF1Q9HCE7 757 aa7.86□□□□□ -1.15
SKP1-213ENST00000524288 OXSMQ9NWU1 459 aa7.86□□□□□ -1.15
SKP1-213ENST00000524288 TCEAL9Q9UHQ7 104 aa7.86□□□□□ -1.15
SKP1-213ENST00000524288 PMF1-BGLAPU3KQ54 211 aa7.86□□□□□ -1.15
SKP1-213ENST00000524288 TCRBV5S4A2TA0A5A2 114 aa7.85□□□□□ -1.15
SKP1-213ENST00000524288 H7BY64 318 aa7.85□□□□□ -1.15
SKP1-213ENST00000524288 ZNF561-AS1K7EIQ3 104 aa7.85□□□□□ -1.15
SKP1-213ENST00000524288 FFAR3O14843 346 aa7.85□□□□□ -1.15
SKP1-213ENST00000524288 FOXD2O60548 495 aaPredicted RBP7.85□□□□□ -1.15
SKP1-213ENST00000524288 AMY2AP04746 511 aa7.85□□□□□ -1.15
SKP1-213ENST00000524288 ATF2P15336 505 aa7.85□□□□□ -1.15
SKP1-213ENST00000524288 SYN1P17600 705 aa7.85□□□□□ -1.15
SKP1-213ENST00000524288 AMY2BP19961 511 aa7.85□□□□□ -1.15
SKP1-213ENST00000524288 LSSP48449 732 aa7.85□□□□□ -1.15
SKP1-213ENST00000524288 ABCB5Q2M3G0 1257 aa7.85□□□□□ -1.15
SKP1-213ENST00000524288 VMACQ2NL98 169 aa7.85□□□□□ -1.15
SKP1-213ENST00000524288 CREB3L3Q68CJ9 461 aa7.85□□□□□ -1.15
SKP1-213ENST00000524288 ARHGAP36Q6ZRI8 547 aa7.85□□□□□ -1.15
SKP1-213ENST00000524288 WDR75Q8IWA0 830 aaKnown RBP7.85□□□□□ -1.15
SKP1-213ENST00000524288 TP53I13Q8NBR0 393 aaPredicted RBP7.85□□□□□ -1.15
SKP1-213ENST00000524288 PIP4K2CQ8TBX8 421 aa7.85□□□□□ -1.15
SKP1-213ENST00000524288 FNIP1Q8TF40 1166 aa7.85□□□□□ -1.15
SKP1-213ENST00000524288 TEPSINQ96N21 525 aa7.85□□□□□ -1.15
SKP1-213ENST00000524288 COA3Q9Y2R0 106 aaPredicted RBP7.85□□□□□ -1.15
SKP1-213ENST00000524288 MCL1Q07820 350 aa7.84□□□□□ -1.15
SKP1-213ENST00000524288 VWA3BQ502W6 1294 aa7.84□□□□□ -1.15
SKP1-213ENST00000524288 HSP90AB2PQ58FF8 381 aa7.84□□□□□ -1.15
SKP1-213ENST00000524288 CPZQ66K79 652 aa7.84□□□□□ -1.15
SKP1-213ENST00000524288 FRMD5Q7Z6J6 570 aa7.84□□□□□ -1.15
SKP1-213ENST00000524288 SAPCD2Q86UD0 394 aa7.84□□□□□ -1.15
SKP1-213ENST00000524288 C11orf74Q86VG3 221 aa7.84□□□□□ -1.15
SKP1-213ENST00000524288 RBM12BQ8IXT5 1001 aaKnown RBP7.84□□□□□ -1.15
SKP1-213ENST00000524288 PLEKHO2Q8TD55 490 aa7.84□□□□□ -1.15
SKP1-213ENST00000524288 CD244Q9BZW8 370 aa7.84□□□□□ -1.15
SKP1-213ENST00000524288 PUS7LQ9H0K6 701 aaKnown RBP7.84□□□□□ -1.15
SKP1-213ENST00000524288 MS4A5Q9H3V2 200 aa7.84□□□□□ -1.15
SKP1-213ENST00000524288 SLC12A8A0AV02 714 aa7.83□□□□□ -1.16
SKP1-213ENST00000524288 SHTN1A0MZ66 631 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms