RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 PRDM5Q9NQX1 630 aaPredicted RBP16.08■□□□□ 0.16
NUP54-216ENST00000514901 NOD1Q9Y239 953 aa16.08■□□□□ 0.16
NUP54-216ENST00000514901 MAFBQ9Y5Q3 323 aaPredicted RBP16.08■□□□□ 0.16
NUP54-216ENST00000514901 NRCAMQ92823 1304 aa16.08■□□□□ 0.16
NUP54-216ENST00000514901 C17orf102A2RUQ5 167 aa16.07■□□□□ 0.16
NUP54-216ENST00000514901 RRN3P2A6NIE6 340 aa16.07■□□□□ 0.16
NUP54-216ENST00000514901 H0YGN5 161 aa16.07■□□□□ 0.16
NUP54-216ENST00000514901 STX6O43752 255 aa16.07■□□□□ 0.16
NUP54-216ENST00000514901 HOXC8P31273 242 aa16.07■□□□□ 0.16
NUP54-216ENST00000514901 TOB1P50616 345 aaPredicted RBP16.07■□□□□ 0.16
NUP54-216ENST00000514901 PTGISQ16647 500 aa16.07■□□□□ 0.16
NUP54-216ENST00000514901 GDF6Q6KF10 455 aaPredicted RBP16.07■□□□□ 0.16
NUP54-216ENST00000514901 TRMT13Q9NUP7 481 aaKnown RBP16.07■□□□□ 0.16
NUP54-216ENST00000514901 VAV3Q9UKW4 847 aa16.07■□□□□ 0.16
NUP54-216ENST00000514901 TBX21Q9UL17 535 aa16.07■□□□□ 0.16
NUP54-216ENST00000514901 MYH9P35579 1960 aaKnown RBP16.07■□□□□ 0.16
NUP54-216ENST00000514901 TRIM43BA6NCK2 446 aa16.06■□□□□ 0.16
NUP54-216ENST00000514901 LAD1O00515 517 aa16.06■□□□□ 0.16
NUP54-216ENST00000514901 WNT7AO00755 349 aa16.06■□□□□ 0.16
NUP54-216ENST00000514901 CHMP2AO43633 222 aa16.06■□□□□ 0.16
NUP54-216ENST00000514901 HBP1O60381 514 aa16.06■□□□□ 0.16
NUP54-216ENST00000514901 DKC1O60832 514 aaKnown RBP eCLIP16.06■□□□□ 0.16
NUP54-216ENST00000514901 OR52Z1P0C646 297 aa16.06■□□□□ 0.16
NUP54-216ENST00000514901 MARK3P27448 753 aa16.06■□□□□ 0.16
NUP54-216ENST00000514901 PPFIA1Q13136 1202 aa16.06■□□□□ 0.16
NUP54-216ENST00000514901 EPHA7Q15375 998 aa16.06■□□□□ 0.16
NUP54-216ENST00000514901 PRPF38BQ5VTL8 546 aaKnown RBP16.06■□□□□ 0.16
NUP54-216ENST00000514901 CCDC60Q8IWA6 550 aaPredicted RBP16.06■□□□□ 0.16
NUP54-216ENST00000514901 ATP8B4Q8TF62 1192 aa16.06■□□□□ 0.16
NUP54-216ENST00000514901 ATP6V0A1Q93050 837 aa16.06■□□□□ 0.16
NUP54-216ENST00000514901 TRIM43Q96BQ3 446 aaPredicted RBP16.06■□□□□ 0.16
NUP54-216ENST00000514901 FAM167AQ96KS9 214 aa16.06■□□□□ 0.16
NUP54-216ENST00000514901 LBHD1Q9BQE6 289 aaPredicted RBP16.06■□□□□ 0.16
NUP54-216ENST00000514901 ZSCAN16Q9H4T2 348 aaPredicted RBP16.06■□□□□ 0.16
NUP54-216ENST00000514901 TTC12Q9H892 705 aaPredicted RBP16.06■□□□□ 0.16
NUP54-216ENST00000514901 GABBR1Q9UBS5 961 aa16.06■□□□□ 0.16
NUP54-216ENST00000514901 ZMYND8Q9ULU4 1186 aaPredicted RBP16.06■□□□□ 0.16
NUP54-216ENST00000514901 POTEB3A0JP26 581 aa16.05■□□□□ 0.16
NUP54-216ENST00000514901 TIMP1P01033 207 aa16.05■□□□□ 0.16
NUP54-216ENST00000514901 RAG1P15918 1043 aa16.05■□□□□ 0.16
NUP54-216ENST00000514901 SYN1P17600 705 aa16.05■□□□□ 0.16
NUP54-216ENST00000514901 TXKP42681 527 aa16.05■□□□□ 0.16
NUP54-216ENST00000514901 PTK7Q13308 1070 aa16.05■□□□□ 0.16
NUP54-216ENST00000514901 BFSP2Q13515 415 aa16.05■□□□□ 0.16
NUP54-216ENST00000514901 PLCB4Q15147 1175 aa16.05■□□□□ 0.16
NUP54-216ENST00000514901 POTEBQ6S5H4 581 aa16.05■□□□□ 0.16
NUP54-216ENST00000514901 SH3RF1Q7Z6J0 888 aa16.05■□□□□ 0.16
NUP54-216ENST00000514901 CKAP2LQ8IYA6 745 aa16.05■□□□□ 0.16
NUP54-216ENST00000514901 CCDC155Q8N6L0 562 aa16.05■□□□□ 0.16
NUP54-216ENST00000514901 CAGE1Q8TC20 777 aa16.05■□□□□ 0.16
NUP54-216ENST00000514901 BBXQ8WY36 941 aaPredicted RBP16.05■□□□□ 0.16
NUP54-216ENST00000514901 TMEM60Q9H2L4 133 aa16.05■□□□□ 0.16
NUP54-216ENST00000514901 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.05■□□□□ 0.16
NUP54-216ENST00000514901 NRBP2Q9NSY0 501 aa16.05■□□□□ 0.16
NUP54-216ENST00000514901 SETD4Q9NVD3 440 aa16.05■□□□□ 0.16
NUP54-216ENST00000514901 TRPC6Q9Y210 931 aa16.05■□□□□ 0.16
NUP54-216ENST00000514901 MTMR6Q9Y217 621 aa16.05■□□□□ 0.16
NUP54-216ENST00000514901 PCDHB6Q9Y5E3 794 aa16.05■□□□□ 0.16
NUP54-216ENST00000514901 IGSF9BQ9UPX0 1349 aa16.04■□□□□ 0.16
NUP54-216ENST00000514901 BMP15O95972 392 aa16.04■□□□□ 0.16
NUP54-216ENST00000514901 RPLP2P05387 115 aaKnown RBP16.04■□□□□ 0.16
NUP54-216ENST00000514901 P4HBP07237 508 aaKnown RBP16.04■□□□□ 0.16
NUP54-216ENST00000514901 PSMC5P62195 406 aa16.04■□□□□ 0.16
NUP54-216ENST00000514901 SPIRE1Q08AE8 756 aa16.04■□□□□ 0.16
NUP54-216ENST00000514901 PTGDRQ13258 359 aa16.04■□□□□ 0.16
NUP54-216ENST00000514901 GRIK4Q16099 956 aa16.04■□□□□ 0.16
NUP54-216ENST00000514901 TMEM266Q2M3C6 531 aa16.04■□□□□ 0.16
NUP54-216ENST00000514901 ZNF484Q5JVG2 852 aa16.04■□□□□ 0.16
NUP54-216ENST00000514901 C4orf32Q8N8J7 132 aa16.04■□□□□ 0.16
NUP54-216ENST00000514901 RETREG2Q8NC44 543 aa16.04■□□□□ 0.16
NUP54-216ENST00000514901 PPP1R13LQ8WUF5 828 aa16.04■□□□□ 0.16
NUP54-216ENST00000514901 HIPK3Q9H422 1215 aa16.04■□□□□ 0.16
NUP54-216ENST00000514901 CEP131Q9UPN4 1083 aa16.04■□□□□ 0.16
NUP54-216ENST00000514901 TRIP12Q14669 1992 aaPredicted RBP16.04■□□□□ 0.16
NUP54-216ENST00000514901 COL1A2P08123 1366 aa16.03■□□□□ 0.16
NUP54-216ENST00000514901 EML1O00423 815 aa16.03■□□□□ 0.16
NUP54-216ENST00000514901 PITPNM1O00562 1244 aa16.03■□□□□ 0.16
NUP54-216ENST00000514901 CYP2C9P11712 490 aa16.03■□□□□ 0.16
NUP54-216ENST00000514901 INSRRP14616 1297 aa16.03■□□□□ 0.16
NUP54-216ENST00000514901 PRPHP41219 470 aa16.03■□□□□ 0.16
NUP54-216ENST00000514901 QARSP47897 775 aaKnown RBP16.03■□□□□ 0.16
NUP54-216ENST00000514901 ADAM17P78536 824 aa16.03■□□□□ 0.16
NUP54-216ENST00000514901 NBR1Q14596 966 aa16.03■□□□□ 0.16
NUP54-216ENST00000514901 NCAPH2Q6IBW4 605 aa16.03■□□□□ 0.16
NUP54-216ENST00000514901 MFSD5Q6N075 450 aa16.03■□□□□ 0.16
NUP54-216ENST00000514901 FERMT3Q86UX7 667 aa16.03■□□□□ 0.16
NUP54-216ENST00000514901 SERINC5Q86VE9 423 aa16.03■□□□□ 0.16
NUP54-216ENST00000514901 NEK9Q8TD19 979 aa16.03■□□□□ 0.16
NUP54-216ENST00000514901 LMBR1Q8WVP7 490 aa16.03■□□□□ 0.16
NUP54-216ENST00000514901 NOC4LQ9BVI4 516 aaKnown RBP16.03■□□□□ 0.16
NUP54-216ENST00000514901 RAB34Q9BZG1 259 aa16.03■□□□□ 0.16
NUP54-216ENST00000514901 STK24Q9Y6E0 443 aa16.03■□□□□ 0.16
NUP54-216ENST00000514901 MBLAC1A4D2B0 266 aaPredicted RBP16.02■□□□□ 0.16
NUP54-216ENST00000514901 TREHO43280 583 aa16.02■□□□□ 0.16
NUP54-216ENST00000514901 CAND2O75155 1236 aa16.02■□□□□ 0.16
NUP54-216ENST00000514901 ATP4AP20648 1035 aa16.02■□□□□ 0.16
NUP54-216ENST00000514901 TECP42680 631 aa16.02■□□□□ 0.16
NUP54-216ENST00000514901 FXR2P51116 673 aaKnown RBP eCLIP16.02■□□□□ 0.16
NUP54-216ENST00000514901 ZNF200P98182 395 aaPredicted RBP16.02■□□□□ 0.16
NUP54-216ENST00000514901 RBL2Q08999 1139 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms