RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 GRK7Q8WTQ7 553 aa9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 VPS37BQ9H9H4 285 aa9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 PLAGL2Q9UPG8 496 aa9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 SNX24Q9Y343 169 aa9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 ZBTB5O15062 677 aa9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 KRT14P02533 472 aa9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 NR3C1P04150 777 aa9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 HSPA6P17066 643 aa9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 CARSP49589 748 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 UBXN2AP68543 259 aa9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 PDIA5Q14554 519 aa9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 CDC37Q16543 378 aaPredicted RBP9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 HIBCHQ6NVY1 386 aaPredicted RBP9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 ADGRA1Q86SQ6 560 aa9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 RIOK1Q9BRS2 568 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 TEKT3Q9BXF9 490 aa9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 EHD2Q9NZN4 543 aa9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 CD2APQ9Y5K6 639 aa9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 MAP2K7O14733 419 aa9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 NTSR2O95665 410 aa9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 ZNF131P52739 623 aa9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 NAALADL2Q58DX5 795 aa9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 SPICE1Q8N0Z3 855 aa9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 CHURC1Q8WUH1 139 aa9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 PARVGQ9HBI0 331 aa9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 UBE2TQ9NPD8 197 aaPredicted RBP9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 DNAJC12Q9UKB3 198 aa9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 ODF2LQ9ULJ1 636 aa9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 RASGRF2O14827 1237 aa9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 ATF2P15336 505 aa9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 PPP2R2AP63151 447 aa9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 SF3B3Q15393 1217 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 KNOP1Q1ED39 458 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 ABCB5Q2M3G0 1257 aa9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 FAM133BQ5BKY9 247 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 ZIM3Q96PE6 472 aa9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 PSMD1Q99460 953 aa9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 MXD3Q9BW11 206 aa9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 PCIF1Q9H4Z3 704 aa9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 SDAD1Q9NVU7 687 aaKnown RBP eCLIP9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 FBXL5Q9UKA1 691 aa9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 NOC2LQ9Y3T9 749 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 RICTORQ6R327 1708 aa9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 MON2Q7Z3U7 1717 aa9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 POTEFA5A3E0 1075 aa9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 USP17L10C9JJH3 530 aa9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 TOM1O60784 492 aa9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 RPSAP08865 295 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 POTEIP0CG38 1075 aa9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 PMS1P54277 932 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 FAM102BQ5T8I3 360 aa9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 POTEGQ6S5H5 508 aa9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 POTEEQ6S8J3 1075 aa9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 SH3RF1Q7Z6J0 888 aa9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 KBTBD4Q9NVX7 518 aa9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 CAPN6Q9Y6Q1 641 aa9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 LMTK3Q96Q04 1460 aa9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 MEFVO15553 781 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 ECEL1O95672 775 aa9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 CTTNQ14247 550 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 NEDD9Q14511 834 aa9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 DCUN1D2Q6PH85 259 aa9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 LMNTD2Q8IXW0 634 aa9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 PPFIBP2Q8ND30 876 aa9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 ZNF653Q96CK0 615 aa9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 SMC6Q96SB8 1091 aa9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 EPN3Q9H201 632 aa9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 TYW1Q9NV66 732 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 MRPL11Q9Y3B7 192 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 CHUKO15111 745 aa9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 STAT3P40763 770 aa9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 MDH1P40925 334 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 SNAP25P60880 206 aa9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 SNX1Q13596 522 aa9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 SLMAPQ14BN4 828 aa9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 ZKSCAN8Q15776 578 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 FBXW10Q5XX13 1052 aa9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 DPH6Q7L8W6 267 aa9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 FBXO33Q7Z6M2 555 aa9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 CD209Q9NNX6 404 aa9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 AMACRQ9UHK6 382 aa9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 DAPK3O43293 454 aa9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 BBOX1O75936 387 aa9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 MMEP08473 750 aa9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 TNNI1P19237 187 aa9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 HOXA13P31271 388 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 C6orf118Q5T5N4 469 aa9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 PPP1R18Q6NYC8 613 aa9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 TMEM139Q8IV31 216 aa9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 PIGOQ8TEQ8 1089 aa9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 ARHGEF2Q92974 986 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 STMN2Q93045 179 aa9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 NACC1Q96RE7 527 aa9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 NARFQ9UHQ1 456 aa9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 DMGDHQ9UI17 866 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-216ENST00000512820 IFNB1P01574 187 aa9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 DLATP10515 647 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 EZH2Q15910 746 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 SGO2Q562F6 1265 aa9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 ADGRF4Q8IZF3 695 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms