RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 USP17L6PQ6QN14 398 aa17.72■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 POTEBQ6S5H4 581 aa17.72■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 NOX5Q96PH1 765 aa17.72■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 KANSL2Q9H9L4 492 aa17.72■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 MATR3P43243 847 aaKnown RBP eCLIP17.71■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 POLR2FP61218 127 aaKnown RBP17.71■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 SLC9C1Q4G0N8 1177 aa17.71■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 TDRD12Q587J7 1177 aaKnown RBP17.71■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 CC2D2BQ6DHV5 1058 aa17.71■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 CDC42EP5Q6NZY7 148 aa17.71■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 CCDC65Q8IXS2 484 aa17.71■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 NUCKS1Q9H1E3 243 aaKnown RBP17.71■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 BMP2KQ9NSY1 1161 aaPredicted RBP17.71■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 GJA3Q9Y6H8 435 aa17.71■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 FRMD3A2A2Y4 597 aa17.71■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 MED24O75448 989 aa17.71■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 IVLP07476 585 aa17.71■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 ARSHQ5FYA8 562 aa17.71■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 SND1Q7KZF4 910 aaKnown RBP eCLIP17.71■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 GPBP1Q86WP2 473 aa17.71■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 MBOAT7Q96N66 472 aa17.71■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 RNF181Q9P0P0 153 aa17.71■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 CYP3A7-CYP3A51PA0A087WV96 503 aa17.7■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 GNA14O95837 355 aa17.7■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 CYP3A7P24462 503 aa17.7■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 QRICH1Q2TAL8 776 aa17.7■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 HERC4Q5GLZ8 1057 aaPredicted RBP17.7■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 NIM1KQ8IY84 436 aa17.7■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 MS4A14Q96JA4 679 aa17.7■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 NAP1L4Q99733 375 aaKnown RBP17.7■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 EMILIN3Q9NT22 766 aa17.7■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 RBM12Q9NTZ6 932 aaKnown RBP17.7■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.7■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 ZNF541Q9H0D2 1346 aa17.7■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 SIPA1L1O43166 1804 aa17.7■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 MPHOSPH10O00566 681 aaKnown RBP17.7■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 STAT3P40763 770 aa17.7■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 SLC12A3P55017 1021 aa17.7■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 CCDC181Q5TID7 509 aa17.7■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 DPY19L2P1Q6NXN4 242 aa17.7■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 SRLQ86TD4 932 aa17.7■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 ZFPM1Q8IX07 1006 aa17.7■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 P2RX7Q99572 595 aaKnown RBP17.7■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 GANQ9H2C0 597 aa17.7■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 DNAJC18Q9H819 358 aa17.7■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 GOLGA6BA6NDN3 693 aa17.69■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 USP11P51784 963 aa17.69■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 CXCL9Q07325 125 aa17.69■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 NFIAQ12857 509 aa17.69■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 NAB2Q15742 525 aa17.69■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 APOBEC3HQ6NTF7 200 aaKnown RBP17.69■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 JDP2Q8WYK2 163 aa17.69■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 TBC1D5Q92609 795 aa17.69■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 ANO3Q9BYT9 981 aa17.69■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 STIM2Q9P246 746 aa17.69■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 SLC26A4O43511 780 aa17.68■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 KLRC1P26715 233 aa17.68■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 TNFRSF8P28908 595 aa17.68■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 PAFAH1B1P43034 410 aa17.68■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 SPIRE1Q08AE8 756 aa17.68■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 SLC18A3Q16572 532 aa17.68■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 SHROOM1Q2M3G4 852 aaPredicted RBP17.68■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 GOLGA6L1Q8N7Z2 621 aa17.68■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 SUPT20HQ8NEM7 779 aa17.68■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 CRYGNQ8WXF5 182 aa17.68■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 AIPL1Q9NZN9 384 aa17.68■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 TSKSQ9UJT2 592 aa17.68■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 A0A087X0T9 212 aa17.68■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 PALMO75781 387 aa17.68■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 FAM228BP0C875 321 aa17.68■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 CASP5P51878 434 aa17.68■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 ADAM9Q13443 819 aa17.68■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 TSEN2Q8NCE0 465 aaKnown RBP17.68■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 SH3GL2Q99962 352 aa17.68■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 DHX36Q9H2U1 1008 aaKnown RBP17.68■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 PCDHA1Q9Y5I3 950 aa17.68■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 PITPNM2Q9BZ72 1349 aa17.67■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 MYO1CO00159 1063 aa17.67■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 MEIS2O14770 477 aa17.67■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 EDRF1Q3B7T1 1238 aa17.67■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 C9orf131Q5VYM1 1079 aa17.67■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 HHIPL2Q6UWX4 724 aa17.67■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 RRP15Q9Y3B9 282 aaKnown RBP17.67■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 ZNF646O15015 1829 aaPredicted RBP17.67■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 POTEFA5A3E0 1075 aa17.67■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 SHOX2O60902 331 aaPredicted RBP17.67■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 HLA-DOAP06340 250 aa17.67■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 POTEIP0CG38 1075 aa17.67■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 EPHB4P54760 987 aa17.67■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 NAP1L1P55209 391 aaKnown RBP17.67■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 KCNH2Q12809 1159 aa17.67■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 RAPGEF1Q13905 1077 aa17.67■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 DACT2Q5SW24 774 aa17.67■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 POTEGQ6S5H5 508 aa17.67■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 POTEEQ6S8J3 1075 aa17.67■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 PODNQ7Z5L7 613 aa17.67■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 ETNPPLQ8TBG4 499 aa17.67■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 MKL1Q969V6 931 aa17.67■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 PACSIN1Q9BY11 444 aa17.67■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 GLT8D2Q9H1C3 349 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms