RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 hCG_1984214I3L0E3 225 aa7.77□□□□□ -1.17
VPS52-219ENST00000493379 ERVH48-1M5A8F1 160 aa7.77□□□□□ -1.17
VPS52-219ENST00000493379 PRPF3O43395 683 aaKnown RBP7.77□□□□□ -1.17
VPS52-219ENST00000493379 PLEKHA8P1O95397 391 aa7.77□□□□□ -1.17
VPS52-219ENST00000493379 SNAI1O95863 264 aaPredicted RBP7.77□□□□□ -1.17
VPS52-219ENST00000493379 CYP2B6P20813 491 aa7.77□□□□□ -1.17
VPS52-219ENST00000493379 EDNRBP24530 442 aa7.77□□□□□ -1.17
VPS52-219ENST00000493379 ADD1P35611 737 aaKnown RBP7.77□□□□□ -1.17
VPS52-219ENST00000493379 RTP1P59025 263 aa7.77□□□□□ -1.17
VPS52-219ENST00000493379 RAB15P59190 212 aa7.77□□□□□ -1.17
VPS52-219ENST00000493379 SNAP25P60880 206 aa7.77□□□□□ -1.17
VPS52-219ENST00000493379 NKX3-2P78367 333 aa7.77□□□□□ -1.17
VPS52-219ENST00000493379 APOBRQ0VD83 1088 aa7.77□□□□□ -1.17
VPS52-219ENST00000493379 IKQ13123 557 aaPredicted RBP7.77□□□□□ -1.17
VPS52-219ENST00000493379 OCLNQ16625 522 aa7.77□□□□□ -1.17
VPS52-219ENST00000493379 FOXD4L5Q5VV16 416 aaPredicted RBP7.77□□□□□ -1.17
VPS52-219ENST00000493379 PPP1R18Q6NYC8 613 aa7.77□□□□□ -1.17
VPS52-219ENST00000493379 DPP9Q86TI2 863 aa7.77□□□□□ -1.17
VPS52-219ENST00000493379 FBXO11Q86XK2 927 aa7.77□□□□□ -1.17
VPS52-219ENST00000493379 MCF2L2Q86YR7 1114 aa7.77□□□□□ -1.17
VPS52-219ENST00000493379 CCAR1Q8IX12 1150 aaKnown RBP7.77□□□□□ -1.17
VPS52-219ENST00000493379 ZNF713Q8N859 430 aaPredicted RBP7.77□□□□□ -1.17
VPS52-219ENST00000493379 DNERQ8NFT8 737 aa7.77□□□□□ -1.17
VPS52-219ENST00000493379 NUP133Q8WUM0 1156 aa7.77□□□□□ -1.17
VPS52-219ENST00000493379 FOXD4L4Q8WXT5 416 aaPredicted RBP7.77□□□□□ -1.17
VPS52-219ENST00000493379 TBC1D32Q96NH3 1257 aa7.77□□□□□ -1.17
VPS52-219ENST00000493379 PIGSQ96S52 555 aa7.77□□□□□ -1.17
VPS52-219ENST00000493379 MMP19Q99542 508 aa7.77□□□□□ -1.17
VPS52-219ENST00000493379 PBX4Q9BYU1 374 aa7.77□□□□□ -1.17
VPS52-219ENST00000493379 UPF3BQ9BZI7 483 aaKnown RBP7.77□□□□□ -1.17
VPS52-219ENST00000493379 KATNBL1Q9H079 304 aa7.77□□□□□ -1.17
VPS52-219ENST00000493379 RNF146Q9NTX7 359 aa7.77□□□□□ -1.17
VPS52-219ENST00000493379 ATP11BQ9Y2G3 1177 aa7.77□□□□□ -1.17
VPS52-219ENST00000493379 MRPL11Q9Y3B7 192 aaKnown RBP7.77□□□□□ -1.17
VPS52-219ENST00000493379 CTDP1Q9Y5B0 961 aaPredicted RBP7.77□□□□□ -1.17
VPS52-219ENST00000493379 PCDHA1Q9Y5I3 950 aa7.77□□□□□ -1.17
VPS52-219ENST00000493379 FRMPD3Q5JV73 1810 aa7.77□□□□□ -1.17
VPS52-219ENST00000493379 GBF1Q92538 1859 aa7.77□□□□□ -1.17
VPS52-219ENST00000493379 ASTN1O14525 1302 aa7.77□□□□□ -1.17
VPS52-219ENST00000493379 SPTBN2O15020 2390 aa7.76□□□□□ -1.17
VPS52-219ENST00000493379 HSFX4A0A1B0GTS1 333 aaPredicted RBP7.76□□□□□ -1.17
VPS52-219ENST00000493379 HSFX3A0A1B0GWH4 333 aaPredicted RBP7.76□□□□□ -1.17
VPS52-219ENST00000493379 NFIBO00712 420 aa7.76□□□□□ -1.17
VPS52-219ENST00000493379 PRMT3O60678 531 aa7.76□□□□□ -1.17
VPS52-219ENST00000493379 PFKFB2O60825 505 aa7.76□□□□□ -1.17
VPS52-219ENST00000493379 ZNF865P0CJ78 1059 aaPredicted RBP7.76□□□□□ -1.17
VPS52-219ENST00000493379 ALAS1P13196 640 aa7.76□□□□□ -1.17
VPS52-219ENST00000493379 CYBAP13498 195 aa7.76□□□□□ -1.17
VPS52-219ENST00000493379 SCNN1AP37088 669 aa7.76□□□□□ -1.17
VPS52-219ENST00000493379 SCTRP47872 440 aa7.76□□□□□ -1.17
VPS52-219ENST00000493379 METAP2P50579 478 aaKnown RBP eCLIP7.76□□□□□ -1.17
VPS52-219ENST00000493379 AK2P54819 239 aa7.76□□□□□ -1.17
VPS52-219ENST00000493379 RPS6P62753 249 aaKnown RBP7.76□□□□□ -1.17
VPS52-219ENST00000493379 CACNB2Q08289 660 aaPredicted RBP7.76□□□□□ -1.17
VPS52-219ENST00000493379 TCF15Q12870 199 aa7.76□□□□□ -1.17
VPS52-219ENST00000493379 BAATQ14032 418 aaPredicted RBP7.76□□□□□ -1.17
VPS52-219ENST00000493379 PKN1Q16512 942 aa7.76□□□□□ -1.17
VPS52-219ENST00000493379 CCL14Q16627 93 aa7.76□□□□□ -1.17
VPS52-219ENST00000493379 RTN1Q16799 776 aa7.76□□□□□ -1.17
VPS52-219ENST00000493379 CCDC174Q6PII3 467 aa7.76□□□□□ -1.17
VPS52-219ENST00000493379 ANKRD35Q8N283 1001 aa7.76□□□□□ -1.17
VPS52-219ENST00000493379 TBC1D5Q92609 795 aa7.76□□□□□ -1.17
VPS52-219ENST00000493379 RNF166Q96A37 237 aaPredicted RBP7.76□□□□□ -1.17
VPS52-219ENST00000493379 RRP36Q96EU6 259 aaKnown RBP7.76□□□□□ -1.17
VPS52-219ENST00000493379 DDX11Q96FC9 970 aa7.76□□□□□ -1.17
VPS52-219ENST00000493379 CDK15Q96Q40 435 aa7.76□□□□□ -1.17
VPS52-219ENST00000493379 TINF2Q9BSI4 451 aa7.76□□□□□ -1.17
VPS52-219ENST00000493379 RNF26Q9BY78 433 aaPredicted RBP7.76□□□□□ -1.17
VPS52-219ENST00000493379 VAT1LQ9HCJ6 419 aa7.76□□□□□ -1.17
VPS52-219ENST00000493379 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.76□□□□□ -1.17
VPS52-219ENST00000493379 TPCN1Q9ULQ1 816 aa7.76□□□□□ -1.17
VPS52-219ENST00000493379 CNTNAP5Q8WYK1 1306 aa7.76□□□□□ -1.17
VPS52-219ENST00000493379 RBM47A0AV96 593 aaKnown RBP7.75□□□□□ -1.17
VPS52-219ENST00000493379 ESYT2A0FGR8 921 aa7.75□□□□□ -1.17
VPS52-219ENST00000493379 TRIM43BA6NCK2 446 aa7.75□□□□□ -1.17
VPS52-219ENST00000493379 ASB14A6NK59 587 aa7.75□□□□□ -1.17
VPS52-219ENST00000493379 GOLGA8AA7E2F4 631 aa7.75□□□□□ -1.17
VPS52-219ENST00000493379 GOLGA8BA8MQT2 603 aa7.75□□□□□ -1.17
VPS52-219ENST00000493379 MEIS2O14770 477 aa7.75□□□□□ -1.17
VPS52-219ENST00000493379 PGK2P07205 417 aa7.75□□□□□ -1.17
VPS52-219ENST00000493379 RXRAP19793 462 aa7.75□□□□□ -1.17
VPS52-219ENST00000493379 SERPINB4P48594 390 aa7.75□□□□□ -1.17
VPS52-219ENST00000493379 NEK4P51957 841 aa7.75□□□□□ -1.17
VPS52-219ENST00000493379 CNTN2Q02246 1040 aa7.75□□□□□ -1.17
VPS52-219ENST00000493379 RABEP1Q15276 862 aa7.75□□□□□ -1.17
VPS52-219ENST00000493379 PFKFB3Q16875 520 aaPredicted RBP7.75□□□□□ -1.17
VPS52-219ENST00000493379 MFSD14CQ5VZR4 134 aa7.75□□□□□ -1.17
VPS52-219ENST00000493379 RNF207Q6ZRF8 634 aa7.75□□□□□ -1.17
VPS52-219ENST00000493379 ASCL5Q7RTU5 278 aa7.75□□□□□ -1.17
VPS52-219ENST00000493379 TAS1R3Q7RTX0 852 aa7.75□□□□□ -1.17
VPS52-219ENST00000493379 MICU3Q86XE3 530 aa7.75□□□□□ -1.17
VPS52-219ENST00000493379 EHBP1Q8NDI1 1231 aa7.75□□□□□ -1.17
VPS52-219ENST00000493379 TRPV1Q8NER1 839 aa7.75□□□□□ -1.17
VPS52-219ENST00000493379 SYTL5Q8TDW5 730 aaPredicted RBP7.75□□□□□ -1.17
VPS52-219ENST00000493379 TRIM43Q96BQ3 446 aaPredicted RBP7.75□□□□□ -1.17
VPS52-219ENST00000493379 CHMP4CQ96CF2 233 aa7.75□□□□□ -1.17
VPS52-219ENST00000493379 PRIMPOLQ96LW4 560 aa7.75□□□□□ -1.17
VPS52-219ENST00000493379 IWS1Q96ST2 819 aa7.75□□□□□ -1.17
VPS52-219ENST00000493379 ABHD16BQ9H3Z7 469 aa7.75□□□□□ -1.17
VPS52-219ENST00000493379 SH3GLB2Q9NR46 395 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms