RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 UMODL1Q5DID0 1318 aa18.39■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 H3BQV1 296 aa18.38■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 WNT7AO00755 349 aa18.38■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 CHMP2AO43633 222 aa18.38■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 U2AF2P26368 475 aaKnown RBP eCLIP18.38■□□□□ 0.539e-9■■■■□ 22.4
MSH5-SAPCD1-206ENST00000491552 SFNP31947 248 aa18.38■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 SLC26A2P50443 739 aa18.38■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 JAK3P52333 1124 aa18.38■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 FPGSQ05932 587 aa18.38■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 PTK7Q13308 1070 aa18.38■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 SWSAP1Q6NVH7 229 aa18.38■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 HSCBQ8IWL3 235 aa18.38■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 TMEM199Q8N511 208 aa18.38■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 ATP6V0A1Q93050 837 aa18.38■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 SETD4Q9NVD3 440 aa18.38■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 NRCAMQ92823 1304 aa18.38■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 PITPNM1O00562 1244 aa18.37■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 MARCH6O60337 910 aa18.37■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 NEMFO60524 1076 aa18.37■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 BAG4O95429 457 aaKnown RBP18.37■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 ATP2B1P20020 1258 aa18.37■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 PPFIA1Q13136 1202 aa18.37■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 BFSP2Q13515 415 aa18.37■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 PLCB4Q15147 1175 aa18.37■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 PDXDC2PQ6P474 469 aa18.37■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 B3GNT9Q6UX72 402 aa18.37■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 MIER3Q7Z3K6 550 aa18.37■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 SLFN12Q8IYM2 578 aa18.37■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 RDM1Q8NG50 284 aa18.37■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 CAGE1Q8TC20 777 aa18.37■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 LMBR1Q8WVP7 490 aa18.37■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 DHX38Q92620 1227 aaKnown RBP18.37■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 HAS1Q92839 578 aa18.37■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 TNPO1Q92973 898 aaKnown RBP18.37■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 INTS4Q96HW7 963 aaKnown RBP18.37■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 DISC1Q9NRI5 854 aa18.37■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 NOL7Q9UMY1 257 aaKnown RBP18.37■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 TRPC6Q9Y210 931 aa18.37■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 POTEB3A0JP26 581 aa18.36■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 TREHO43280 583 aa18.36■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 CCL23P55773 120 aa18.36■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 ADAM17P78536 824 aa18.36■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 RBL2Q08999 1139 aa18.36■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 PPIGQ13427 754 aaKnown RBP eCLIP18.36■□□□□ 0.532e-6■■■□□ 18.5
MSH5-SAPCD1-206ENST00000491552 GRIK4Q16099 956 aa18.36■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 CALCRLQ16602 461 aa18.36■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 LARP1BQ659C4 914 aaKnown RBP18.36■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 MCTP1Q6DN14 999 aa18.36■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 POTEBQ6S5H4 581 aa18.36■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 SERINC5Q86VE9 423 aa18.36■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 RETREG2Q8NC44 543 aa18.36■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 WNT8AQ9H1J5 351 aa18.36■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 GABBR1Q9UBS5 961 aa18.36■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 IGSF9BQ9UPX0 1349 aa18.36■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 TANC1Q9C0D5 1861 aa18.35■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 A0A1W2PPC1 479 aa18.35■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 CSF2RAP15509 400 aa18.35■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 MCM7P33993 719 aa18.35■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 TRAPPC10P48553 1259 aa18.35■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 PPP2R5CQ13362 524 aa18.35■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 ORC2Q13416 577 aaPredicted RBP18.35■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 TTC38Q5R3I4 469 aa18.35■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 ATP8B4Q8TF62 1192 aa18.35■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 VAV3Q9UKW4 847 aa18.35■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 MAFBQ9Y5Q3 323 aaPredicted RBP18.35■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 RRN3P2A6NIE6 340 aa18.34■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 HBP1O60381 514 aa18.34■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 INSRRP14616 1297 aa18.34■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 ATP4AP20648 1035 aa18.34■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 PDCP20941 246 aa18.34■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 IGBP1P78318 339 aa18.34■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 TRIM71Q2Q1W2 868 aaKnown RBP18.34■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 CKAP2LQ8IYA6 745 aa18.34■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 TDHQ8IZJ6 230 aa18.34■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 WNT8BQ93098 351 aa18.34■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 SCLYQ96I15 445 aa18.34■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 FOXD4L1Q9NU39 408 aa18.34■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 TUBE1Q9UJT0 475 aa18.34■□□□□ 0.53
MSH5-SAPCD1-206ENST00000491552 IQCF3P0C7M6 154 aa18.33■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 CKBP12277 381 aa18.33■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 EPHB4P54760 987 aa18.33■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 ZNF174Q15697 407 aa18.33■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 UGCGQ16739 394 aa18.33■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 BBXQ8WY36 941 aaPredicted RBP18.33■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 FAM167AQ96KS9 214 aa18.33■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 MTMR9Q96QG7 549 aa18.33■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 IL23AQ9NPF7 189 aa18.33■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 CEP290O15078 2479 aa18.32■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 COL1A2P08123 1366 aa18.32■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 TRIP12Q14669 1992 aaPredicted RBP18.32■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 MBLAC1A4D2B0 266 aaPredicted RBP18.32■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 EML1O00423 815 aa18.32■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 SELPP16109 830 aa18.32■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 RFC2P35250 354 aa18.32■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 PRKCEQ02156 737 aa18.32■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 HABP4Q5JVS0 413 aaKnown RBP18.32■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 MARCH8Q5T0T0 291 aa18.32■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 NCAPH2Q6IBW4 605 aa18.32■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 LRRC8DQ7L1W4 858 aa18.32■□□□□ 0.52
MSH5-SAPCD1-206ENST00000491552 TMEM60Q9H2L4 133 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms