RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 PHKA1P46020 1223 aa6.54□□□□□ -1.36
VPS41-214ENST00000490924 TDO2P48775 406 aa6.54□□□□□ -1.36
VPS41-214ENST00000490924 AARSP49588 968 aaKnown RBP eCLIP6.54□□□□□ -1.36
VPS41-214ENST00000490924 PDE4BQ07343 736 aa6.54□□□□□ -1.36
VPS41-214ENST00000490924 PPARAQ07869 468 aa6.54□□□□□ -1.36
VPS41-214ENST00000490924 TROAPQ12815 778 aa6.54□□□□□ -1.36
VPS41-214ENST00000490924 RASGRF1Q13972 1273 aa6.54□□□□□ -1.36
VPS41-214ENST00000490924 UBE4AQ14139 1066 aa6.54□□□□□ -1.36
VPS41-214ENST00000490924 SMC1AQ14683 1233 aaKnown RBP6.54□□□□□ -1.36
VPS41-214ENST00000490924 MEA1Q16626 185 aa6.54□□□□□ -1.36
VPS41-214ENST00000490924 LONRF2Q1L5Z9 754 aa6.54□□□□□ -1.36
VPS41-214ENST00000490924 SBK1Q52WX2 424 aa6.54□□□□□ -1.36
VPS41-214ENST00000490924 BEND6Q5SZJ8 279 aaPredicted RBP6.54□□□□□ -1.36
VPS41-214ENST00000490924 ZNF658Q5TYW1 1059 aaPredicted RBP6.54□□□□□ -1.36
VPS41-214ENST00000490924 ZNF772Q68DY9 489 aaPredicted RBP6.54□□□□□ -1.36
VPS41-214ENST00000490924 CLEC4GQ6UXB4 293 aa6.54□□□□□ -1.36
VPS41-214ENST00000490924 TMTC3Q6ZXV5 915 aa6.54□□□□□ -1.36
VPS41-214ENST00000490924 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.54□□□□□ -1.36
VPS41-214ENST00000490924 ZNF572Q7Z3I7 529 aaPredicted RBP6.54□□□□□ -1.36
VPS41-214ENST00000490924 CCDC170Q8IYT3 715 aa6.54□□□□□ -1.36
VPS41-214ENST00000490924 IGSF22Q8N9C0 903 aa6.54□□□□□ -1.36
VPS41-214ENST00000490924 KLHL23Q8NBE8 558 aa6.54□□□□□ -1.36
VPS41-214ENST00000490924 DAGLBQ8NCG7 672 aa6.54□□□□□ -1.36
VPS41-214ENST00000490924 FAM71BQ8TC56 605 aa6.54□□□□□ -1.36
VPS41-214ENST00000490924 PHKBQ93100 1093 aa6.54□□□□□ -1.36
VPS41-214ENST00000490924 PAGE5Q96GU1 130 aa6.54□□□□□ -1.36
VPS41-214ENST00000490924 AK8Q96MA6 479 aa6.54□□□□□ -1.36
VPS41-214ENST00000490924 CLIC6Q96NY7 704 aa6.54□□□□□ -1.36
VPS41-214ENST00000490924 WDR24Q96S15 920 aa6.54□□□□□ -1.36
VPS41-214ENST00000490924 DNAJC7Q99615 494 aa6.54□□□□□ -1.36
VPS41-214ENST00000490924 NAPGQ99747 312 aaPredicted RBP6.54□□□□□ -1.36
VPS41-214ENST00000490924 LZTS2Q9BRK4 669 aa6.54□□□□□ -1.36
VPS41-214ENST00000490924 NUP58Q9BVL2 599 aa6.54□□□□□ -1.36
VPS41-214ENST00000490924 PARD6BQ9BYG5 372 aa6.54□□□□□ -1.36
VPS41-214ENST00000490924 THAP9Q9H5L6 903 aa6.54□□□□□ -1.36
VPS41-214ENST00000490924 TRMT112Q9UI30 125 aaKnown RBP6.54□□□□□ -1.36
VPS41-214ENST00000490924 L1RE1Q9UN81 338 aa6.54□□□□□ -1.36
VPS41-214ENST00000490924 TRIM33Q9UPN9 1127 aa6.54□□□□□ -1.36
VPS41-214ENST00000490924 USP20Q9Y2K6 914 aa6.54□□□□□ -1.36
VPS41-214ENST00000490924 A0A0U1RQG5 324 aaPredicted RBP6.53□□□□□ -1.36
VPS41-214ENST00000490924 CTAGE15A4D2H0 777 aa6.53□□□□□ -1.36
VPS41-214ENST00000490924 TMEM232C9JQI7 657 aa6.53□□□□□ -1.36
VPS41-214ENST00000490924 OPLAHO14841 1288 aa6.53□□□□□ -1.36
VPS41-214ENST00000490924 SLC26A4O43511 780 aa6.53□□□□□ -1.36
VPS41-214ENST00000490924 DTNBO60941 627 aa6.53□□□□□ -1.36
VPS41-214ENST00000490924 CTAGE8P0CG41 777 aa6.53□□□□□ -1.36
VPS41-214ENST00000490924 PRLRP16471 622 aa6.53□□□□□ -1.36
VPS41-214ENST00000490924 SMARCA1P28370 1054 aa6.53□□□□□ -1.36
VPS41-214ENST00000490924 RXRBP28702 533 aa6.53□□□□□ -1.36
VPS41-214ENST00000490924 KIF5BP33176 963 aa6.53□□□□□ -1.36
VPS41-214ENST00000490924 IGHMBP2P38935 993 aaKnown RBP6.53□□□□□ -1.36
VPS41-214ENST00000490924 ARL4DP49703 201 aa6.53□□□□□ -1.36
VPS41-214ENST00000490924 GNAQP50148 359 aa6.53□□□□□ -1.36
VPS41-214ENST00000490924 EIF5P55010 431 aaKnown RBP6.53□□□□□ -1.36
VPS41-214ENST00000490924 KRT83P78385 493 aa6.53□□□□□ -1.36
VPS41-214ENST00000490924 AMPD2Q01433 879 aa6.53□□□□□ -1.36
VPS41-214ENST00000490924 CKAP4Q07065 602 aaKnown RBP6.53□□□□□ -1.36
VPS41-214ENST00000490924 NFIAQ12857 509 aa6.53□□□□□ -1.36
VPS41-214ENST00000490924 PAK1Q13153 545 aa6.53□□□□□ -1.36
VPS41-214ENST00000490924 STIM1Q13586 685 aa6.53□□□□□ -1.36
VPS41-214ENST00000490924 CHRNA2Q15822 529 aa6.53□□□□□ -1.36
VPS41-214ENST00000490924 PKN1Q16512 942 aa6.53□□□□□ -1.36
VPS41-214ENST00000490924 MEX3CQ5U5Q3 659 aaKnown RBP6.53□□□□□ -1.36
VPS41-214ENST00000490924 PAPD7Q5XG87 772 aaKnown RBP6.53□□□□□ -1.36
VPS41-214ENST00000490924 CTR9Q6PD62 1173 aa6.53□□□□□ -1.36
VPS41-214ENST00000490924 TOGARAM2Q6ZUX3 1019 aa6.53□□□□□ -1.36
VPS41-214ENST00000490924 CTAGE6Q86UF2 777 aa6.53□□□□□ -1.36
VPS41-214ENST00000490924 CTAGE4Q8IX94 777 aa6.53□□□□□ -1.36
VPS41-214ENST00000490924 DNAJC10Q8IXB1 793 aa6.53□□□□□ -1.36
VPS41-214ENST00000490924 FNBP4Q8N3X1 1017 aaPredicted RBP6.53□□□□□ -1.36
VPS41-214ENST00000490924 MAGEB6Q8N7X4 407 aa6.53□□□□□ -1.36
VPS41-214ENST00000490924 CCDC12Q8WUD4 166 aaPredicted RBP6.53□□□□□ -1.36
VPS41-214ENST00000490924 PIGBQ92521 554 aa6.53□□□□□ -1.36
VPS41-214ENST00000490924 AIFM3Q96NN9 605 aa6.53□□□□□ -1.36
VPS41-214ENST00000490924 MED15Q96RN5 788 aa6.53□□□□□ -1.36
VPS41-214ENST00000490924 EDEM3Q9BZQ6 932 aa6.53□□□□□ -1.36
VPS41-214ENST00000490924 TSGA10Q9BZW7 698 aa6.53□□□□□ -1.36
VPS41-214ENST00000490924 LACRTQ9GZZ8 138 aa6.53□□□□□ -1.36
VPS41-214ENST00000490924 FAM107BQ9H098 131 aa6.53□□□□□ -1.36
VPS41-214ENST00000490924 CSRNP2Q9H175 543 aa6.53□□□□□ -1.36
VPS41-214ENST00000490924 ATP8A2Q9NTI2 1148 aa6.53□□□□□ -1.36
VPS41-214ENST00000490924 ABHD10Q9NUJ1 306 aa6.53□□□□□ -1.36
VPS41-214ENST00000490924 DDX52Q9Y2R4 599 aaKnown RBP eCLIP6.53□□□□□ -1.36
VPS41-214ENST00000490924 PCDHB6Q9Y5E3 794 aa6.53□□□□□ -1.36
VPS41-214ENST00000490924 ECM29Q5VYK3 1845 aa6.53□□□□□ -1.36
VPS41-214ENST00000490924 DUOX1Q9NRD9 1551 aa6.52□□□□□ -1.36
VPS41-214ENST00000490924 TNKSO95271 1327 aa6.52□□□□□ -1.37
VPS41-214ENST00000490924 NHSL1Q5SYE7 1610 aa6.52□□□□□ -1.37
VPS41-214ENST00000490924 A0A087WWV3 80 aa6.52□□□□□ -1.37
VPS41-214ENST00000490924 BICDL2A1A5D9 508 aa6.52□□□□□ -1.37
VPS41-214ENST00000490924 LGALS16A8MUM7 142 aa6.52□□□□□ -1.37
VPS41-214ENST00000490924 hCG_1984214I3L0E3 225 aa6.52□□□□□ -1.37
VPS41-214ENST00000490924 GAS2O43903 313 aaKnown RBP6.52□□□□□ -1.37
VPS41-214ENST00000490924 TGFB1P01137 390 aa6.52□□□□□ -1.37
VPS41-214ENST00000490924 GYPCP04921 128 aa6.52□□□□□ -1.37
VPS41-214ENST00000490924 HOXD8P13378 290 aaPredicted RBP6.52□□□□□ -1.37
VPS41-214ENST00000490924 PTPRAP18433 802 aa6.52□□□□□ -1.37
VPS41-214ENST00000490924 GRNP28799 593 aaKnown RBP6.52□□□□□ -1.37
VPS41-214ENST00000490924 HNRNPH3P31942 346 aaKnown RBP6.52□□□□□ -1.37
VPS41-214ENST00000490924 ACTN2P35609 894 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms