RNA–Protein interactions for RNA: ENST00000488325.5

HLA-DOB-209, Transcript of major histocompatibility complex, class II, DO beta, humanhuman

Gene HLA-DOB, Length 1,188 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOB-209ENST00000488325 TMEM60Q9H2L4 133 aa13.57□□□□□ -0.24
HLA-DOB-209ENST00000488325 TSPY26PQ9H489 355 aa13.57□□□□□ -0.24
HLA-DOB-209ENST00000488325 SLC5A4Q9NY91 659 aa13.57□□□□□ -0.24
HLA-DOB-209ENST00000488325 PCDHA11Q9Y5I1 949 aa13.57□□□□□ -0.24
HLA-DOB-209ENST00000488325 BRWD1Q9NSI6 2320 aa13.56□□□□□ -0.24
HLA-DOB-209ENST00000488325 ADAMTS4O75173 837 aa13.56□□□□□ -0.24
HLA-DOB-209ENST00000488325 TDP2O95551 362 aa13.56□□□□□ -0.24
HLA-DOB-209ENST00000488325 ALADP13716 330 aa13.56□□□□□ -0.24
HLA-DOB-209ENST00000488325 HOXA13P31271 388 aaPredicted RBP13.56□□□□□ -0.24
HLA-DOB-209ENST00000488325 CIITAP33076 1130 aa13.56□□□□□ -0.24
HLA-DOB-209ENST00000488325 ZNF76P36508 570 aa13.56□□□□□ -0.24
HLA-DOB-209ENST00000488325 CAMK4Q16566 473 aa13.56□□□□□ -0.24
HLA-DOB-209ENST00000488325 SPECC1Q5M775 1068 aa13.56□□□□□ -0.24
HLA-DOB-209ENST00000488325 SNRNP48Q6IEG0 339 aaKnown RBP13.56□□□□□ -0.24
HLA-DOB-209ENST00000488325 OTOP2Q7RTS6 562 aa13.56□□□□□ -0.24
HLA-DOB-209ENST00000488325 FCHSD1Q86WN1 690 aa13.56□□□□□ -0.24
HLA-DOB-209ENST00000488325 GJD3Q8N144 294 aa13.56□□□□□ -0.24
HLA-DOB-209ENST00000488325 CNNM3Q8NE01 707 aa13.56□□□□□ -0.24
HLA-DOB-209ENST00000488325 CRYGNQ8WXF5 182 aa13.56□□□□□ -0.24
HLA-DOB-209ENST00000488325 CLEC4DQ8WXI8 215 aa13.56□□□□□ -0.24
HLA-DOB-209ENST00000488325 TRERF1Q96PN7 1200 aa13.56□□□□□ -0.24
HLA-DOB-209ENST00000488325 RNF146Q9NTX7 359 aa13.56□□□□□ -0.24
HLA-DOB-209ENST00000488325 NRBP1Q9UHY1 535 aa13.56□□□□□ -0.24
HLA-DOB-209ENST00000488325 MROH7Q68CQ1 1323 aa13.56□□□□□ -0.24
HLA-DOB-209ENST00000488325 USP34Q70CQ2 3546 aa13.56□□□□□ -0.24
HLA-DOB-209ENST00000488325 PARP14Q460N5 1801 aa13.55□□□□□ -0.24
HLA-DOB-209ENST00000488325 ZNF318Q5VUA4 2279 aa13.55□□□□□ -0.24
HLA-DOB-209ENST00000488325 EPOPA6NHQ4 379 aa13.55□□□□□ -0.24
HLA-DOB-209ENST00000488325 TBX3O15119 743 aa13.55□□□□□ -0.24
HLA-DOB-209ENST00000488325 POLR2DO15514 142 aaKnown RBP13.55□□□□□ -0.24
HLA-DOB-209ENST00000488325 ERCC3P19447 782 aa13.55□□□□□ -0.24
HLA-DOB-209ENST00000488325 CYP2C18P33260 490 aa13.55□□□□□ -0.24
HLA-DOB-209ENST00000488325 COPB2P35606 906 aa13.55□□□□□ -0.24
HLA-DOB-209ENST00000488325 UBA7P41226 1012 aa13.55□□□□□ -0.24
HLA-DOB-209ENST00000488325 CDK7P50613 346 aa13.55□□□□□ -0.24
HLA-DOB-209ENST00000488325 SASS6Q6UVJ0 657 aa13.55□□□□□ -0.24
HLA-DOB-209ENST00000488325 KRBA2Q6ZNG9 492 aa13.55□□□□□ -0.24
HLA-DOB-209ENST00000488325 MTMR9Q96QG7 549 aa13.55□□□□□ -0.24
HLA-DOB-209ENST00000488325 CCSER1Q9C0I3 900 aa13.55□□□□□ -0.24
HLA-DOB-209ENST00000488325 ACAD9Q9H845 621 aa13.55□□□□□ -0.24
HLA-DOB-209ENST00000488325 CERS4Q9HA82 394 aa13.55□□□□□ -0.24
HLA-DOB-209ENST00000488325 CCDC39Q9UFE4 941 aa13.55□□□□□ -0.24
HLA-DOB-209ENST00000488325 A0A0G2JMZ2 1700 aa13.55□□□□□ -0.24
HLA-DOB-209ENST00000488325 FSD2A1L4K1 749 aa13.54□□□□□ -0.24
HLA-DOB-209ENST00000488325 MOXD2PA6NHM9 499 aa13.54□□□□□ -0.24
HLA-DOB-209ENST00000488325 NFIBO00712 420 aa13.54□□□□□ -0.24
HLA-DOB-209ENST00000488325 SLC37A4O43826 429 aa13.54□□□□□ -0.24
HLA-DOB-209ENST00000488325 EDIL3O43854 480 aa13.54□□□□□ -0.24
HLA-DOB-209ENST00000488325 STAT3P40763 770 aa13.54□□□□□ -0.24
HLA-DOB-209ENST00000488325 FXR2P51116 673 aaKnown RBP eCLIP13.54□□□□□ -0.24
HLA-DOB-209ENST00000488325 PDIA5Q14554 519 aa13.54□□□□□ -0.24
HLA-DOB-209ENST00000488325 PLS1Q14651 629 aa13.54□□□□□ -0.24
HLA-DOB-209ENST00000488325 TMEM132BQ14DG7 1078 aa13.54□□□□□ -0.24
HLA-DOB-209ENST00000488325 ZRSR1Q15695 479 aaKnown RBP13.54□□□□□ -0.24
HLA-DOB-209ENST00000488325 Q4G0T1 1027 aa13.54□□□□□ -0.24
HLA-DOB-209ENST00000488325 RNF207Q6ZRF8 634 aa13.54□□□□□ -0.24
HLA-DOB-209ENST00000488325 FAM178BQ8IXR5 827 aa13.54□□□□□ -0.24
HLA-DOB-209ENST00000488325 CKAP2LQ8IYA6 745 aa13.54□□□□□ -0.24
HLA-DOB-209ENST00000488325 SLFN12Q8IYM2 578 aa13.54□□□□□ -0.24
HLA-DOB-209ENST00000488325 CEP57L1Q8IYX8 460 aa13.54□□□□□ -0.24
HLA-DOB-209ENST00000488325 IQUBQ8NA54 791 aa13.54□□□□□ -0.24
HLA-DOB-209ENST00000488325 SHCBP1Q8NEM2 672 aa13.54□□□□□ -0.24
HLA-DOB-209ENST00000488325 CHST13Q8NET6 341 aa13.54□□□□□ -0.24
HLA-DOB-209ENST00000488325 RASSF8Q8NHQ8 419 aa13.54□□□□□ -0.24
HLA-DOB-209ENST00000488325 SPATC1LQ9H0A9 340 aa13.54□□□□□ -0.24
HLA-DOB-209ENST00000488325 HOMER2Q9NSB8 354 aa13.54□□□□□ -0.24
HLA-DOB-209ENST00000488325 FBXO40Q9UH90 709 aa13.54□□□□□ -0.24
HLA-DOB-209ENST00000488325 ZNF214Q9UL59 606 aaPredicted RBP13.54□□□□□ -0.24
HLA-DOB-209ENST00000488325 STK24Q9Y6E0 443 aa13.54□□□□□ -0.24
HLA-DOB-209ENST00000488325 SLC4A7Q9Y6M7 1214 aa13.54□□□□□ -0.24
HLA-DOB-209ENST00000488325 MYH7BA7E2Y1 1941 aa13.53□□□□□ -0.24
HLA-DOB-209ENST00000488325 SLC26A4O43511 780 aa13.53□□□□□ -0.24
HLA-DOB-209ENST00000488325 AKR1A1P14550 325 aa13.53□□□□□ -0.24
HLA-DOB-209ENST00000488325 SSTR3P32745 418 aaPredicted RBP13.53□□□□□ -0.24
HLA-DOB-209ENST00000488325 TXKP42681 527 aa13.53□□□□□ -0.24
HLA-DOB-209ENST00000488325 SETQ01105 290 aaPredicted RBP13.53□□□□□ -0.24
HLA-DOB-209ENST00000488325 C1QBPQ07021 282 aaKnown RBP13.53□□□□□ -0.24
HLA-DOB-209ENST00000488325 KCNA10Q16322 511 aa13.53□□□□□ -0.24
HLA-DOB-209ENST00000488325 IL17AQ16552 155 aa13.53□□□□□ -0.24
HLA-DOB-209ENST00000488325 MUM1L1Q5H9M0 696 aa13.53□□□□□ -0.24
HLA-DOB-209ENST00000488325 NSMFQ6X4W1 530 aa13.53□□□□□ -0.24
HLA-DOB-209ENST00000488325 RIOX2Q8IUF8 465 aa13.53□□□□□ -0.24
HLA-DOB-209ENST00000488325 ABRAQ8N0Z2 381 aa13.53□□□□□ -0.24
HLA-DOB-209ENST00000488325 SYTL5Q8TDW5 730 aaPredicted RBP13.53□□□□□ -0.24
HLA-DOB-209ENST00000488325 TBC1D5Q92609 795 aa13.53□□□□□ -0.24
HLA-DOB-209ENST00000488325 EPSTI1Q96J88 318 aa13.53□□□□□ -0.24
HLA-DOB-209ENST00000488325 FAM20AQ96MK3 541 aa13.53□□□□□ -0.24
HLA-DOB-209ENST00000488325 GLT1D1Q96MS3 346 aa13.53□□□□□ -0.24
HLA-DOB-209ENST00000488325 SYNRGQ9UMZ2 1314 aa13.53□□□□□ -0.24
HLA-DOB-209ENST00000488325 SPTBN4Q9H254 2564 aa13.52□□□□□ -0.24
HLA-DOB-209ENST00000488325 CAVIN2O95810 425 aa13.52□□□□□ -0.25
HLA-DOB-209ENST00000488325 CA3P07451 260 aa13.52□□□□□ -0.25
HLA-DOB-209ENST00000488325 SLFN14P0C7P3 912 aa13.52□□□□□ -0.25
HLA-DOB-209ENST00000488325 TECP42680 631 aa13.52□□□□□ -0.25
HLA-DOB-209ENST00000488325 RPS6P62753 249 aaKnown RBP13.52□□□□□ -0.25
HLA-DOB-209ENST00000488325 TYRO3Q06418 890 aa13.52□□□□□ -0.25
HLA-DOB-209ENST00000488325 PRR16Q569H4 304 aa13.52□□□□□ -0.25
HLA-DOB-209ENST00000488325 CCSAPQ6IQ19 270 aaPredicted RBP13.52□□□□□ -0.25
HLA-DOB-209ENST00000488325 XRRA1Q6P2D8 792 aa13.52□□□□□ -0.25
HLA-DOB-209ENST00000488325 CABP7Q86V35 215 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms