RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 FSTL4Q6MZW2 842 aa8.61□□□□□ -1.03
USP40-213ENST00000483216 CNNM4Q6P4Q7 775 aa8.61□□□□□ -1.03
USP40-213ENST00000483216 KIF18BQ86Y91 864 aa8.61□□□□□ -1.03
USP40-213ENST00000483216 PPM1KQ8N3J5 372 aa8.61□□□□□ -1.03
USP40-213ENST00000483216 DTX3Q8N9I9 347 aa8.61□□□□□ -1.03
USP40-213ENST00000483216 SLKQ9H2G2 1235 aaPredicted RBP8.61□□□□□ -1.03
USP40-213ENST00000483216 KCNH7Q9NS40 1196 aa8.61□□□□□ -1.03
USP40-213ENST00000483216 NTMQ9P121 344 aa8.61□□□□□ -1.03
USP40-213ENST00000483216 B4GALT6Q9UBX8 382 aa8.61□□□□□ -1.03
USP40-213ENST00000483216 ZNF839A8K0R7 811 aa8.6□□□□□ -1.03
USP40-213ENST00000483216 HIP1RO75146 1068 aa8.6□□□□□ -1.03
USP40-213ENST00000483216 CYP7B1O75881 506 aa8.6□□□□□ -1.03
USP40-213ENST00000483216 CLSTN1O94985 981 aa8.6□□□□□ -1.03
USP40-213ENST00000483216 NEK4P51957 841 aa8.6□□□□□ -1.03
USP40-213ENST00000483216 IRF9Q00978 393 aa8.6□□□□□ -1.03
USP40-213ENST00000483216 PFKPQ01813 784 aa8.6□□□□□ -1.03
USP40-213ENST00000483216 VMACQ2NL98 169 aa8.6□□□□□ -1.03
USP40-213ENST00000483216 AHI1Q8N157 1196 aa8.6□□□□□ -1.03
USP40-213ENST00000483216 TARS2Q9BW92 718 aaKnown RBP8.6□□□□□ -1.03
USP40-213ENST00000483216 MTFR1LQ9H019 292 aa8.6□□□□□ -1.03
USP40-213ENST00000483216 PTPDC1A2A3K4 754 aa8.59□□□□□ -1.03
USP40-213ENST00000483216 PRAMEF25A6NGN4 478 aa8.59□□□□□ -1.03
USP40-213ENST00000483216 SDHAP31040 664 aa8.59□□□□□ -1.03
USP40-213ENST00000483216 PKN3Q6P5Z2 889 aa8.59□□□□□ -1.03
USP40-213ENST00000483216 CARFQ8N187 725 aa8.59□□□□□ -1.03
USP40-213ENST00000483216 IGDCC4Q8TDY8 1250 aa8.59□□□□□ -1.03
USP40-213ENST00000483216 A0A087X0B3 334 aa8.58□□□□□ -1.04
USP40-213ENST00000483216 KPNA6O60684 536 aa8.58□□□□□ -1.04
USP40-213ENST00000483216 AOAHP28039 575 aa8.58□□□□□ -1.04
USP40-213ENST00000483216 SARSP49591 514 aaKnown RBP8.58□□□□□ -1.04
USP40-213ENST00000483216 FZD5Q13467 585 aa8.58□□□□□ -1.04
USP40-213ENST00000483216 RTP5Q14D33 572 aa8.58□□□□□ -1.04
USP40-213ENST00000483216 SKIDA1Q1XH10 827 aa8.58□□□□□ -1.04
USP40-213ENST00000483216 EGFLAMQ63HQ2 1017 aa8.58□□□□□ -1.04
USP40-213ENST00000483216 ADGRG2Q8IZP9 1017 aa8.58□□□□□ -1.04
USP40-213ENST00000483216 ZSWIM3Q96MP5 696 aa8.58□□□□□ -1.04
USP40-213ENST00000483216 A0A1B0GTL3 188 aa8.57□□□□□ -1.04
USP40-213ENST00000483216 GSG1L2A8MUP6 293 aa8.57□□□□□ -1.04
USP40-213ENST00000483216 SLURP1P55000 103 aa8.57□□□□□ -1.04
USP40-213ENST00000483216 CC2D1AQ6P1N0 951 aaPredicted RBP8.57□□□□□ -1.04
USP40-213ENST00000483216 MARCH10Q8NA82 808 aaPredicted RBP8.57□□□□□ -1.04
USP40-213ENST00000483216 LUC7LQ9NQ29 371 aaKnown RBP8.57□□□□□ -1.04
USP40-213ENST00000483216 BTBD7Q9P203 1132 aa8.57□□□□□ -1.04
USP40-213ENST00000483216 ARHGAP20Q9P2F6 1191 aa8.57□□□□□ -1.04
USP40-213ENST00000483216 ARHGAP28Q9P2N2 729 aa8.57□□□□□ -1.04
USP40-213ENST00000483216 F2P00734 622 aa8.56□□□□□ -1.04
USP40-213ENST00000483216 CHGBP05060 677 aa8.56□□□□□ -1.04
USP40-213ENST00000483216 MYCLP1P12525 358 aaPredicted RBP8.56□□□□□ -1.04
USP40-213ENST00000483216 ZNF28P17035 718 aa8.56□□□□□ -1.04
USP40-213ENST00000483216 PCBP1Q15365 356 aaKnown RBP eCLIP8.56□□□□□ -1.04
USP40-213ENST00000483216 SLC39A2Q9NP94 309 aa8.56□□□□□ -1.04
USP40-213ENST00000483216 CROTQ9UKG9 612 aa8.56□□□□□ -1.04
USP40-213ENST00000483216 MAPRE3Q9UPY8 281 aa8.56□□□□□ -1.04
USP40-213ENST00000483216 ZKSCAN5Q9Y2L8 839 aa8.56□□□□□ -1.04
USP40-213ENST00000483216 CADPSQ9ULU8 1353 aa8.56□□□□□ -1.04
USP40-213ENST00000483216 RASSF10A6NK89 507 aa8.55□□□□□ -1.04
USP40-213ENST00000483216 H7C1D1 291 aa8.55□□□□□ -1.04
USP40-213ENST00000483216 FOXP2O15409 715 aa8.55□□□□□ -1.04
USP40-213ENST00000483216 PDE8AO60658 829 aa8.55□□□□□ -1.04
USP40-213ENST00000483216 TRIM13O60858 407 aa8.55□□□□□ -1.04
USP40-213ENST00000483216 KRT37O76014 449 aa8.55□□□□□ -1.04
USP40-213ENST00000483216 PTGS1P23219 599 aa8.55□□□□□ -1.04
USP40-213ENST00000483216 IL13P35225 146 aa8.55□□□□□ -1.04
USP40-213ENST00000483216 MLLT6P55198 1093 aaPredicted RBP8.55□□□□□ -1.04
USP40-213ENST00000483216 TMEM132BQ14DG7 1078 aa8.55□□□□□ -1.04
USP40-213ENST00000483216 SPOCD1Q6ZMY3 1216 aa8.55□□□□□ -1.04
USP40-213ENST00000483216 SP8Q8IXZ3 490 aa8.55□□□□□ -1.04
USP40-213ENST00000483216 ASB15Q8WXK1 588 aa8.55□□□□□ -1.04
USP40-213ENST00000483216 ZFP69BQ9UJL9 534 aa8.55□□□□□ -1.04
USP40-213ENST00000483216 ASB1Q9Y576 335 aa8.55□□□□□ -1.04
USP40-213ENST00000483216 DVL2O14641 736 aa8.54□□□□□ -1.04
USP40-213ENST00000483216 MMEP08473 750 aa8.54□□□□□ -1.04
USP40-213ENST00000483216 KCNC1P48547 511 aa8.54□□□□□ -1.04
USP40-213ENST00000483216 KIF11P52732 1056 aa8.54□□□□□ -1.04
USP40-213ENST00000483216 DSG1Q02413 1049 aa8.54□□□□□ -1.04
USP40-213ENST00000483216 CATSPEREQ5SY80 951 aa8.54□□□□□ -1.04
USP40-213ENST00000483216 LCE3BQ5TA77 95 aa8.54□□□□□ -1.04
USP40-213ENST00000483216 PRAMEF18Q5VWM3 479 aa8.54□□□□□ -1.04
USP40-213ENST00000483216 ADAMTS17Q8TE56 1095 aa8.54□□□□□ -1.04
USP40-213ENST00000483216 KCNC2Q96PR1 638 aa8.54□□□□□ -1.04
USP40-213ENST00000483216 ACSS2Q9NR19 701 aa8.54□□□□□ -1.04
USP40-213ENST00000483216 KCND1Q9NSA2 647 aa8.54□□□□□ -1.04
USP40-213ENST00000483216 DDX3XO00571 662 aaKnown RBP eCLIP8.53□□□□□ -1.04
USP40-213ENST00000483216 GAS7O60861 476 aa8.53□□□□□ -1.04
USP40-213ENST00000483216 FBXO21O94952 628 aa8.53□□□□□ -1.04
USP40-213ENST00000483216 IL18BPO95998 194 aa8.53□□□□□ -1.04
USP40-213ENST00000483216 COL6A1P12109 1028 aa8.53□□□□□ -1.04
USP40-213ENST00000483216 BMP7P18075 431 aa8.53□□□□□ -1.04
USP40-213ENST00000483216 GLRBP48167 497 aa8.53□□□□□ -1.04
USP40-213ENST00000483216 FNTBP49356 437 aa8.53□□□□□ -1.04
USP40-213ENST00000483216 ZNF174Q15697 407 aa8.53□□□□□ -1.04
USP40-213ENST00000483216 SMAD2Q15796 467 aaKnown RBP8.53□□□□□ -1.04
USP40-213ENST00000483216 FAM26FQ5R3K3 315 aa8.53□□□□□ -1.04
USP40-213ENST00000483216 CREB3L3Q68CJ9 461 aa8.53□□□□□ -1.04
USP40-213ENST00000483216 ZNF761Q86XN6 746 aaPredicted RBP8.53□□□□□ -1.04
USP40-213ENST00000483216 THNSL2Q86YJ6 484 aa8.53□□□□□ -1.04
USP40-213ENST00000483216 ZCCHC14Q8WYQ9 949 aaKnown RBP8.53□□□□□ -1.04
USP40-213ENST00000483216 GBP4Q96PP9 640 aa8.53□□□□□ -1.04
USP40-213ENST00000483216 SPATA25Q9BR10 227 aa8.53□□□□□ -1.04
USP40-213ENST00000483216 TMX1Q9H3N1 280 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms