RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 HAUS3Q68CZ6 603 aa13.73□□□□□ -0.21
SDC1-206ENST00000482879 TPH2Q8IWU9 490 aa13.73□□□□□ -0.21
SDC1-206ENST00000482879 BANK1Q8NDB2 785 aa13.73□□□□□ -0.21
SDC1-206ENST00000482879 DEFB118Q96PH6 123 aa13.73□□□□□ -0.21
SDC1-206ENST00000482879 HSD17B14Q9BPX1 270 aa13.73□□□□□ -0.21
SDC1-206ENST00000482879 MMTAG2Q9BU76 263 aaKnown RBP13.73□□□□□ -0.21
SDC1-206ENST00000482879 POLR3CQ9BUI4 534 aaPredicted RBP13.73□□□□□ -0.21
SDC1-206ENST00000482879 CCSER1Q9C0I3 900 aa13.73□□□□□ -0.21
SDC1-206ENST00000482879 AZI2Q9H6S1 392 aa13.73□□□□□ -0.21
SDC1-206ENST00000482879 ZNF302Q9NR11 478 aa13.73□□□□□ -0.21
SDC1-206ENST00000482879 FAM13BQ9NYF5 915 aa13.73□□□□□ -0.21
SDC1-206ENST00000482879 HTTP42858 3142 aa13.73□□□□□ -0.21
SDC1-206ENST00000482879 IGKV6D-21A0A0A0MT36 114 aa13.72□□□□□ -0.21
SDC1-206ENST00000482879 LGR5O75473 907 aa13.72□□□□□ -0.21
SDC1-206ENST00000482879 SLITRK3O94933 977 aa13.72□□□□□ -0.21
SDC1-206ENST00000482879 MYL3P08590 195 aa13.72□□□□□ -0.21
SDC1-206ENST00000482879 SPATA31C1P0DKV0 1188 aa13.72□□□□□ -0.21
SDC1-206ENST00000482879 HOXD8P13378 290 aaPredicted RBP13.72□□□□□ -0.21
SDC1-206ENST00000482879 RPA1P27694 616 aa13.72□□□□□ -0.21
SDC1-206ENST00000482879 MCM4P33991 863 aa13.72□□□□□ -0.21
SDC1-206ENST00000482879 QARSP47897 775 aaKnown RBP13.72□□□□□ -0.21
SDC1-206ENST00000482879 STAT5BP51692 787 aa13.72□□□□□ -0.21
SDC1-206ENST00000482879 PSMC5P62195 406 aa13.72□□□□□ -0.21
SDC1-206ENST00000482879 NKX3-2P78367 333 aa13.72□□□□□ -0.21
SDC1-206ENST00000482879 PDXDC2PQ6P474 469 aa13.72□□□□□ -0.21
SDC1-206ENST00000482879 RNF180Q86T96 592 aa13.72□□□□□ -0.21
SDC1-206ENST00000482879 CATSPER3Q86XQ3 398 aa13.72□□□□□ -0.21
SDC1-206ENST00000482879 CCDC60Q8IWA6 550 aaPredicted RBP13.72□□□□□ -0.21
SDC1-206ENST00000482879 FSIP1Q8NA03 581 aa13.72□□□□□ -0.21
SDC1-206ENST00000482879 ARRDC4Q8NCT1 418 aa13.72□□□□□ -0.21
SDC1-206ENST00000482879 KLHDC9Q8NEP7 349 aa13.72□□□□□ -0.21
SDC1-206ENST00000482879 RASSF8Q8NHQ8 419 aa13.72□□□□□ -0.21
SDC1-206ENST00000482879 NEK9Q8TD19 979 aa13.72□□□□□ -0.21
SDC1-206ENST00000482879 GLG1Q92896 1179 aa13.72□□□□□ -0.21
SDC1-206ENST00000482879 ATP6V0A1Q93050 837 aa13.72□□□□□ -0.21
SDC1-206ENST00000482879 CALML4Q96GE6 196 aa13.72□□□□□ -0.21
SDC1-206ENST00000482879 CDK5RAP3Q96JB5 506 aa13.72□□□□□ -0.21
SDC1-206ENST00000482879 PCYT2Q99447 389 aa13.72□□□□□ -0.21
SDC1-206ENST00000482879 PLIN2Q99541 437 aa13.72□□□□□ -0.21
SDC1-206ENST00000482879 PANK2Q9BZ23 570 aa13.72□□□□□ -0.21
SDC1-206ENST00000482879 SMARCAD1Q9H4L7 1026 aa13.72□□□□□ -0.21
SDC1-206ENST00000482879 TUFT1Q9NNX1 390 aa13.72□□□□□ -0.21
SDC1-206ENST00000482879 CCDC39Q9UFE4 941 aa13.72□□□□□ -0.21
SDC1-206ENST00000482879 KDM3AQ9Y4C1 1321 aa13.71□□□□□ -0.21
SDC1-206ENST00000482879 A0A1B0GVL5 298 aa13.71□□□□□ -0.21
SDC1-206ENST00000482879 POTEB3A0JP26 581 aa13.71□□□□□ -0.21
SDC1-206ENST00000482879 SLC26A4O43511 780 aa13.71□□□□□ -0.21
SDC1-206ENST00000482879 KPNA6O60684 536 aa13.71□□□□□ -0.21
SDC1-206ENST00000482879 DKC1O60832 514 aaKnown RBP eCLIP13.71□□□□□ -0.21
SDC1-206ENST00000482879 LGALS2P05162 132 aa13.71□□□□□ -0.21
SDC1-206ENST00000482879 ZNF286BP0CG31 522 aa13.71□□□□□ -0.21
SDC1-206ENST00000482879 CST5P28325 142 aaPredicted RBP13.71□□□□□ -0.21
SDC1-206ENST00000482879 UBE2HP62256 183 aa13.71□□□□□ -0.21
SDC1-206ENST00000482879 KARSQ15046 597 aaKnown RBP13.71□□□□□ -0.21
SDC1-206ENST00000482879 LRRC41Q15345 812 aa13.71□□□□□ -0.21
SDC1-206ENST00000482879 KCNA10Q16322 511 aa13.71□□□□□ -0.21
SDC1-206ENST00000482879 ECM1Q16610 540 aa13.71□□□□□ -0.21
SDC1-206ENST00000482879 UGCGQ16739 394 aa13.71□□□□□ -0.21
SDC1-206ENST00000482879 POTEBQ6S5H4 581 aa13.71□□□□□ -0.21
SDC1-206ENST00000482879 PLPPR4Q7Z2D5 763 aa13.71□□□□□ -0.21
SDC1-206ENST00000482879 TRIM50Q86XT4 487 aa13.71□□□□□ -0.21
SDC1-206ENST00000482879 CKAP2LQ8IYA6 745 aa13.71□□□□□ -0.21
SDC1-206ENST00000482879 PCSK9Q8NBP7 692 aaKnown RBP13.71□□□□□ -0.21
SDC1-206ENST00000482879 MRPS27Q92552 414 aaKnown RBP13.71□□□□□ -0.21
SDC1-206ENST00000482879 PNMA5Q96PV4 448 aa13.71□□□□□ -0.21
SDC1-206ENST00000482879 LXNQ9BS40 222 aa13.71□□□□□ -0.21
SDC1-206ENST00000482879 ZSWIM4Q9H7M6 989 aa13.71□□□□□ -0.21
SDC1-206ENST00000482879 LMBRD1Q9NUN5 540 aa13.71□□□□□ -0.21
SDC1-206ENST00000482879 KIAA1024Q9UPX6 916 aa13.71□□□□□ -0.21
SDC1-206ENST00000482879 LOXHD1Q8IVV2 1947 aa13.7□□□□□ -0.22
SDC1-206ENST00000482879 EMSYQ7Z589 1322 aa13.7□□□□□ -0.22
SDC1-206ENST00000482879 SGPL1O95470 568 aa13.7□□□□□ -0.22
SDC1-206ENST00000482879 TFRCP02786 760 aaKnown RBP13.7□□□□□ -0.22
SDC1-206ENST00000482879 GJB1P08034 283 aa13.7□□□□□ -0.22
SDC1-206ENST00000482879 PFKFB1P16118 471 aa13.7□□□□□ -0.22
SDC1-206ENST00000482879 MUTP22033 750 aa13.7□□□□□ -0.22
SDC1-206ENST00000482879 GRB10Q13322 594 aa13.7□□□□□ -0.22
SDC1-206ENST00000482879 HYIQ5T013 277 aa13.7□□□□□ -0.22
SDC1-206ENST00000482879 RRAGBQ5VZM2 374 aa13.7□□□□□ -0.22
SDC1-206ENST00000482879 TRMT1LQ7Z2T5 733 aaKnown RBP13.7□□□□□ -0.22
SDC1-206ENST00000482879 PDILTQ8N807 584 aa13.7□□□□□ -0.22
SDC1-206ENST00000482879 AFAP1L1Q8TED9 768 aa13.7□□□□□ -0.22
SDC1-206ENST00000482879 C16orf70Q9BSU1 422 aa13.7□□□□□ -0.22
SDC1-206ENST00000482879 TMEM106CQ9BVX2 250 aa13.7□□□□□ -0.22
SDC1-206ENST00000482879 NT5C3AQ9H0P0 336 aa13.7□□□□□ -0.22
SDC1-206ENST00000482879 GOLPH3LQ9H4A5 285 aa13.7□□□□□ -0.22
SDC1-206ENST00000482879 DDX19AQ9NUU7 478 aaKnown RBP13.7□□□□□ -0.22
SDC1-206ENST00000482879 WRAP73Q9P2S5 460 aaPredicted RBP13.7□□□□□ -0.22
SDC1-206ENST00000482879 KCNH3Q9ULD8 1083 aa13.7□□□□□ -0.22
SDC1-206ENST00000482879 MAFBQ9Y5Q3 323 aaPredicted RBP13.7□□□□□ -0.22
SDC1-206ENST00000482879 CENPFP49454 3210 aa13.7□□□□□ -0.22
SDC1-206ENST00000482879 IGSF9BQ9UPX0 1349 aa13.69□□□□□ -0.22
SDC1-206ENST00000482879 TRIP12Q14669 1992 aaPredicted RBP13.69□□□□□ -0.22
SDC1-206ENST00000482879 A0A087WWV3 80 aa13.69□□□□□ -0.22
SDC1-206ENST00000482879 FAM237AA0A1B0GTK4 181 aa13.69□□□□□ -0.22
SDC1-206ENST00000482879 DDX11L8A8MPP1 907 aa13.69□□□□□ -0.22
SDC1-206ENST00000482879 H3BRB1 525 aa13.69□□□□□ -0.22
SDC1-206ENST00000482879 POLR2DO15514 142 aaKnown RBP13.69□□□□□ -0.22
SDC1-206ENST00000482879 ZNF862O60290 1169 aa13.69□□□□□ -0.22
SDC1-206ENST00000482879 ASGR1P07306 291 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms