RNA–Protein interactions for RNA: ENST00000477836.1

SMARCB1-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 2

Gene SMARCB1, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-206ENST00000477836 PXMP2Q9NR77 195 aa11.32□□□□□ -0.6
SMARCB1-206ENST00000477836 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.32□□□□□ -0.6
SMARCB1-206ENST00000477836 PCDHB12Q9Y5F1 795 aa11.32□□□□□ -0.6
SMARCB1-206ENST00000477836 USP24Q9UPU5 2620 aa11.31□□□□□ -0.6
SMARCB1-206ENST00000477836 STK25O00506 426 aa11.31□□□□□ -0.6
SMARCB1-206ENST00000477836 RNF113AO15541 343 aaKnown RBP11.31□□□□□ -0.6
SMARCB1-206ENST00000477836 FGF18O76093 207 aa11.31□□□□□ -0.6
SMARCB1-206ENST00000477836 PDHBP11177 359 aa11.31□□□□□ -0.6
SMARCB1-206ENST00000477836 TOP1P11387 765 aaKnown RBP11.31□□□□□ -0.6
SMARCB1-206ENST00000477836 MYCLP12524 364 aaPredicted RBP11.31□□□□□ -0.6
SMARCB1-206ENST00000477836 IBSPP21815 317 aaPredicted RBP11.31□□□□□ -0.6
SMARCB1-206ENST00000477836 UBA1P22314 1058 aaKnown RBP11.31□□□□□ -0.6
SMARCB1-206ENST00000477836 ATXN1P54253 815 aaKnown RBP11.31□□□□□ -0.6
SMARCB1-206ENST00000477836 SP2Q02086 613 aa11.31□□□□□ -0.6
SMARCB1-206ENST00000477836 MGAT3Q09327 533 aa11.31□□□□□ -0.6
SMARCB1-206ENST00000477836 KIAA0319Q5VV43 1072 aa11.31□□□□□ -0.6
SMARCB1-206ENST00000477836 KCNV1Q6PIU1 500 aa11.31□□□□□ -0.6
SMARCB1-206ENST00000477836 MCF2L2Q86YR7 1114 aa11.31□□□□□ -0.6
SMARCB1-206ENST00000477836 NPAS4Q8IUM7 802 aa11.31□□□□□ -0.6
SMARCB1-206ENST00000477836 CRIPAKQ8N1N5 446 aa11.31□□□□□ -0.6
SMARCB1-206ENST00000477836 KBTBD3Q8NAB2 608 aa11.31□□□□□ -0.6
SMARCB1-206ENST00000477836 TDRD5Q8NAT2 981 aaKnown RBP11.31□□□□□ -0.6
SMARCB1-206ENST00000477836 NECTIN4Q96NY8 510 aa11.31□□□□□ -0.6
SMARCB1-206ENST00000477836 TMEM260Q9NX78 707 aa11.31□□□□□ -0.6
SMARCB1-206ENST00000477836 ABCB11O95342 1321 aa11.31□□□□□ -0.6
SMARCB1-206ENST00000477836 CCDC171Q6TFL3 1326 aa11.31□□□□□ -0.6
SMARCB1-206ENST00000477836 ATRXP46100 2492 aa11.3□□□□□ -0.6
SMARCB1-206ENST00000477836 NOP56O00567 594 aaKnown RBP11.3□□□□□ -0.6
SMARCB1-206ENST00000477836 FSCN2O14926 492 aa11.3□□□□□ -0.6
SMARCB1-206ENST00000477836 RAB11FIP3O75154 756 aa11.3□□□□□ -0.6
SMARCB1-206ENST00000477836 WEE2P0C1S8 567 aa11.3□□□□□ -0.6
SMARCB1-206ENST00000477836 STAG3L1P0CL83 205 aa11.3□□□□□ -0.6
SMARCB1-206ENST00000477836 ADAM17P78536 824 aa11.3□□□□□ -0.6
SMARCB1-206ENST00000477836 ZNF543Q08ER8 600 aa11.3□□□□□ -0.6
SMARCB1-206ENST00000477836 APOBRQ0VD83 1088 aa11.3□□□□□ -0.6
SMARCB1-206ENST00000477836 TPRNQ4KMQ1 711 aa11.3□□□□□ -0.6
SMARCB1-206ENST00000477836 FBXO47Q5MNV8 452 aa11.3□□□□□ -0.6
SMARCB1-206ENST00000477836 PDE12Q6L8Q7 609 aaKnown RBP11.3□□□□□ -0.6
SMARCB1-206ENST00000477836 ZC3H14Q6PJT7 736 aaKnown RBP11.3□□□□□ -0.6
SMARCB1-206ENST00000477836 RUFY4Q6ZNE9 571 aa11.3□□□□□ -0.6
SMARCB1-206ENST00000477836 TSHZ1Q6ZSZ6 1077 aa11.3□□□□□ -0.6
SMARCB1-206ENST00000477836 RTN4RL1Q86UN2 441 aaPredicted RBP11.3□□□□□ -0.6
SMARCB1-206ENST00000477836 SMC5Q8IY18 1101 aa11.3□□□□□ -0.6
SMARCB1-206ENST00000477836 THNSL1Q8IYQ7 743 aa11.3□□□□□ -0.6
SMARCB1-206ENST00000477836 ZDHHC14Q8IZN3 488 aa11.3□□□□□ -0.6
SMARCB1-206ENST00000477836 SIX5Q8N196 739 aa11.3□□□□□ -0.6
SMARCB1-206ENST00000477836 RASGRP4Q8TDF6 673 aa11.3□□□□□ -0.6
SMARCB1-206ENST00000477836 LMBR1Q8WVP7 490 aa11.3□□□□□ -0.6
SMARCB1-206ENST00000477836 MAF1Q9H063 256 aa11.3□□□□□ -0.6
SMARCB1-206ENST00000477836 ADAM7Q9H2U9 754 aa11.3□□□□□ -0.6
SMARCB1-206ENST00000477836 CPVLQ9H3G5 476 aa11.3□□□□□ -0.6
SMARCB1-206ENST00000477836 ERVK-5Q9HDB9 667 aa11.3□□□□□ -0.6
SMARCB1-206ENST00000477836 AAASQ9NRG9 546 aa11.3□□□□□ -0.6
SMARCB1-206ENST00000477836 FBXL21Q9UKT6 434 aa11.3□□□□□ -0.6
SMARCB1-206ENST00000477836 LRFN2Q9ULH4 789 aa11.3□□□□□ -0.6
SMARCB1-206ENST00000477836 SPTBN2O15020 2390 aa11.3□□□□□ -0.6
SMARCB1-206ENST00000477836 ZFYP08048 801 aaPredicted RBP11.29□□□□□ -0.6
SMARCB1-206ENST00000477836 GOLGA8HP0CJ92 632 aa11.29□□□□□ -0.6
SMARCB1-206ENST00000477836 HSPD1P10809 573 aaKnown RBP11.29□□□□□ -0.6
SMARCB1-206ENST00000477836 SDHBP21912 280 aa11.29□□□□□ -0.6
SMARCB1-206ENST00000477836 CD52P31358 61 aa11.29□□□□□ -0.6
SMARCB1-206ENST00000477836 ITIH3Q06033 890 aa11.29□□□□□ -0.6
SMARCB1-206ENST00000477836 CDC37Q16543 378 aaPredicted RBP11.29□□□□□ -0.6
SMARCB1-206ENST00000477836 PLCD3Q8N3E9 789 aa11.29□□□□□ -0.6
SMARCB1-206ENST00000477836 CASP10Q92851 521 aa11.29□□□□□ -0.6
SMARCB1-206ENST00000477836 GPKOWQ92917 476 aaPredicted RBP eCLIP11.29□□□□□ -0.6
SMARCB1-206ENST00000477836 ZFP91Q96JP5 570 aaPredicted RBP11.29□□□□□ -0.6
SMARCB1-206ENST00000477836 SEC62Q99442 399 aaKnown RBP11.29□□□□□ -0.6
SMARCB1-206ENST00000477836 TCF25Q9BQ70 676 aa11.29□□□□□ -0.6
SMARCB1-206ENST00000477836 USP26Q9BXU7 913 aa11.29□□□□□ -0.6
SMARCB1-206ENST00000477836 UBA5Q9GZZ9 404 aa11.29□□□□□ -0.6
SMARCB1-206ENST00000477836 BCAS3Q9H6U6 928 aa11.29□□□□□ -0.6
SMARCB1-206ENST00000477836 AGO3Q9H9G7 860 aaKnown RBP11.29□□□□□ -0.6
SMARCB1-206ENST00000477836 ENTPD7Q9NQZ7 604 aa11.29□□□□□ -0.6
SMARCB1-206ENST00000477836 OTOGLQ3ZCN5 2332 aa11.28□□□□□ -0.6
SMARCB1-206ENST00000477836 HIDE1A8MVS5 230 aa11.28□□□□□ -0.6
SMARCB1-206ENST00000477836 CFBP00751 764 aa11.28□□□□□ -0.6
SMARCB1-206ENST00000477836 SCG2P13521 617 aa11.28□□□□□ -0.6
SMARCB1-206ENST00000477836 MTHFRP42898 656 aa11.28□□□□□ -0.6
SMARCB1-206ENST00000477836 UTP14CQ5TAP6 766 aaKnown RBP11.28□□□□□ -0.6
SMARCB1-206ENST00000477836 RSPH3Q86UC2 560 aa11.28□□□□□ -0.6
SMARCB1-206ENST00000477836 TRIM50Q86XT4 487 aa11.28□□□□□ -0.6
SMARCB1-206ENST00000477836 PDCD2LQ9BRP1 358 aa11.28□□□□□ -0.6
SMARCB1-206ENST00000477836 FTHL17Q9BXU8 183 aa11.28□□□□□ -0.6
SMARCB1-206ENST00000477836 TOMM22Q9NS69 142 aa11.28□□□□□ -0.6
SMARCB1-206ENST00000477836 RNF216Q9NWF9 866 aaPredicted RBP11.28□□□□□ -0.6
SMARCB1-206ENST00000477836 DBR1Q9UK59 544 aaKnown RBP11.28□□□□□ -0.6
SMARCB1-206ENST00000477836 ZNF215Q9UL58 517 aaPredicted RBP11.28□□□□□ -0.6
SMARCB1-206ENST00000477836 CDY2AQ9Y6F7 541 aa11.28□□□□□ -0.6
SMARCB1-206ENST00000477836 NRCAMQ92823 1304 aa11.28□□□□□ -0.6
SMARCB1-206ENST00000477836 FRYQ5TBA9 3013 aa11.27□□□□□ -0.61
SMARCB1-206ENST00000477836 DCDC2BA2VCK2 349 aa11.27□□□□□ -0.61
SMARCB1-206ENST00000477836 ADRB1P08588 477 aa11.27□□□□□ -0.61
SMARCB1-206ENST00000477836 SP9P0CG40 484 aa11.27□□□□□ -0.61
SMARCB1-206ENST00000477836 TGFB3P10600 412 aa11.27□□□□□ -0.61
SMARCB1-206ENST00000477836 RFX1P22670 979 aa11.27□□□□□ -0.61
SMARCB1-206ENST00000477836 TDGQ13569 410 aa11.27□□□□□ -0.61
SMARCB1-206ENST00000477836 RRP12Q5JTH9 1297 aaKnown RBP11.27□□□□□ -0.61
SMARCB1-206ENST00000477836 SPECC1Q5M775 1068 aa11.27□□□□□ -0.61
SMARCB1-206ENST00000477836 TAF2Q6P1X5 1199 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms