RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 KCTD1Q719H9 257 aa5.73□□□□□ -1.49
USP4-209ENST00000475873 DHX37Q8IY37 1157 aaKnown RBP5.73□□□□□ -1.49
USP4-209ENST00000475873 PJA1Q8NG27 643 aa5.73□□□□□ -1.49
USP4-209ENST00000475873 PPTC7Q8NI37 304 aa5.73□□□□□ -1.49
USP4-209ENST00000475873 GPR152Q8TDT2 470 aa5.73□□□□□ -1.49
USP4-209ENST00000475873 STAG1Q8WVM7 1258 aa5.73□□□□□ -1.49
USP4-209ENST00000475873 ATP6V0A1Q93050 837 aa5.73□□□□□ -1.49
USP4-209ENST00000475873 EMID1Q96A84 441 aaPredicted RBP5.73□□□□□ -1.49
USP4-209ENST00000475873 RNPEPQ9H4A4 650 aa5.73□□□□□ -1.49
USP4-209ENST00000475873 BCAS3Q9H6U6 928 aa5.73□□□□□ -1.49
USP4-209ENST00000475873 RXFP3Q9NSD7 469 aa5.73□□□□□ -1.49
USP4-209ENST00000475873 CACNA2D2Q9NY47 1150 aa5.73□□□□□ -1.49
USP4-209ENST00000475873 MTMR4Q9NYA4 1195 aa5.73□□□□□ -1.49
USP4-209ENST00000475873 COL20A1Q9P218 1284 aa5.73□□□□□ -1.49
USP4-209ENST00000475873 DDX41Q9UJV9 622 aaKnown RBP5.73□□□□□ -1.49
USP4-209ENST00000475873 SIT1Q9Y3P8 196 aa5.73□□□□□ -1.49
USP4-209ENST00000475873 MTF2Q9Y483 593 aaPredicted RBP5.73□□□□□ -1.49
USP4-209ENST00000475873 TELO2Q9Y4R8 837 aa5.73□□□□□ -1.49
USP4-209ENST00000475873 PCDHGA2Q9Y5H1 932 aa5.73□□□□□ -1.49
USP4-209ENST00000475873 TICRRQ7Z2Z1 1910 aa5.73□□□□□ -1.49
USP4-209ENST00000475873 CACNA1EQ15878 2313 aa5.73□□□□□ -1.49
USP4-209ENST00000475873 SORBS3O60504 671 aa5.72□□□□□ -1.49
USP4-209ENST00000475873 PLA2G6O60733 806 aa5.72□□□□□ -1.49
USP4-209ENST00000475873 CLASP2O75122 1294 aaKnown RBP5.72□□□□□ -1.49
USP4-209ENST00000475873 CAND2O75155 1236 aa5.72□□□□□ -1.49
USP4-209ENST00000475873 TDGF1P13385 188 aa5.72□□□□□ -1.49
USP4-209ENST00000475873 MCCP23508 829 aa5.72□□□□□ -1.49
USP4-209ENST00000475873 CSTF1Q05048 431 aaKnown RBP5.72□□□□□ -1.49
USP4-209ENST00000475873 G3BP1Q13283 466 aaKnown RBP eCLIP5.72□□□□□ -1.49
USP4-209ENST00000475873 TPRNQ4KMQ1 711 aa5.72□□□□□ -1.49
USP4-209ENST00000475873 TTBK2Q6IQ55 1244 aa5.72□□□□□ -1.49
USP4-209ENST00000475873 CES5AQ6NT32 575 aa5.72□□□□□ -1.49
USP4-209ENST00000475873 RUFY4Q6ZNE9 571 aa5.72□□□□□ -1.49
USP4-209ENST00000475873 PRR23CQ6ZRP0 262 aa5.72□□□□□ -1.49
USP4-209ENST00000475873 FAM160B2Q86V87 743 aa5.72□□□□□ -1.49
USP4-209ENST00000475873 PLCD3Q8N3E9 789 aa5.72□□□□□ -1.49
USP4-209ENST00000475873 COLGALT1Q8NBJ5 622 aa5.72□□□□□ -1.49
USP4-209ENST00000475873 TBC1D5Q92609 795 aa5.72□□□□□ -1.49
USP4-209ENST00000475873 GMCL1Q96IK5 515 aa5.72□□□□□ -1.49
USP4-209ENST00000475873 TCF25Q9BQ70 676 aa5.72□□□□□ -1.49
USP4-209ENST00000475873 KATNAL1Q9BW62 490 aa5.72□□□□□ -1.49
USP4-209ENST00000475873 RANBP17Q9H2T7 1088 aaKnown RBP5.72□□□□□ -1.49
USP4-209ENST00000475873 ATP8A2Q9NTI2 1148 aa5.72□□□□□ -1.49
USP4-209ENST00000475873 SEMA4GQ9NTN9 838 aa5.72□□□□□ -1.49
USP4-209ENST00000475873 TMEM260Q9NX78 707 aa5.72□□□□□ -1.49
USP4-209ENST00000475873 DBR1Q9UK59 544 aaKnown RBP5.72□□□□□ -1.49
USP4-209ENST00000475873 FBXO4Q9UKT5 387 aa5.72□□□□□ -1.49
USP4-209ENST00000475873 F5P12259 2224 aa5.72□□□□□ -1.49
USP4-209ENST00000475873 ACACAQ13085 2346 aa5.71□□□□□ -1.49
USP4-209ENST00000475873 PLIN4Q96Q06 1357 aa5.71□□□□□ -1.5
USP4-209ENST00000475873 DOCK6Q96HP0 2047 aa5.71□□□□□ -1.5
USP4-209ENST00000475873 FSD2A1L4K1 749 aa5.71□□□□□ -1.5
USP4-209ENST00000475873 C17orf102A2RUQ5 167 aa5.71□□□□□ -1.5
USP4-209ENST00000475873 C2orf71A6NGG8 1288 aa5.71□□□□□ -1.5
USP4-209ENST00000475873 TBC1D4O60343 1298 aa5.71□□□□□ -1.5
USP4-209ENST00000475873 PRDM1O75626 825 aa5.71□□□□□ -1.5
USP4-209ENST00000475873 EPCAMP16422 314 aa5.71□□□□□ -1.5
USP4-209ENST00000475873 PDE4AP27815 886 aa5.71□□□□□ -1.5
USP4-209ENST00000475873 SLC16A2P36021 539 aa5.71□□□□□ -1.5
USP4-209ENST00000475873 PBX3P40426 434 aa5.71□□□□□ -1.5
USP4-209ENST00000475873 DDX10Q13206 875 aaKnown RBP5.71□□□□□ -1.5
USP4-209ENST00000475873 POLA2Q14181 598 aa5.71□□□□□ -1.5
USP4-209ENST00000475873 FBXO47Q5MNV8 452 aa5.71□□□□□ -1.5
USP4-209ENST00000475873 XRRA1Q6P2D8 792 aa5.71□□□□□ -1.5
USP4-209ENST00000475873 TMED8Q6PL24 325 aaPredicted RBP5.71□□□□□ -1.5
USP4-209ENST00000475873 TMC5Q6UXY8 1006 aa5.71□□□□□ -1.5
USP4-209ENST00000475873 NPAS4Q8IUM7 802 aa5.71□□□□□ -1.5
USP4-209ENST00000475873 SLC44A3Q8N4M1 653 aa5.71□□□□□ -1.5
USP4-209ENST00000475873 ST13P5Q8NFI4 369 aaPredicted RBP5.71□□□□□ -1.5
USP4-209ENST00000475873 DNERQ8NFT8 737 aa5.71□□□□□ -1.5
USP4-209ENST00000475873 CHURC1Q8WUH1 139 aa5.71□□□□□ -1.5
USP4-209ENST00000475873 ATRIPQ8WXE1 791 aa5.71□□□□□ -1.5
USP4-209ENST00000475873 ZCCHC14Q8WYQ9 949 aaKnown RBP5.71□□□□□ -1.5
USP4-209ENST00000475873 CASP10Q92851 521 aa5.71□□□□□ -1.5
USP4-209ENST00000475873 CWH43Q9H720 699 aa5.71□□□□□ -1.5
USP4-209ENST00000475873 ARHGEF3Q9NR81 526 aa5.71□□□□□ -1.5
USP4-209ENST00000475873 SETD4Q9NVD3 440 aa5.71□□□□□ -1.5
USP4-209ENST00000475873 ZSCAN32Q9NX65 697 aa5.71□□□□□ -1.5
USP4-209ENST00000475873 SYNPO2Q9UMS6 1093 aa5.71□□□□□ -1.5
USP4-209ENST00000475873 LAMA4Q16363 1823 aa5.7□□□□□ -1.5
USP4-209ENST00000475873 GIPC1O14908 333 aa5.7□□□□□ -1.5
USP4-209ENST00000475873 MGEA5O60502 916 aa5.7□□□□□ -1.5
USP4-209ENST00000475873 KCNK5O95279 499 aa5.7□□□□□ -1.5
USP4-209ENST00000475873 TTLL1O95922 423 aa5.7□□□□□ -1.5
USP4-209ENST00000475873 CAPNS1P04632 268 aa5.7□□□□□ -1.5
USP4-209ENST00000475873 SRGAP2BP0DMP2 458 aa5.7□□□□□ -1.5
USP4-209ENST00000475873 SRFP11831 508 aa5.7□□□□□ -1.5
USP4-209ENST00000475873 CD52P31358 61 aa5.7□□□□□ -1.5
USP4-209ENST00000475873 ADD2P35612 726 aa5.7□□□□□ -1.5
USP4-209ENST00000475873 SLC1A4P43007 532 aa5.7□□□□□ -1.5
USP4-209ENST00000475873 RBM25P49756 843 aaKnown RBP5.7□□□□□ -1.5
USP4-209ENST00000475873 STARD6P59095 220 aa5.7□□□□□ -1.5
USP4-209ENST00000475873 SP2Q02086 613 aa5.7□□□□□ -1.5
USP4-209ENST00000475873 IKQ13123 557 aaPredicted RBP5.7□□□□□ -1.5
USP4-209ENST00000475873 CSRP2Q16527 193 aa5.7□□□□□ -1.5
USP4-209ENST00000475873 FAM102BQ5T8I3 360 aa5.7□□□□□ -1.5
USP4-209ENST00000475873 SYDE2Q5VT97 1194 aa5.7□□□□□ -1.5
USP4-209ENST00000475873 MYSM1Q5VVJ2 828 aa5.7□□□□□ -1.5
USP4-209ENST00000475873 LARP1BQ659C4 914 aaKnown RBP5.7□□□□□ -1.5
USP4-209ENST00000475873 PDE12Q6L8Q7 609 aaKnown RBP5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms