RNA–Protein interactions for RNA: ENST00000467124.1

VPS13A-209, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5

Gene VPS13A, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-209ENST00000467124 PCDHGA8Q9Y5G5 932 aa5.43□□□□□ -1.54
VPS13A-209ENST00000467124 PCDHGA7Q9Y5G6 932 aa5.43□□□□□ -1.54
VPS13A-209ENST00000467124 PCDHGA6Q9Y5G7 932 aa5.43□□□□□ -1.54
VPS13A-209ENST00000467124 PCDHGA3Q9Y5H0 932 aa5.43□□□□□ -1.54
VPS13A-209ENST00000467124 PCDHGA2Q9Y5H1 932 aa5.43□□□□□ -1.54
VPS13A-209ENST00000467124 SPO11Q9Y5K1 396 aa5.43□□□□□ -1.54
VPS13A-209ENST00000467124 ATP23Q9Y6H3 246 aa5.43□□□□□ -1.54
VPS13A-209ENST00000467124 PRAMEF25A6NGN4 478 aa5.42□□□□□ -1.54
VPS13A-209ENST00000467124 FAM90A27PA6NNH2 459 aa5.42□□□□□ -1.54
VPS13A-209ENST00000467124 KRIT1O00522 736 aa5.42□□□□□ -1.54
VPS13A-209ENST00000467124 ABLIM3O94929 683 aa5.42□□□□□ -1.54
VPS13A-209ENST00000467124 GNALP38405 381 aa5.42□□□□□ -1.54
VPS13A-209ENST00000467124 SMAD3P84022 425 aaKnown RBP5.42□□□□□ -1.54
VPS13A-209ENST00000467124 TUSC3Q13454 348 aa5.42□□□□□ -1.54
VPS13A-209ENST00000467124 LRRC32Q14392 662 aa5.42□□□□□ -1.54
VPS13A-209ENST00000467124 SMAD2Q15796 467 aaKnown RBP5.42□□□□□ -1.54
VPS13A-209ENST00000467124 MAP9Q49MG5 647 aa5.42□□□□□ -1.54
VPS13A-209ENST00000467124 FIGNQ5HY92 759 aa5.42□□□□□ -1.54
VPS13A-209ENST00000467124 BTBD8Q5XKL5 378 aa5.42□□□□□ -1.54
VPS13A-209ENST00000467124 TP53INP2Q8IXH6 220 aa5.42□□□□□ -1.54
VPS13A-209ENST00000467124 PHOSPHO1Q8TCT1 267 aa5.42□□□□□ -1.54
VPS13A-209ENST00000467124 SEMA4AQ9H3S1 761 aa5.42□□□□□ -1.54
VPS13A-209ENST00000467124 BCAS3Q9H6U6 928 aa5.42□□□□□ -1.54
VPS13A-209ENST00000467124 SLC6A20Q9NP91 592 aa5.42□□□□□ -1.54
VPS13A-209ENST00000467124 NUDT5Q9UKK9 219 aa5.42□□□□□ -1.54
VPS13A-209ENST00000467124 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP5.41□□□□□ -1.54
VPS13A-209ENST00000467124 PNLIPP16233 465 aa5.41□□□□□ -1.54
VPS13A-209ENST00000467124 LSP1P33241 339 aa5.41□□□□□ -1.54
VPS13A-209ENST00000467124 HTRA3P83110 453 aa5.41□□□□□ -1.54
VPS13A-209ENST00000467124 CT83Q5H943 113 aa5.41□□□□□ -1.54
VPS13A-209ENST00000467124 FAM102BQ5T8I3 360 aa5.41□□□□□ -1.54
VPS13A-209ENST00000467124 KSR2Q6VAB6 950 aa5.41□□□□□ -1.54
VPS13A-209ENST00000467124 NLRX1Q86UT6 975 aa5.41□□□□□ -1.54
VPS13A-209ENST00000467124 RASSF3Q86WH2 238 aa5.41□□□□□ -1.54
VPS13A-209ENST00000467124 NLGN4XQ8N0W4 816 aa5.41□□□□□ -1.54
VPS13A-209ENST00000467124 UHMK1Q8TAS1 419 aaKnown RBP5.41□□□□□ -1.54
VPS13A-209ENST00000467124 SEC14L1Q92503 715 aa5.41□□□□□ -1.54
VPS13A-209ENST00000467124 SLC2A13Q96QE2 648 aa5.41□□□□□ -1.54
VPS13A-209ENST00000467124 MENTQ9BUN1 341 aa5.41□□□□□ -1.54
VPS13A-209ENST00000467124 KRTAP9-2Q9BYQ4 174 aa5.41□□□□□ -1.54
VPS13A-209ENST00000467124 ANO3Q9BYT9 981 aa5.41□□□□□ -1.54
VPS13A-209ENST00000467124 ZDHHC5Q9C0B5 715 aa5.41□□□□□ -1.54
VPS13A-209ENST00000467124 PDGFDQ9GZP0 370 aaPredicted RBP5.41□□□□□ -1.54
VPS13A-209ENST00000467124 AP5M1Q9H0R1 490 aa5.41□□□□□ -1.54
VPS13A-209ENST00000467124 QRSL1Q9H0R6 528 aaKnown RBP5.41□□□□□ -1.54
VPS13A-209ENST00000467124 MBNL3Q9NUK0 354 aaKnown RBP5.41□□□□□ -1.54
VPS13A-209ENST00000467124 C19orf73Q9NVV2 129 aa5.41□□□□□ -1.54
VPS13A-209ENST00000467124 MYOTQ9UBF9 498 aa5.41□□□□□ -1.54
VPS13A-209ENST00000467124 GPR160Q9UJ42 338 aa5.41□□□□□ -1.54
VPS13A-209ENST00000467124 MSRAQ9UJ68 235 aa5.41□□□□□ -1.54
VPS13A-209ENST00000467124 CTNND2Q9UQB3 1225 aa5.41□□□□□ -1.54
VPS13A-209ENST00000467124 ZNF652Q9Y2D9 606 aa5.41□□□□□ -1.54
VPS13A-209ENST00000467124 ZC3H12DA2A288 527 aaKnown RBP5.4□□□□□ -1.54
VPS13A-209ENST00000467124 RASSF10A6NK89 507 aa5.4□□□□□ -1.54
VPS13A-209ENST00000467124 VSTM5A8MXK1 200 aa5.4□□□□□ -1.54
VPS13A-209ENST00000467124 BUB1BO60566 1050 aaPredicted RBP5.4□□□□□ -1.54
VPS13A-209ENST00000467124 APOL3O95236 402 aa5.4□□□□□ -1.54
VPS13A-209ENST00000467124 MMEP08473 750 aa5.4□□□□□ -1.54
VPS13A-209ENST00000467124 GLI4P10075 376 aa5.4□□□□□ -1.54
VPS13A-209ENST00000467124 MYBP10242 640 aa5.4□□□□□ -1.54
VPS13A-209ENST00000467124 OSMP13725 252 aa5.4□□□□□ -1.54
VPS13A-209ENST00000467124 PTPN1P18031 435 aaKnown RBP5.4□□□□□ -1.54
VPS13A-209ENST00000467124 GJA4P35212 333 aa5.4□□□□□ -1.54
VPS13A-209ENST00000467124 AFMP43652 599 aa5.4□□□□□ -1.54
VPS13A-209ENST00000467124 GPR3P46089 330 aa5.4□□□□□ -1.54
VPS13A-209ENST00000467124 CYP4F8P98187 520 aa5.4□□□□□ -1.54
VPS13A-209ENST00000467124 SRSF2Q01130 221 aaKnown RBP5.4□□□□□ -1.54
VPS13A-209ENST00000467124 TMEM62Q0P6H9 643 aa5.4□□□□□ -1.54
VPS13A-209ENST00000467124 FAPQ12884 760 aa5.4□□□□□ -1.54
VPS13A-209ENST00000467124 ZNF792Q3KQV3 632 aa5.4□□□□□ -1.54
VPS13A-209ENST00000467124 RGL3Q3MIN7 710 aa5.4□□□□□ -1.54
VPS13A-209ENST00000467124 TOR2AQ5JU69 321 aa5.4□□□□□ -1.54
VPS13A-209ENST00000467124 CATSPEREQ5SY80 951 aa5.4□□□□□ -1.54
VPS13A-209ENST00000467124 PPP4R4Q6NUP7 873 aa5.4□□□□□ -1.54
VPS13A-209ENST00000467124 KCTD1Q719H9 257 aa5.4□□□□□ -1.54
VPS13A-209ENST00000467124 CLEC4DQ8WXI8 215 aa5.4□□□□□ -1.54
VPS13A-209ENST00000467124 MYLIPQ8WY64 445 aa5.4□□□□□ -1.54
VPS13A-209ENST00000467124 DLG3Q92796 817 aa5.4□□□□□ -1.54
VPS13A-209ENST00000467124 ZNF496Q96IT1 587 aaPredicted RBP5.4□□□□□ -1.54
VPS13A-209ENST00000467124 TNFRSF12AQ9NP84 129 aa5.4□□□□□ -1.54
VPS13A-209ENST00000467124 KCNH7Q9NS40 1196 aa5.4□□□□□ -1.54
VPS13A-209ENST00000467124 CCM2LQ9NUG4 571 aaPredicted RBP5.4□□□□□ -1.54
VPS13A-209ENST00000467124 ADAMTS6Q9UKP5 1117 aa5.4□□□□□ -1.54
VPS13A-209ENST00000467124 PALD1Q9ULE6 856 aa5.4□□□□□ -1.54
VPS13A-209ENST00000467124 PCDHB4Q9Y5E5 795 aa5.4□□□□□ -1.54
VPS13A-209ENST00000467124 B3GALT1Q9Y5Z6 326 aa5.4□□□□□ -1.54
VPS13A-209ENST00000467124 HCFC2Q9Y5Z7 792 aa5.4□□□□□ -1.54
VPS13A-209ENST00000467124 E2F8A0AVK6 867 aa5.39□□□□□ -1.55
VPS13A-209ENST00000467124 K7ESF4 209 aa5.39□□□□□ -1.55
VPS13A-209ENST00000467124 HGSO14964 777 aaPredicted RBP5.39□□□□□ -1.55
VPS13A-209ENST00000467124 FOXP2O15409 715 aa5.39□□□□□ -1.55
VPS13A-209ENST00000467124 SGSM2O43147 1006 aa5.39□□□□□ -1.55
VPS13A-209ENST00000467124 CLASP2O75122 1294 aaKnown RBP5.39□□□□□ -1.55
VPS13A-209ENST00000467124 IL33O95760 270 aa5.39□□□□□ -1.55
VPS13A-209ENST00000467124 C4BPAP04003 597 aaKnown RBP5.39□□□□□ -1.55
VPS13A-209ENST00000467124 CYBBP04839 570 aa5.39□□□□□ -1.55
VPS13A-209ENST00000467124 RNASE1P07998 156 aaKnown RBP5.39□□□□□ -1.55
VPS13A-209ENST00000467124 RBP3P10745 1247 aa5.39□□□□□ -1.55
VPS13A-209ENST00000467124 ERVFRD-1P60508 538 aa5.39□□□□□ -1.55
VPS13A-209ENST00000467124 NR1I3Q14994 352 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms