RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 SLC5A5Q92911 643 aa22.58■■□□□ 1.21
COL9A3-202ENST00000452372 RIT2Q99578 217 aa22.58■■□□□ 1.21
COL9A3-202ENST00000452372 NAP1L4Q99733 375 aaKnown RBP22.58■■□□□ 1.21
COL9A3-202ENST00000452372 PBX4Q9BYU1 374 aa22.58■■□□□ 1.21
COL9A3-202ENST00000452372 DDX25Q9UHL0 483 aaKnown RBP22.58■■□□□ 1.21
COL9A3-202ENST00000452372 GTF2IRD1Q9UHL9 959 aa22.58■■□□□ 1.21
COL9A3-202ENST00000452372 ZNF215Q9UL58 517 aaPredicted RBP22.58■■□□□ 1.21
COL9A3-202ENST00000452372 CHD7Q9P2D1 2997 aa22.57■■□□□ 1.2
COL9A3-202ENST00000452372 DDX39AO00148 427 aaKnown RBP22.57■■□□□ 1.2
COL9A3-202ENST00000452372 LGR5O75473 907 aa22.57■■□□□ 1.2
COL9A3-202ENST00000452372 CCNE2O96020 404 aa22.57■■□□□ 1.2
COL9A3-202ENST00000452372 FGBP02675 491 aa22.57■■□□□ 1.2
COL9A3-202ENST00000452372 GJB2P29033 226 aa22.57■■□□□ 1.2
COL9A3-202ENST00000452372 ZNF746Q6NUN9 644 aaPredicted RBP22.57■■□□□ 1.2
COL9A3-202ENST00000452372 TRIM50Q86XT4 487 aa22.57■■□□□ 1.2
COL9A3-202ENST00000452372 PHF6Q8IWS0 365 aaKnown RBP eCLIP22.57■■□□□ 1.2
COL9A3-202ENST00000452372 MAFAQ8NHW3 353 aaPredicted RBP22.57■■□□□ 1.2
COL9A3-202ENST00000452372 TIFAQ96CG3 184 aa22.57■■□□□ 1.2
COL9A3-202ENST00000452372 FOXP1Q9H334 677 aaPredicted RBP22.57■■□□□ 1.2
COL9A3-202ENST00000452372 SMARCAD1Q9H4L7 1026 aa22.57■■□□□ 1.2
COL9A3-202ENST00000452372 ZNF576Q9H609 170 aa22.57■■□□□ 1.2
COL9A3-202ENST00000452372 SMC3Q9UQE7 1217 aa22.57■■□□□ 1.2
COL9A3-202ENST00000452372 SCN5AQ14524 2016 aa22.57■■□□□ 1.2
COL9A3-202ENST00000452372 EMSYQ7Z589 1322 aa22.57■■□□□ 1.2
COL9A3-202ENST00000452372 CCNT1O60563 726 aaKnown RBP22.56■■□□□ 1.2
COL9A3-202ENST00000452372 KRT76Q01546 638 aa22.56■■□□□ 1.2
COL9A3-202ENST00000452372 GDF6Q6KF10 455 aaPredicted RBP22.56■■□□□ 1.2
COL9A3-202ENST00000452372 ABHD15Q6UXT9 468 aa22.56■■□□□ 1.2
COL9A3-202ENST00000452372 SCLYQ96I15 445 aa22.56■■□□□ 1.2
COL9A3-202ENST00000452372 PCYT2Q99447 389 aa22.56■■□□□ 1.2
COL9A3-202ENST00000452372 ERAP1Q9NZ08 941 aa22.56■■□□□ 1.2
COL9A3-202ENST00000452372 TRIP12Q14669 1992 aaPredicted RBP22.56■■□□□ 1.2
COL9A3-202ENST00000452372 GBF1Q92538 1859 aa22.56■■□□□ 1.2
COL9A3-202ENST00000452372 IGKV6D-21A0A0A0MT36 114 aa22.55■■□□□ 1.2
COL9A3-202ENST00000452372 SLC37A4O43826 429 aa22.55■■□□□ 1.2
COL9A3-202ENST00000452372 PTGISQ16647 500 aa22.55■■□□□ 1.2
COL9A3-202ENST00000452372 OTOP2Q7RTS6 562 aa22.55■■□□□ 1.2
COL9A3-202ENST00000452372 ETNPPLQ8TBG4 499 aa22.55■■□□□ 1.2
COL9A3-202ENST00000452372 GLG1Q92896 1179 aa22.55■■□□□ 1.2
COL9A3-202ENST00000452372 SNX21Q969T3 373 aa22.55■■□□□ 1.2
COL9A3-202ENST00000452372 AZI2Q9H6S1 392 aa22.55■■□□□ 1.2
COL9A3-202ENST00000452372 TET1Q8NFU7 2136 aa22.55■■□□□ 1.2
COL9A3-202ENST00000452372 KAT6AQ92794 2004 aa22.55■■□□□ 1.2
COL9A3-202ENST00000452372 GAS7O60861 476 aa22.54■■□□□ 1.2
COL9A3-202ENST00000452372 PSMD10O75832 226 aa22.54■■□□□ 1.2
COL9A3-202ENST00000452372 SMIM10L2AP0DMW4 78 aa22.54■■□□□ 1.2
COL9A3-202ENST00000452372 SMIM10L2BP0DMW5 78 aa22.54■■□□□ 1.2
COL9A3-202ENST00000452372 LRCH2Q5VUJ6 765 aa22.54■■□□□ 1.2
COL9A3-202ENST00000452372 PLPPR4Q7Z2D5 763 aa22.54■■□□□ 1.2
COL9A3-202ENST00000452372 SMAP1Q8IYB5 467 aaPredicted RBP22.54■■□□□ 1.2
COL9A3-202ENST00000452372 RNPEPQ9H4A4 650 aa22.54■■□□□ 1.2
COL9A3-202ENST00000452372 KCNMB3Q9NPA1 279 aa22.54■■□□□ 1.2
COL9A3-202ENST00000452372 TCEAL9Q9UHQ7 104 aa22.54■■□□□ 1.2
COL9A3-202ENST00000452372 NOD1Q9Y239 953 aa22.54■■□□□ 1.2
COL9A3-202ENST00000452372 K7ELQ4 463 aaPredicted RBP22.53■■□□□ 1.2
COL9A3-202ENST00000452372 FOSL2P15408 326 aa22.53■■□□□ 1.2
COL9A3-202ENST00000452372 HOXC8P31273 242 aa22.53■■□□□ 1.2
COL9A3-202ENST00000452372 STAT5BP51692 787 aa22.53■■□□□ 1.2
COL9A3-202ENST00000452372 HIC1Q14526 733 aa22.53■■□□□ 1.2
COL9A3-202ENST00000452372 MIS18BP1Q6P0N0 1132 aa22.53■■□□□ 1.2
COL9A3-202ENST00000452372 GJA10Q969M2 543 aa22.53■■□□□ 1.2
COL9A3-202ENST00000452372 FAM20AQ96MK3 541 aa22.53■■□□□ 1.2
COL9A3-202ENST00000452372 CTAGE1Q96RT6 745 aa22.53■■□□□ 1.2
COL9A3-202ENST00000452372 TEKT3Q9BXF9 490 aa22.53■■□□□ 1.2
COL9A3-202ENST00000452372 COL25A1Q9BXS0 654 aaPredicted RBP22.53■■□□□ 1.2
COL9A3-202ENST00000452372 PCDHA10Q9Y5I2 948 aa22.53■■□□□ 1.2
COL9A3-202ENST00000452372 C17orf102A2RUQ5 167 aa22.52■■□□□ 1.2
COL9A3-202ENST00000452372 TBX3O15119 743 aa22.52■■□□□ 1.2
COL9A3-202ENST00000452372 U2AF2P26368 475 aaKnown RBP eCLIP22.52■■□□□ 1.24e-6■■■■□ 23.7
COL9A3-202ENST00000452372 SLC26A2P50443 739 aa22.52■■□□□ 1.2
COL9A3-202ENST00000452372 GNL2Q13823 731 aaKnown RBP22.52■■□□□ 1.2
COL9A3-202ENST00000452372 NOSTRINQ8IVI9 506 aa22.52■■□□□ 1.2
COL9A3-202ENST00000452372 RPUSD2Q8IZ73 545 aaKnown RBP22.52■■□□□ 1.2
COL9A3-202ENST00000452372 AFAP1L1Q8TED9 768 aa22.52■■□□□ 1.2
COL9A3-202ENST00000452372 TTC28Q96AY4 2481 aa22.52■■□□□ 1.2
COL9A3-202ENST00000452372 SPTBN5Q9NRC6 3674 aaKnown RBP22.52■■□□□ 1.2
COL9A3-202ENST00000452372 MYH9P35579 1960 aaKnown RBP22.51■■□□□ 1.19
COL9A3-202ENST00000452372 WDR64B1ANS9 1081 aa22.51■■□□□ 1.19
COL9A3-202ENST00000452372 BACH1O14867 736 aa22.51■■□□□ 1.19
COL9A3-202ENST00000452372 GNAT1P11488 350 aa22.51■■□□□ 1.19
COL9A3-202ENST00000452372 ZNF200P98182 395 aaPredicted RBP22.51■■□□□ 1.19
COL9A3-202ENST00000452372 FAM160B1Q5W0V3 765 aa22.51■■□□□ 1.19
COL9A3-202ENST00000452372 SWSAP1Q6NVH7 229 aa22.51■■□□□ 1.19
COL9A3-202ENST00000452372 B3GNT9Q6UX72 402 aa22.51■■□□□ 1.19
COL9A3-202ENST00000452372 CCDC60Q8IWA6 550 aaPredicted RBP22.51■■□□□ 1.19
COL9A3-202ENST00000452372 INTS4Q96HW7 963 aaKnown RBP22.51■■□□□ 1.19
COL9A3-202ENST00000452372 ZNF302Q9NR11 478 aa22.51■■□□□ 1.19
COL9A3-202ENST00000452372 SETD4Q9NVD3 440 aa22.51■■□□□ 1.19
COL9A3-202ENST00000452372 YBX2Q9Y2T7 364 aaKnown RBP22.51■■□□□ 1.19
COL9A3-202ENST00000452372 NRCAMQ92823 1304 aa22.51■■□□□ 1.19
COL9A3-202ENST00000452372 KIF28PB7ZC32 967 aa22.5■■□□□ 1.19
COL9A3-202ENST00000452372 PSAPP07602 524 aa22.5■■□□□ 1.19
COL9A3-202ENST00000452372 MARK3P27448 753 aa22.5■■□□□ 1.19
COL9A3-202ENST00000452372 SFNP31947 248 aa22.5■■□□□ 1.19
COL9A3-202ENST00000452372 LARP1BQ659C4 914 aaKnown RBP22.5■■□□□ 1.19
COL9A3-202ENST00000452372 POTEDQ86YR6 584 aa22.5■■□□□ 1.19
COL9A3-202ENST00000452372 USP38Q8NB14 1042 aa22.5■■□□□ 1.19
COL9A3-202ENST00000452372 HAS1Q92839 578 aa22.5■■□□□ 1.19
COL9A3-202ENST00000452372 TNPO1Q92973 898 aaKnown RBP22.5■■□□□ 1.19
COL9A3-202ENST00000452372 UNC45AQ9H3U1 944 aa22.5■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms