RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 PDIA5Q14554 519 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 CCL15Q16663 113 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 NBPF12Q5TAG4 269 aaPredicted RBP8.08□□□□□ -1.12
SYNE1-213ENST00000448038 CACTINQ8WUQ7 758 aaKnown RBP8.08□□□□□ -1.12
SYNE1-213ENST00000448038 MSTO1Q9BUK6 570 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 CARD6Q9BX69 1037 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 GCNT4Q9P109 453 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 SLC9A2Q9UBY0 812 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 PCDHB4Q9Y5E5 795 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 H2AFZP0C0S5 128 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 PRCPP42785 496 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 CBX1P83916 185 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 GOLGA8FQ08AF8 430 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 GOLGA8DPQ0D2H9 430 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 TCP11X2Q5H9J9 407 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 SLFN12LQ6IEE8 588 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 H2AFVQ71UI9 128 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 FAM83AQ86UY5 434 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 MB21D1Q8N884 522 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 NDST4Q9H3R1 872 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 TSKSQ9UJT2 592 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 UBE2Q2LH0YL09 131 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 BPIFB4P59827 614 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 SEC23AQ15436 765 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 SPDYE2Q495Y8 402 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 PARK7Q99497 189 aaKnown RBP8.08□□□□□ -1.12
SYNE1-213ENST00000448038 RGL1Q9NZL6 768 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 AMFRQ9UKV5 643 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 COMMD10Q9Y6G5 202 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 CCDC66A2RUB6 948 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 LRRN2O75325 713 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 TUBBP07437 444 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 NR3C2P08235 984 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 FERP16591 822 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 HOXD10P28358 340 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 C8orf74Q6P047 294 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 TRIM58Q8NG06 486 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 FAM163AQ96GL9 167 aaPredicted RBP8.08□□□□□ -1.12
SYNE1-213ENST00000448038 GPBP1L1Q9HC44 474 aaPredicted RBP8.08□□□□□ -1.12
SYNE1-213ENST00000448038 JPH1Q9HDC5 661 aaPredicted RBP8.08□□□□□ -1.12
SYNE1-213ENST00000448038 BZW2Q9Y6E2 419 aaKnown RBP8.08□□□□□ -1.12
SYNE1-213ENST00000448038 RIC1Q4ADV7 1423 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 TRIM49BA6NDI0 452 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 ZNF233A6NK53 670 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 WNT10BO00744 389 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 SLC16A4O15374 487 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 CETPP11597 493 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 MAP2K1Q02750 393 aaPredicted RBP8.08□□□□□ -1.12
SYNE1-213ENST00000448038 KRT31Q15323 416 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 APOBEC3HQ6NTF7 200 aaKnown RBP8.08□□□□□ -1.12
SYNE1-213ENST00000448038 C15orf52Q6ZUT6 534 aaKnown RBP8.08□□□□□ -1.12
SYNE1-213ENST00000448038 CATSPER4Q7RTX7 472 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 DAAM2Q86T65 1068 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 MTRQ99707 1265 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 CCSER1Q9C0I3 900 aa8.08□□□□□ -1.12
SYNE1-213ENST00000448038 FOXN1O15353 648 aa8.07□□□□□ -1.12
SYNE1-213ENST00000448038 BUB1O43683 1085 aa8.07□□□□□ -1.12
SYNE1-213ENST00000448038 TXNP10599 105 aaKnown RBP8.07□□□□□ -1.12
SYNE1-213ENST00000448038 GNAT1P11488 350 aa8.07□□□□□ -1.12
SYNE1-213ENST00000448038 INPP5BP32019 993 aa8.07□□□□□ -1.12
SYNE1-213ENST00000448038 KCNV1Q6PIU1 500 aa8.07□□□□□ -1.12
SYNE1-213ENST00000448038 PSPC1Q8WXF1 523 aaKnown RBP8.07□□□□□ -1.12
SYNE1-213ENST00000448038 HAUS4Q9H6D7 363 aa8.07□□□□□ -1.12
SYNE1-213ENST00000448038 RPF1Q9H9Y2 349 aaKnown RBP8.07□□□□□ -1.12
SYNE1-213ENST00000448038 LPXNO60711 386 aa8.07□□□□□ -1.12
SYNE1-213ENST00000448038 NFX1Q12986 1120 aaKnown RBP8.07□□□□□ -1.12
SYNE1-213ENST00000448038 MAPK6Q16659 721 aa8.07□□□□□ -1.12
SYNE1-213ENST00000448038 MFSD14CQ5VZR4 134 aa8.07□□□□□ -1.12
SYNE1-213ENST00000448038 ZNF365Q70YC5 407 aa8.07□□□□□ -1.12
SYNE1-213ENST00000448038 ERO1AQ96HE7 468 aa8.07□□□□□ -1.12
SYNE1-213ENST00000448038 DDX4Q9NQI0 724 aaKnown RBP8.07□□□□□ -1.12
SYNE1-213ENST00000448038 ESYT2A0FGR8 921 aa8.07□□□□□ -1.12
SYNE1-213ENST00000448038 FKBP1AP62942 108 aaKnown RBP8.07□□□□□ -1.12
SYNE1-213ENST00000448038 THNSL1Q8IYQ7 743 aa8.07□□□□□ -1.12
SYNE1-213ENST00000448038 AKT1S1Q96B36 256 aa8.07□□□□□ -1.12
SYNE1-213ENST00000448038 DDX52Q9Y2R4 599 aaKnown RBP eCLIP8.07□□□□□ -1.12
SYNE1-213ENST00000448038 PARP4Q9UKK3 1724 aaKnown RBP8.07□□□□□ -1.12
SYNE1-213ENST00000448038 A0A1W2PRG0 241 aa8.07□□□□□ -1.12
SYNE1-213ENST00000448038 NSFP46459 744 aaKnown RBP8.07□□□□□ -1.12
SYNE1-213ENST00000448038 SURF1Q15526 300 aa8.07□□□□□ -1.12
SYNE1-213ENST00000448038 CFAP221Q4G0U5 840 aa8.07□□□□□ -1.12
SYNE1-213ENST00000448038 OTUD6BQ8N6M0 293 aa8.07□□□□□ -1.12
SYNE1-213ENST00000448038 TSNARE1Q96NA8 513 aa8.07□□□□□ -1.12
SYNE1-213ENST00000448038 FHDC1Q9C0D6 1143 aaPredicted RBP8.07□□□□□ -1.12
SYNE1-213ENST00000448038 TUFT1Q9NNX1 390 aa8.07□□□□□ -1.12
SYNE1-213ENST00000448038 UBE2TQ9NPD8 197 aaPredicted RBP8.07□□□□□ -1.12
SYNE1-213ENST00000448038 NXF1Q9UBU9 619 aaKnown RBP8.07□□□□□ -1.12
SYNE1-213ENST00000448038 ZNF142P52746 1687 aaPredicted RBP8.07□□□□□ -1.12
SYNE1-213ENST00000448038 DENND3A2RUS2 1198 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 TBX3O15119 743 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 SLC25A27O95847 323 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 POLR2BP30876 1174 aaKnown RBP8.06□□□□□ -1.12
SYNE1-213ENST00000448038 SHMT1P34896 483 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 BACE1P56817 501 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 CRY2Q49AN0 593 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 CYFIP1Q7L576 1253 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 ANKRD13CQ8N6S4 541 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 CCDC94Q9BW85 323 aaPredicted RBP8.06□□□□□ -1.12
SYNE1-213ENST00000448038 SEL1LQ9UBV2 794 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 TMX2Q9Y320 296 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms