RNA–Protein interactions for RNA: ENST00000445265.6

TCOF1-206, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,825 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-206ENST00000445265 STAMBPO95630 424 aa18.07■□□□□ 0.48
TCOF1-206ENST00000445265 ATF2P15336 505 aa18.07■□□□□ 0.48
TCOF1-206ENST00000445265 ARHGAP4P98171 946 aa18.07■□□□□ 0.48
TCOF1-206ENST00000445265 SF3A3Q12874 501 aaKnown RBP eCLIP18.07■□□□□ 0.48
TCOF1-206ENST00000445265 ALCAMQ13740 583 aa18.07■□□□□ 0.48
TCOF1-206ENST00000445265 ZNF653Q96CK0 615 aa18.07■□□□□ 0.48
TCOF1-206ENST00000445265 TRIM10Q9UDY6 481 aa18.07■□□□□ 0.48
TCOF1-206ENST00000445265 USP17L10C9JJH3 530 aa18.06■□□□□ 0.48
TCOF1-206ENST00000445265 MAP2K2P36507 400 aa18.06■□□□□ 0.48
TCOF1-206ENST00000445265 NSFP46459 744 aaKnown RBP18.06■□□□□ 0.48
TCOF1-206ENST00000445265 DR1Q01658 176 aa18.06■□□□□ 0.48
TCOF1-206ENST00000445265 GADD45GIP1Q8TAE8 222 aaPredicted RBP18.06■□□□□ 0.48
TCOF1-206ENST00000445265 MRRFQ96E11 262 aaKnown RBP18.06■□□□□ 0.48
TCOF1-206ENST00000445265 NOVA2Q9UNW9 492 aaKnown RBP18.06■□□□□ 0.48
TCOF1-206ENST00000445265 CACNA1FO60840 1977 aa18.06■□□□□ 0.48
TCOF1-206ENST00000445265 DLATP10515 647 aaKnown RBP18.06■□□□□ 0.48
TCOF1-206ENST00000445265 LIG4P49917 911 aa18.06■□□□□ 0.48
TCOF1-206ENST00000445265 USP11P51784 963 aa18.06■□□□□ 0.48
TCOF1-206ENST00000445265 PTK2Q05397 1052 aa18.06■□□□□ 0.48
TCOF1-206ENST00000445265 SLMAPQ14BN4 828 aa18.06■□□□□ 0.48
TCOF1-206ENST00000445265 CCNI2Q6ZMN8 369 aaPredicted RBP18.06■□□□□ 0.48
TCOF1-206ENST00000445265 CNKSR1Q969H4 720 aa18.06■□□□□ 0.48
TCOF1-206ENST00000445265 ERGIC2Q96RQ1 377 aa18.06■□□□□ 0.48
TCOF1-206ENST00000445265 RIOK1Q9BRS2 568 aaKnown RBP18.06■□□□□ 0.48
TCOF1-206ENST00000445265 CTNND1O60716 968 aaKnown RBP18.06■□□□□ 0.48
TCOF1-206ENST00000445265 VPS41P49754 854 aa18.06■□□□□ 0.48
TCOF1-206ENST00000445265 NOA1Q8NC60 698 aaKnown RBP18.06■□□□□ 0.48
TCOF1-206ENST00000445265 DAGLBQ8NCG7 672 aa18.06■□□□□ 0.48
TCOF1-206ENST00000445265 TRIM11Q96F44 468 aa18.06■□□□□ 0.48
TCOF1-206ENST00000445265 FUT8Q9BYC5 575 aa18.06■□□□□ 0.48
TCOF1-206ENST00000445265 VPS37BQ9H9H4 285 aa18.06■□□□□ 0.48
TCOF1-206ENST00000445265 FGGP02679 453 aa18.06■□□□□ 0.48
TCOF1-206ENST00000445265 TRIM65Q6PJ69 517 aa18.06■□□□□ 0.48
TCOF1-206ENST00000445265 ADGRF4Q8IZF3 695 aa18.06■□□□□ 0.48
TCOF1-206ENST00000445265 DEPTORQ8TB45 409 aa18.06■□□□□ 0.48
TCOF1-206ENST00000445265 SMARCA1P28370 1054 aa18.05■□□□□ 0.48
TCOF1-206ENST00000445265 MXI1P50539 228 aa18.05■□□□□ 0.48
TCOF1-206ENST00000445265 UBXN2AP68543 259 aa18.05■□□□□ 0.48
TCOF1-206ENST00000445265 COL9A3Q14050 684 aaPredicted RBP18.05■□□□□ 0.48
TCOF1-206ENST00000445265 ARHGEF16Q5VV41 709 aa18.05■□□□□ 0.48
TCOF1-206ENST00000445265 TADA2BQ86TJ2 420 aa18.05■□□□□ 0.48
TCOF1-206ENST00000445265 UBE2TQ9NPD8 197 aaPredicted RBP18.05■□□□□ 0.48
TCOF1-206ENST00000445265 RAB20Q9NX57 234 aa18.05■□□□□ 0.48
TCOF1-206ENST00000445265 TMOD4Q9NZQ9 345 aa18.05■□□□□ 0.48
TCOF1-206ENST00000445265 SLC8A1P32418 973 aa18.05■□□□□ 0.48
TCOF1-206ENST00000445265 ERVK-24P63145 666 aa18.05■□□□□ 0.48
TCOF1-206ENST00000445265 GNPTABQ3T906 1256 aa18.05■□□□□ 0.48
TCOF1-206ENST00000445265 PPFIBP2Q8ND30 876 aa18.05■□□□□ 0.48
TCOF1-206ENST00000445265 POMGNT1Q8WZA1 660 aa18.05■□□□□ 0.48
TCOF1-206ENST00000445265 FAM81BQ96LP2 452 aa18.05■□□□□ 0.48
TCOF1-206ENST00000445265 SLTMQ9NWH9 1034 aaKnown RBP eCLIP18.05■□□□□ 0.48
TCOF1-206ENST00000445265 HGSO14964 777 aaPredicted RBP18.05■□□□□ 0.48
TCOF1-206ENST00000445265 CD19P15391 556 aa18.05■□□□□ 0.48
TCOF1-206ENST00000445265 ARHGEF1Q92888 912 aaKnown RBP18.05■□□□□ 0.48
TCOF1-206ENST00000445265 LRRC1Q9BTT6 524 aa18.05■□□□□ 0.48
TCOF1-206ENST00000445265 DBNDD1Q9H9R9 158 aa18.05■□□□□ 0.48
TCOF1-206ENST00000445265 EFCC1Q9HA90 598 aa18.05■□□□□ 0.48
TCOF1-206ENST00000445265 FAM217BQ9NTX9 383 aaPredicted RBP18.05■□□□□ 0.48
TCOF1-206ENST00000445265 TXNDC16Q9P2K2 825 aa18.05■□□□□ 0.48
TCOF1-206ENST00000445265 DNAJC12Q9UKB3 198 aa18.05■□□□□ 0.48
TCOF1-206ENST00000445265 HPS3Q969F9 1004 aa18.05■□□□□ 0.48
TCOF1-206ENST00000445265 HOOK2Q96ED9 719 aa18.05■□□□□ 0.48
TCOF1-206ENST00000445265 ACTR5Q9H9F9 607 aaPredicted RBP18.05■□□□□ 0.48
TCOF1-206ENST00000445265 MIF4GDA9UHW6 222 aaKnown RBP18.04■□□□□ 0.48
TCOF1-206ENST00000445265 ECEL1O95672 775 aa18.04■□□□□ 0.48
TCOF1-206ENST00000445265 TBX2Q13207 712 aaPredicted RBP18.04■□□□□ 0.48
TCOF1-206ENST00000445265 CCDC13Q8IYE1 715 aa18.04■□□□□ 0.48
TCOF1-206ENST00000445265 FAM169AQ9Y6X4 670 aa18.04■□□□□ 0.48
TCOF1-206ENST00000445265 ZNF185O15231 689 aa18.04■□□□□ 0.48
TCOF1-206ENST00000445265 KCNQ2O43526 872 aa18.04■□□□□ 0.48
TCOF1-206ENST00000445265 ADRA2BP18089 450 aa18.04■□□□□ 0.48
TCOF1-206ENST00000445265 RASSF2P50749 326 aa18.04■□□□□ 0.48
TCOF1-206ENST00000445265 DNAJC7Q99615 494 aa18.04■□□□□ 0.48
TCOF1-206ENST00000445265 DCCP43146 1447 aa18.04■□□□□ 0.48
TCOF1-206ENST00000445265 RASA1P20936 1047 aa18.04■□□□□ 0.48
TCOF1-206ENST00000445265 CTTNQ14247 550 aaKnown RBP18.04■□□□□ 0.48
TCOF1-206ENST00000445265 QRICH1Q2TAL8 776 aa18.04■□□□□ 0.48
TCOF1-206ENST00000445265 TAF1DQ9H5J8 278 aaPredicted RBP18.04■□□□□ 0.48
TCOF1-206ENST00000445265 PTPN22Q9Y2R2 807 aa18.04■□□□□ 0.48
TCOF1-206ENST00000445265 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.04■□□□□ 0.48
TCOF1-206ENST00000445265 MYMKA6NI61 221 aa18.04■□□□□ 0.48
TCOF1-206ENST00000445265 SUN1O94901 812 aa18.04■□□□□ 0.48
TCOF1-206ENST00000445265 HOXA13P31271 388 aaPredicted RBP18.04■□□□□ 0.48
TCOF1-206ENST00000445265 CLNS1AP54105 237 aaKnown RBP18.04■□□□□ 0.48
TCOF1-206ENST00000445265 TNFAIP1Q13829 316 aa18.04■□□□□ 0.48
TCOF1-206ENST00000445265 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP18.04■□□□□ 0.48
TCOF1-206ENST00000445265 MTMR4Q9NYA4 1195 aa18.04■□□□□ 0.48
TCOF1-206ENST00000445265 YWHAEP62258 255 aaKnown RBP18.03■□□□□ 0.48
TCOF1-206ENST00000445265 LMNB2Q03252 620 aa18.03■□□□□ 0.48
TCOF1-206ENST00000445265 SLC18A3Q16572 532 aa18.03■□□□□ 0.48
TCOF1-206ENST00000445265 FRMD5Q7Z6J6 570 aa18.03■□□□□ 0.48
TCOF1-206ENST00000445265 CCDC89Q8N998 374 aa18.03■□□□□ 0.48
TCOF1-206ENST00000445265 STMN2Q93045 179 aa18.03■□□□□ 0.48
TCOF1-206ENST00000445265 PCIF1Q9H4Z3 704 aa18.03■□□□□ 0.48
TCOF1-206ENST00000445265 ESYT2A0FGR8 921 aa18.03■□□□□ 0.48
TCOF1-206ENST00000445265 IFNB1P01574 187 aa18.03■□□□□ 0.48
TCOF1-206ENST00000445265 BEND6Q5SZJ8 279 aaPredicted RBP18.03■□□□□ 0.48
TCOF1-206ENST00000445265 ESYT3A0FGR9 886 aa18.03■□□□□ 0.48
TCOF1-206ENST00000445265 POTEFA5A3E0 1075 aa18.03■□□□□ 0.48
TCOF1-206ENST00000445265 SART1O43290 800 aaKnown RBP18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms