RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 TRMT1LQ7Z2T5 733 aaKnown RBP21.08■□□□□ 0.97
SHH-204ENST00000441114 POTEDQ86YR6 584 aa21.08■□□□□ 0.97
SHH-204ENST00000441114 CCDC60Q8IWA6 550 aaPredicted RBP21.08■□□□□ 0.97
SHH-204ENST00000441114 ETNPPLQ8TBG4 499 aa21.08■□□□□ 0.97
SHH-204ENST00000441114 CTAGE1Q96RT6 745 aa21.08■□□□□ 0.97
SHH-204ENST00000441114 WNT8AQ9H1J5 351 aa21.08■□□□□ 0.97
SHH-204ENST00000441114 FOXP1Q9H334 677 aaPredicted RBP21.08■□□□□ 0.97
SHH-204ENST00000441114 TRPC6Q9Y210 931 aa21.08■□□□□ 0.97
SHH-204ENST00000441114 PCDHA10Q9Y5I2 948 aa21.08■□□□□ 0.97
SHH-204ENST00000441114 KIF28PB7ZC32 967 aa21.07■□□□□ 0.96
SHH-204ENST00000441114 WNT7AO00755 349 aa21.07■□□□□ 0.96
SHH-204ENST00000441114 PSMD10O75832 226 aa21.07■□□□□ 0.96
SHH-204ENST00000441114 ACRP10323 421 aa21.07■□□□□ 0.96
SHH-204ENST00000441114 GNAT1P11488 350 aa21.07■□□□□ 0.96
SHH-204ENST00000441114 EPHB4P54760 987 aa21.07■□□□□ 0.96
SHH-204ENST00000441114 PPFIA1Q13136 1202 aa21.07■□□□□ 0.96
SHH-204ENST00000441114 CUL4AQ13619 759 aa21.07■□□□□ 0.96
SHH-204ENST00000441114 PLCB4Q15147 1175 aa21.07■□□□□ 0.96
SHH-204ENST00000441114 HABP4Q5JVS0 413 aaKnown RBP21.07■□□□□ 0.96
SHH-204ENST00000441114 MCTP1Q6DN14 999 aa21.07■□□□□ 0.96
SHH-204ENST00000441114 PDXDC2PQ6P474 469 aa21.07■□□□□ 0.96
SHH-204ENST00000441114 PLPPR4Q7Z2D5 763 aa21.07■□□□□ 0.96
SHH-204ENST00000441114 CKAP2LQ8IYA6 745 aa21.07■□□□□ 0.96
SHH-204ENST00000441114 SMAP1Q8IYB5 467 aaPredicted RBP21.07■□□□□ 0.96
SHH-204ENST00000441114 CCDC155Q8N6L0 562 aa21.07■□□□□ 0.96
SHH-204ENST00000441114 DHX38Q92620 1227 aaKnown RBP21.07■□□□□ 0.96
SHH-204ENST00000441114 DISC1Q9NRI5 854 aa21.07■□□□□ 0.96
SHH-204ENST00000441114 FOXD4L1Q9NU39 408 aa21.07■□□□□ 0.96
SHH-204ENST00000441114 GABBR1Q9UBS5 961 aa21.07■□□□□ 0.96
SHH-204ENST00000441114 IGKV6D-21A0A0A0MT36 114 aa21.06■□□□□ 0.96
SHH-204ENST00000441114 WDR64B1ANS9 1081 aa21.06■□□□□ 0.96
SHH-204ENST00000441114 H3BQV1 296 aa21.06■□□□□ 0.96
SHH-204ENST00000441114 PTK7Q13308 1070 aa21.06■□□□□ 0.96
SHH-204ENST00000441114 PPIGQ13427 754 aaKnown RBP eCLIP21.06■□□□□ 0.96
SHH-204ENST00000441114 GRIK4Q16099 956 aa21.06■□□□□ 0.96
SHH-204ENST00000441114 MIER3Q7Z3K6 550 aa21.06■□□□□ 0.96
SHH-204ENST00000441114 LMBR1Q8WVP7 490 aa21.06■□□□□ 0.96
SHH-204ENST00000441114 WNT8BQ93098 351 aa21.06■□□□□ 0.96
SHH-204ENST00000441114 NRCAMQ92823 1304 aa21.05■□□□□ 0.96
SHH-204ENST00000441114 POTEB3A0JP26 581 aa21.05■□□□□ 0.96
SHH-204ENST00000441114 K7ELQ4 463 aaPredicted RBP21.05■□□□□ 0.96
SHH-204ENST00000441114 BAG4O95429 457 aaKnown RBP21.05■□□□□ 0.96
SHH-204ENST00000441114 INSRRP14616 1297 aa21.05■□□□□ 0.96
SHH-204ENST00000441114 SHHQ15465 462 aa21.05■□□□□ 0.96
SHH-204ENST00000441114 C9orf50Q5SZB4 431 aa21.05■□□□□ 0.96
SHH-204ENST00000441114 LARP1BQ659C4 914 aaKnown RBP21.05■□□□□ 0.96
SHH-204ENST00000441114 POTEBQ6S5H4 581 aa21.05■□□□□ 0.96
SHH-204ENST00000441114 NOSTRINQ8IVI9 506 aa21.05■□□□□ 0.96
SHH-204ENST00000441114 TDHQ8IZJ6 230 aa21.05■□□□□ 0.96
SHH-204ENST00000441114 AFAP1L1Q8TED9 768 aa21.05■□□□□ 0.96
SHH-204ENST00000441114 HAS1Q92839 578 aa21.05■□□□□ 0.96
SHH-204ENST00000441114 FAM20AQ96MK3 541 aa21.05■□□□□ 0.96
SHH-204ENST00000441114 KCNMB3Q9NPA1 279 aa21.05■□□□□ 0.96
SHH-204ENST00000441114 TANC1Q9C0D5 1861 aa21.05■□□□□ 0.96
SHH-204ENST00000441114 CKBP12277 381 aa21.04■□□□□ 0.96
SHH-204ENST00000441114 HOXC8P31273 242 aa21.04■□□□□ 0.96
SHH-204ENST00000441114 SFNP31947 248 aa21.04■□□□□ 0.96
SHH-204ENST00000441114 MCM7P33993 719 aa21.04■□□□□ 0.96
SHH-204ENST00000441114 THPOP40225 353 aa21.04■□□□□ 0.96
SHH-204ENST00000441114 JAK3P52333 1124 aa21.04■□□□□ 0.96
SHH-204ENST00000441114 ZNF174Q15697 407 aa21.04■□□□□ 0.96
SHH-204ENST00000441114 CALCRLQ16602 461 aa21.04■□□□□ 0.96
SHH-204ENST00000441114 DEFB128Q7Z7B8 93 aa21.04■□□□□ 0.96
SHH-204ENST00000441114 SERINC5Q86VE9 423 aa21.04■□□□□ 0.96
SHH-204ENST00000441114 CAGE1Q8TC20 777 aa21.04■□□□□ 0.96
SHH-204ENST00000441114 TRAPPC12Q8WVT3 735 aa21.04■□□□□ 0.96
SHH-204ENST00000441114 ZBTB10Q96DT7 871 aa21.04■□□□□ 0.96
SHH-204ENST00000441114 PITPNM1O00562 1244 aa21.03■□□□□ 0.96
SHH-204ENST00000441114 TBX3O15119 743 aa21.03■□□□□ 0.96
SHH-204ENST00000441114 NEMFO60524 1076 aa21.03■□□□□ 0.96
SHH-204ENST00000441114 IQCF3P0C7M6 154 aa21.03■□□□□ 0.96
SHH-204ENST00000441114 ATP4AP20648 1035 aa21.03■□□□□ 0.96
SHH-204ENST00000441114 SLC26A2P50443 739 aa21.03■□□□□ 0.96
SHH-204ENST00000441114 TNPO1Q92973 898 aaKnown RBP21.03■□□□□ 0.96
SHH-204ENST00000441114 IL23AQ9NPF7 189 aa21.03■□□□□ 0.96
SHH-204ENST00000441114 NOL7Q9UMY1 257 aaKnown RBP21.03■□□□□ 0.96
SHH-204ENST00000441114 MAFBQ9Y5Q3 323 aaPredicted RBP21.03■□□□□ 0.96
SHH-204ENST00000441114 RRN3P2A6NIE6 340 aa21.02■□□□□ 0.96
SHH-204ENST00000441114 RBAK-RBAKDNI3L0D1 243 aa21.02■□□□□ 0.96
SHH-204ENST00000441114 SELPP16109 830 aa21.02■□□□□ 0.96
SHH-204ENST00000441114 U2AF2P26368 475 aaKnown RBP eCLIP21.02■□□□□ 0.96
SHH-204ENST00000441114 ADAM17P78536 824 aa21.02■□□□□ 0.96
SHH-204ENST00000441114 UGCGQ16739 394 aa21.02■□□□□ 0.96
SHH-204ENST00000441114 TRIM71Q2Q1W2 868 aaKnown RBP21.02■□□□□ 0.96
SHH-204ENST00000441114 TTC38Q5R3I4 469 aa21.02■□□□□ 0.96
SHH-204ENST00000441114 ZNF618Q5T7W0 954 aa21.02■□□□□ 0.96
SHH-204ENST00000441114 NCAPH2Q6IBW4 605 aa21.02■□□□□ 0.96
SHH-204ENST00000441114 RUFY4Q6ZNE9 571 aa21.02■□□□□ 0.96
SHH-204ENST00000441114 LRRC8DQ7L1W4 858 aa21.02■□□□□ 0.96
SHH-204ENST00000441114 C16orf59Q7L2K0 433 aa21.02■□□□□ 0.96
SHH-204ENST00000441114 HSCBQ8IWL3 235 aa21.02■□□□□ 0.96
SHH-204ENST00000441114 SLFN12Q8IYM2 578 aa21.02■□□□□ 0.96
SHH-204ENST00000441114 ATP8B4Q8TF62 1192 aa21.02■□□□□ 0.96
SHH-204ENST00000441114 BUD13Q9BRD0 619 aaKnown RBP eCLIP21.02■□□□□ 0.963e-6■■■■■ 30.2
SHH-204ENST00000441114 TUBE1Q9UJT0 475 aa21.02■□□□□ 0.96
SHH-204ENST00000441114 VAV3Q9UKW4 847 aa21.02■□□□□ 0.96
SHH-204ENST00000441114 A0A1W2PPC1 479 aa21.01■□□□□ 0.95
SHH-204ENST00000441114 EML1O00423 815 aa21.01■□□□□ 0.95
SHH-204ENST00000441114 HBP1O60381 514 aa21.01■□□□□ 0.95
SHH-204ENST00000441114 TXKP42681 527 aa21.01■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms