RNA–Protein interactions for RNA: ENST00000411525.1

LINC00539-201, long intergenic non-protein coding RNA 539, humanhuman

TSL 3

Gene LINC00539, Length 664 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-201ENST00000411525 WDR11Q9BZH6 1224 aa12.64□□□□□ -0.39
LINC00539-201ENST00000411525 CUEDC2Q9H467 287 aa12.64□□□□□ -0.39
LINC00539-201ENST00000411525 MAGEF1Q9HAY2 307 aa12.64□□□□□ -0.39
LINC00539-201ENST00000411525 AGO4Q9HCK5 861 aaKnown RBP12.64□□□□□ -0.39
LINC00539-201ENST00000411525 KCNH7Q9NS40 1196 aa12.64□□□□□ -0.39
LINC00539-201ENST00000411525 KIAA1468Q9P260 1216 aa12.64□□□□□ -0.39
LINC00539-201ENST00000411525 ADD3Q9UEY8 706 aaKnown RBP12.64□□□□□ -0.39
LINC00539-201ENST00000411525 ASTN1O14525 1302 aa12.63□□□□□ -0.39
LINC00539-201ENST00000411525 DNAJC25-GNG10A0A024R161 153 aa12.63□□□□□ -0.39
LINC00539-201ENST00000411525 SOWAHBA6NEL2 793 aa12.63□□□□□ -0.39
LINC00539-201ENST00000411525 COBLO75128 1261 aa12.63□□□□□ -0.39
LINC00539-201ENST00000411525 CCT6AP40227 531 aaKnown RBP12.63□□□□□ -0.39
LINC00539-201ENST00000411525 CNTN2Q02246 1040 aa12.63□□□□□ -0.39
LINC00539-201ENST00000411525 GRB10Q13322 594 aa12.63□□□□□ -0.39
LINC00539-201ENST00000411525 STX1AQ16623 288 aa12.63□□□□□ -0.39
LINC00539-201ENST00000411525 TMEM119Q4V9L6 283 aa12.63□□□□□ -0.39
LINC00539-201ENST00000411525 NAALADL2Q58DX5 795 aa12.63□□□□□ -0.39
LINC00539-201ENST00000411525 HYIQ5T013 277 aa12.63□□□□□ -0.39
LINC00539-201ENST00000411525 C1orf53Q5VUE5 145 aa12.63□□□□□ -0.39
LINC00539-201ENST00000411525 SH3RF1Q7Z6J0 888 aa12.63□□□□□ -0.39
LINC00539-201ENST00000411525 NLRX1Q86UT6 975 aa12.63□□□□□ -0.39
LINC00539-201ENST00000411525 GRAMD1CQ8IYS0 662 aa12.63□□□□□ -0.39
LINC00539-201ENST00000411525 ERCC4Q92889 916 aaPredicted RBP12.63□□□□□ -0.39
LINC00539-201ENST00000411525 PAGE5Q96GU1 130 aa12.63□□□□□ -0.39
LINC00539-201ENST00000411525 MAML3Q96JK9 1138 aa12.63□□□□□ -0.39
LINC00539-201ENST00000411525 INPP4AQ96PE3 977 aaPredicted RBP12.63□□□□□ -0.39
LINC00539-201ENST00000411525 PNMA5Q96PV4 448 aa12.63□□□□□ -0.39
LINC00539-201ENST00000411525 RIT2Q99578 217 aa12.63□□□□□ -0.39
LINC00539-201ENST00000411525 STK17AQ9UEE5 414 aa12.63□□□□□ -0.39
LINC00539-201ENST00000411525 ATP11BQ9Y2G3 1177 aa12.63□□□□□ -0.39
LINC00539-201ENST00000411525 DIS3Q9Y2L1 958 aaKnown RBP12.63□□□□□ -0.39
LINC00539-201ENST00000411525 UNC80Q8N2C7 3258 aa12.63□□□□□ -0.39
LINC00539-201ENST00000411525 B4DLN1 442 aa12.62□□□□□ -0.39
LINC00539-201ENST00000411525 MYCNP04198 464 aaPredicted RBP12.62□□□□□ -0.39
LINC00539-201ENST00000411525 EDNRBP24530 442 aa12.62□□□□□ -0.39
LINC00539-201ENST00000411525 AFMP43652 599 aa12.62□□□□□ -0.39
LINC00539-201ENST00000411525 STXBP2Q15833 593 aa12.62□□□□□ -0.39
LINC00539-201ENST00000411525 GNPTABQ3T906 1256 aa12.62□□□□□ -0.39
LINC00539-201ENST00000411525 LRRC15Q8TF66 581 aa12.62□□□□□ -0.39
LINC00539-201ENST00000411525 CDHR1Q96JP9 859 aa12.62□□□□□ -0.39
LINC00539-201ENST00000411525 PLIN2Q99541 437 aa12.62□□□□□ -0.39
LINC00539-201ENST00000411525 MPHOSPH6Q99547 160 aaKnown RBP12.62□□□□□ -0.39
LINC00539-201ENST00000411525 NT5C3AQ9H0P0 336 aa12.62□□□□□ -0.39
LINC00539-201ENST00000411525 PKD2L1Q9P0L9 805 aa12.62□□□□□ -0.39
LINC00539-201ENST00000411525 TUBE1Q9UJT0 475 aa12.62□□□□□ -0.39
LINC00539-201ENST00000411525 KIAA1217Q5T5P2 1943 aa12.62□□□□□ -0.39
LINC00539-201ENST00000411525 LOC102724159A0A0B4J2E5 919 aa12.61□□□□□ -0.39
LINC00539-201ENST00000411525 MAFGO15525 162 aa12.61□□□□□ -0.39
LINC00539-201ENST00000411525 CHMP2AO43633 222 aa12.61□□□□□ -0.39
LINC00539-201ENST00000411525 GTPBP6O43824 516 aaPredicted RBP12.61□□□□□ -0.39
LINC00539-201ENST00000411525 SMC2O95347 1197 aa12.61□□□□□ -0.39
LINC00539-201ENST00000411525 PGK2P07205 417 aa12.61□□□□□ -0.39
LINC00539-201ENST00000411525 RARBP10826 455 aa12.61□□□□□ -0.39
LINC00539-201ENST00000411525 PDE4DQ08499 809 aa12.61□□□□□ -0.39
LINC00539-201ENST00000411525 ITGB3BPQ13352 177 aaPredicted RBP12.61□□□□□ -0.39
LINC00539-201ENST00000411525 SNX17Q15036 470 aa12.61□□□□□ -0.39
LINC00539-201ENST00000411525 PWP2Q15269 919 aaKnown RBP12.61□□□□□ -0.39
LINC00539-201ENST00000411525 LRRC41Q15345 812 aa12.61□□□□□ -0.39
LINC00539-201ENST00000411525 ZNF697Q5TEC3 545 aa12.61□□□□□ -0.39
LINC00539-201ENST00000411525 B3GNT9Q6UX72 402 aa12.61□□□□□ -0.39
LINC00539-201ENST00000411525 RNF180Q86T96 592 aa12.61□□□□□ -0.39
LINC00539-201ENST00000411525 SMARCE1Q969G3 411 aa12.61□□□□□ -0.39
LINC00539-201ENST00000411525 FGD4Q96M96 766 aa12.61□□□□□ -0.39
LINC00539-201ENST00000411525 UNC45AQ9H3U1 944 aa12.61□□□□□ -0.39
LINC00539-201ENST00000411525 TBC1D22BQ9NU19 505 aa12.61□□□□□ -0.39
LINC00539-201ENST00000411525 ANO10Q9NW15 660 aa12.61□□□□□ -0.39
LINC00539-201ENST00000411525 TCEAL9Q9UHQ7 104 aa12.61□□□□□ -0.39
LINC00539-201ENST00000411525 PCDHA5Q9Y5H7 936 aa12.61□□□□□ -0.39
LINC00539-201ENST00000411525 POTEB3A0JP26 581 aa12.6□□□□□ -0.39
LINC00539-201ENST00000411525 DDX39AO00148 427 aaKnown RBP12.6□□□□□ -0.39
LINC00539-201ENST00000411525 EML1O00423 815 aa12.6□□□□□ -0.39
LINC00539-201ENST00000411525 DHX15O43143 795 aaKnown RBP12.6□□□□□ -0.39
LINC00539-201ENST00000411525 MED24O75448 989 aa12.6□□□□□ -0.39
LINC00539-201ENST00000411525 EIF3JO75822 258 aaKnown RBP12.6□□□□□ -0.39
LINC00539-201ENST00000411525 MYL1P05976 194 aa12.6□□□□□ -0.39
LINC00539-201ENST00000411525 RPA1P27694 616 aa12.6□□□□□ -0.39
LINC00539-201ENST00000411525 ADCYAP1R1P41586 468 aa12.6□□□□□ -0.39
LINC00539-201ENST00000411525 NLRP12P59046 1061 aa12.6□□□□□ -0.39
LINC00539-201ENST00000411525 DPYDQ12882 1025 aa12.6□□□□□ -0.39
LINC00539-201ENST00000411525 SEMA3FQ13275 785 aa12.6□□□□□ -0.39
LINC00539-201ENST00000411525 ECM1Q16610 540 aa12.6□□□□□ -0.39
LINC00539-201ENST00000411525 ANO6Q4KMQ2 910 aa12.6□□□□□ -0.39
LINC00539-201ENST00000411525 PRAMEF19Q5SWL8 479 aa12.6□□□□□ -0.39
LINC00539-201ENST00000411525 NT5DC1Q5TFE4 455 aa12.6□□□□□ -0.39
LINC00539-201ENST00000411525 POTEBQ6S5H4 581 aa12.6□□□□□ -0.39
LINC00539-201ENST00000411525 MSL3Q8N5Y2 521 aaKnown RBP12.6□□□□□ -0.39
LINC00539-201ENST00000411525 NEK9Q8TD19 979 aa12.6□□□□□ -0.39
LINC00539-201ENST00000411525 LARP4BQ92615 738 aaKnown RBP12.6□□□□□ -0.39
LINC00539-201ENST00000411525 RAD54LQ92698 747 aa12.6□□□□□ -0.39
LINC00539-201ENST00000411525 STAMQ92783 540 aa12.6□□□□□ -0.39
LINC00539-201ENST00000411525 MTRQ99707 1265 aa12.6□□□□□ -0.39
LINC00539-201ENST00000411525 EIF2AK1Q9BQI3 630 aaKnown RBP12.6□□□□□ -0.39
LINC00539-201ENST00000411525 TINF2Q9BSI4 451 aa12.6□□□□□ -0.39
LINC00539-201ENST00000411525 POLR3CQ9BUI4 534 aaPredicted RBP12.6□□□□□ -0.39
LINC00539-201ENST00000411525 RBSNQ9H1K0 784 aa12.6□□□□□ -0.39
LINC00539-201ENST00000411525 PRDM5Q9NQX1 630 aaPredicted RBP12.6□□□□□ -0.39
LINC00539-201ENST00000411525 BLOC1S4Q9NUP1 217 aa12.6□□□□□ -0.39
LINC00539-201ENST00000411525 KBTBD4Q9NVX7 518 aa12.6□□□□□ -0.39
LINC00539-201ENST00000411525 MAN1B1Q9UKM7 699 aa12.6□□□□□ -0.39
LINC00539-201ENST00000411525 NFASCO94856 1347 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms