RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 ERVK13-1Q9NX77 482 aa8.19□□□□□ -1.1
USP40-202ENST00000409945 TFCP2L1Q9NZI6 479 aa8.19□□□□□ -1.1
USP40-202ENST00000409945 PLAAQ9Y263 795 aa8.19□□□□□ -1.1
USP40-202ENST00000409945 PCDHA8Q9Y5H6 950 aa8.19□□□□□ -1.1
USP40-202ENST00000409945 KDRP35968 1356 aa8.19□□□□□ -1.1
USP40-202ENST00000409945 PALLDQ8WX93 1383 aa8.19□□□□□ -1.1
USP40-202ENST00000409945 GSG1L2A8MUP6 293 aa8.19□□□□□ -1.1
USP40-202ENST00000409945 FGF10O15520 208 aaPredicted RBP8.19□□□□□ -1.1
USP40-202ENST00000409945 VIL1P09327 827 aaKnown RBP8.19□□□□□ -1.1
USP40-202ENST00000409945 PPP2R1AP30153 589 aa8.19□□□□□ -1.1
USP40-202ENST00000409945 SKOR2Q2VWA4 1001 aaPredicted RBP8.19□□□□□ -1.1
USP40-202ENST00000409945 RNF187Q5TA31 235 aaPredicted RBP8.19□□□□□ -1.1
USP40-202ENST00000409945 STYK1Q6J9G0 422 aa8.19□□□□□ -1.1
USP40-202ENST00000409945 LRRTM3Q86VH5 581 aa8.19□□□□□ -1.1
USP40-202ENST00000409945 SYNPOQ8N3V7 929 aa8.19□□□□□ -1.1
USP40-202ENST00000409945 RCBTB1Q8NDN9 531 aa8.19□□□□□ -1.1
USP40-202ENST00000409945 FLAD1Q8NFF5 587 aa8.19□□□□□ -1.1
USP40-202ENST00000409945 PHF20Q9BVI0 1012 aa8.19□□□□□ -1.1
USP40-202ENST00000409945 MRPL4Q9BYD3 311 aaKnown RBP8.19□□□□□ -1.1
USP40-202ENST00000409945 SLKQ9H2G2 1235 aaPredicted RBP8.19□□□□□ -1.1
USP40-202ENST00000409945 SEMA6BQ9H3T3 888 aa8.19□□□□□ -1.1
USP40-202ENST00000409945 PPARGC1AQ9UBK2 798 aaKnown RBP8.19□□□□□ -1.1
USP40-202ENST00000409945 ZNF281Q9Y2X9 895 aa8.19□□□□□ -1.1
USP40-202ENST00000409945 RFPL3O75679 317 aa8.18□□□□□ -1.1
USP40-202ENST00000409945 CLSTN1O94985 981 aa8.18□□□□□ -1.1
USP40-202ENST00000409945 SEPHS1P49903 392 aa8.18□□□□□ -1.1
USP40-202ENST00000409945 DDX10Q13206 875 aaKnown RBP8.18□□□□□ -1.1
USP40-202ENST00000409945 FNDC3BQ53EP0 1204 aaKnown RBP8.18□□□□□ -1.1
USP40-202ENST00000409945 CNNM4Q6P4Q7 775 aa8.18□□□□□ -1.1
USP40-202ENST00000409945 THAP5Q7Z6K1 395 aa8.18□□□□□ -1.1
USP40-202ENST00000409945 STRA8Q7Z7C7 330 aa8.18□□□□□ -1.1
USP40-202ENST00000409945 PTPRN2Q92932 1015 aa8.18□□□□□ -1.1
USP40-202ENST00000409945 IPO9Q96P70 1041 aaKnown RBP8.18□□□□□ -1.1
USP40-202ENST00000409945 FBLN5Q9UBX5 448 aa8.18□□□□□ -1.1
USP40-202ENST00000409945 NPFFR2Q9Y5X5 522 aa8.18□□□□□ -1.1
USP40-202ENST00000409945 GSC2O15499 205 aa8.17□□□□□ -1.1
USP40-202ENST00000409945 U2AF1L5P0DN76 240 aaPredicted RBP8.17□□□□□ -1.1
USP40-202ENST00000409945 RPL10P27635 214 aaKnown RBP8.17□□□□□ -1.1
USP40-202ENST00000409945 PCBP3P57721 371 aaKnown RBP8.17□□□□□ -1.1
USP40-202ENST00000409945 U2AF1Q01081 240 aaKnown RBP eCLIP8.17□□□□□ -1.1
USP40-202ENST00000409945 KIR3DS1Q14943 382 aa8.17□□□□□ -1.1
USP40-202ENST00000409945 RCSD1Q6JBY9 416 aa8.17□□□□□ -1.1
USP40-202ENST00000409945 G6PC3Q9BUM1 346 aa8.17□□□□□ -1.1
USP40-202ENST00000409945 LRP5O75197 1615 aa8.17□□□□□ -1.1
USP40-202ENST00000409945 TCRBV16S1A1N1A0A5B0 115 aa8.17□□□□□ -1.1
USP40-202ENST00000409945 STAT3P40763 770 aa8.17□□□□□ -1.1
USP40-202ENST00000409945 GABREP78334 506 aa8.17□□□□□ -1.1
USP40-202ENST00000409945 PCBP1Q15365 356 aaKnown RBP eCLIP8.17□□□□□ -1.1
USP40-202ENST00000409945 SEPT7Q16181 437 aaKnown RBP8.17□□□□□ -1.1
USP40-202ENST00000409945 RALGPS1Q5JS13 557 aa8.17□□□□□ -1.1
USP40-202ENST00000409945 PIGBQ92521 554 aa8.17□□□□□ -1.1
USP40-202ENST00000409945 DNAJC25-GNG10A0A024R161 153 aa8.16□□□□□ -1.1
USP40-202ENST00000409945 CCDC163A0A0D9SF12 145 aa8.16□□□□□ -1.1
USP40-202ENST00000409945 PPP1R11O60927 126 aaPredicted RBP8.16□□□□□ -1.1
USP40-202ENST00000409945 ADAMTS4O75173 837 aa8.16□□□□□ -1.1
USP40-202ENST00000409945 CPP00450 1065 aa8.16□□□□□ -1.1
USP40-202ENST00000409945 POLD1P28340 1107 aa8.16□□□□□ -1.1
USP40-202ENST00000409945 STAG1Q8WVM7 1258 aa8.16□□□□□ -1.1
USP40-202ENST00000409945 RTF1Q92541 710 aaKnown RBP8.16□□□□□ -1.1
USP40-202ENST00000409945 HRASLS5Q96KN8 279 aa8.16□□□□□ -1.1
USP40-202ENST00000409945 PTCHD1Q96NR3 888 aa8.16□□□□□ -1.1
USP40-202ENST00000409945 MTFR1LQ9H019 292 aa8.16□□□□□ -1.1
USP40-202ENST00000409945 LY75O60449 1722 aa8.16□□□□□ -1.1
USP40-202ENST00000409945 TMEM265A0A087WTH1 108 aa8.15□□□□□ -1.1
USP40-202ENST00000409945 CD8BP10966 210 aa8.15□□□□□ -1.1
USP40-202ENST00000409945 CDKN1CP49918 316 aaPredicted RBP8.15□□□□□ -1.1
USP40-202ENST00000409945 TEFQ10587 303 aa8.15□□□□□ -1.1
USP40-202ENST00000409945 LAPTM5Q13571 262 aa8.15□□□□□ -1.1
USP40-202ENST00000409945 CPSF6Q16630 551 aaKnown RBP eCLIP8.15□□□□□ -1.1
USP40-202ENST00000409945 BCL7CQ8WUZ0 217 aaPredicted RBP8.15□□□□□ -1.1
USP40-202ENST00000409945 DPF3Q92784 378 aa8.15□□□□□ -1.1
USP40-202ENST00000409945 CCDC140Q96MF4 163 aa8.15□□□□□ -1.1
USP40-202ENST00000409945 CDIP1Q9H305 208 aa8.15□□□□□ -1.1
USP40-202ENST00000409945 CARS2Q9HA77 564 aaKnown RBP8.15□□□□□ -1.1
USP40-202ENST00000409945 PRKAB1Q9Y478 270 aa8.15□□□□□ -1.1
USP40-202ENST00000409945 ITGB4P16144 1822 aa8.15□□□□□ -1.1
USP40-202ENST00000409945 EEF1DP3Q658K8 133 aa8.15□□□□□ -1.11
USP40-202ENST00000409945 TTC5Q8N0Z6 440 aa8.15□□□□□ -1.11
USP40-202ENST00000409945 MAPK8IP3Q9UPT6 1336 aa8.15□□□□□ -1.11
USP40-202ENST00000409945 NPHP3-ACAD11A0A0J9YXS1 232 aa8.14□□□□□ -1.11
USP40-202ENST00000409945 ZBTB7AO95365 584 aa8.14□□□□□ -1.11
USP40-202ENST00000409945 NCLP19338 710 aaKnown RBP8.14□□□□□ -1.11
USP40-202ENST00000409945 PRKAR2BP31323 418 aa8.14□□□□□ -1.11
USP40-202ENST00000409945 PKN3Q6P5Z2 889 aa8.14□□□□□ -1.11
USP40-202ENST00000409945 RNF111Q6ZNA4 994 aa8.14□□□□□ -1.11
USP40-202ENST00000409945 LHFPL2Q6ZUX7 228 aa8.14□□□□□ -1.11
USP40-202ENST00000409945 ADAMTS10Q9H324 1103 aa8.14□□□□□ -1.11
USP40-202ENST00000409945 COQ6Q9Y2Z9 468 aa8.14□□□□□ -1.11
USP40-202ENST00000409945 PCDHA2Q9Y5H9 948 aa8.14□□□□□ -1.11
USP40-202ENST00000409945 MYBBP1AQ9BQG0 1328 aaKnown RBP8.14□□□□□ -1.11
USP40-202ENST00000409945 COL3A1P02461 1466 aaPredicted RBP8.14□□□□□ -1.11
USP40-202ENST00000409945 MEFVO15553 781 aaPredicted RBP8.13□□□□□ -1.11
USP40-202ENST00000409945 KPNA6O60684 536 aa8.13□□□□□ -1.11
USP40-202ENST00000409945 JMJD7P0C870 316 aa8.13□□□□□ -1.11
USP40-202ENST00000409945 WDR43Q15061 677 aaKnown RBP eCLIP8.13□□□□□ -1.11
USP40-202ENST00000409945 MTHFSDQ2M296 383 aaKnown RBP8.13□□□□□ -1.11
USP40-202ENST00000409945 NLRP10Q86W26 655 aa8.13□□□□□ -1.11
USP40-202ENST00000409945 DCAF4Q8WV16 495 aa8.13□□□□□ -1.11
USP40-202ENST00000409945 HHIPL1Q96JK4 782 aa8.13□□□□□ -1.11
USP40-202ENST00000409945 ASAP1Q9ULH1 1129 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms