RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 ARIH2O95376 493 aa10.49□□□□□ -0.73
VPS53-203ENST00000401468 FOSP01100 380 aaPredicted RBP10.49□□□□□ -0.73
VPS53-203ENST00000401468 POLR2MP0CAP2 368 aa10.49□□□□□ -0.73
VPS53-203ENST00000401468 CSF2RAP15509 400 aa10.49□□□□□ -0.73
VPS53-203ENST00000401468 U2AF2P26368 475 aaKnown RBP eCLIP10.49□□□□□ -0.73
VPS53-203ENST00000401468 HOXA13P31271 388 aaPredicted RBP10.49□□□□□ -0.73
VPS53-203ENST00000401468 FPGSQ05932 587 aa10.49□□□□□ -0.73
VPS53-203ENST00000401468 AP3B2Q13367 1082 aa10.49□□□□□ -0.73
VPS53-203ENST00000401468 SEPT14Q6ZU15 432 aa10.49□□□□□ -0.73
VPS53-203ENST00000401468 MSL3Q8N5Y2 521 aaKnown RBP10.49□□□□□ -0.73
VPS53-203ENST00000401468 FAM184AQ8NB25 1140 aa10.49□□□□□ -0.73
VPS53-203ENST00000401468 DNERQ8NFT8 737 aa10.49□□□□□ -0.73
VPS53-203ENST00000401468 OR6J1Q8NGC5 347 aa10.49□□□□□ -0.73
VPS53-203ENST00000401468 SYTL5Q8TDW5 730 aaPredicted RBP10.49□□□□□ -0.73
VPS53-203ENST00000401468 FAM122AQ96E09 287 aa10.49□□□□□ -0.73
VPS53-203ENST00000401468 C8orf76Q96K31 380 aa10.49□□□□□ -0.73
VPS53-203ENST00000401468 TAAR1Q96RJ0 339 aa10.49□□□□□ -0.73
VPS53-203ENST00000401468 TSEN34Q9BSV6 310 aaKnown RBP10.49□□□□□ -0.73
VPS53-203ENST00000401468 WDR11Q9BZH6 1224 aa10.49□□□□□ -0.73
VPS53-203ENST00000401468 SPC25Q9HBM1 224 aa10.49□□□□□ -0.73
VPS53-203ENST00000401468 TRMT13Q9NUP7 481 aaKnown RBP10.49□□□□□ -0.73
VPS53-203ENST00000401468 MYH9P35579 1960 aaKnown RBP10.48□□□□□ -0.73
VPS53-203ENST00000401468 A0A0U1RQG5 324 aaPredicted RBP10.48□□□□□ -0.73
VPS53-203ENST00000401468 MOXD2PA6NHM9 499 aa10.48□□□□□ -0.73
VPS53-203ENST00000401468 ARVCFO00192 962 aa10.48□□□□□ -0.73
VPS53-203ENST00000401468 KIAA0355O15063 1070 aa10.48□□□□□ -0.73
VPS53-203ENST00000401468 B4GALT4O60513 344 aa10.48□□□□□ -0.73
VPS53-203ENST00000401468 CFBP00751 764 aa10.48□□□□□ -0.73
VPS53-203ENST00000401468 CYP2C9P11712 490 aa10.48□□□□□ -0.73
VPS53-203ENST00000401468 EIF2AK2P19525 551 aaKnown RBP10.48□□□□□ -0.73
VPS53-203ENST00000401468 SYT1P21579 422 aa10.48□□□□□ -0.73
VPS53-203ENST00000401468 SLC19A1P41440 591 aa10.48□□□□□ -0.73
VPS53-203ENST00000401468 PDE4DQ08499 809 aa10.48□□□□□ -0.73
VPS53-203ENST00000401468 ITGA7Q13683 1181 aa10.48□□□□□ -0.73
VPS53-203ENST00000401468 TRAF7Q6Q0C0 670 aa10.48□□□□□ -0.73
VPS53-203ENST00000401468 USP17L6PQ6QN14 398 aa10.48□□□□□ -0.73
VPS53-203ENST00000401468 C16orf59Q7L2K0 433 aa10.48□□□□□ -0.73
VPS53-203ENST00000401468 SCUBE3Q8IX30 993 aa10.48□□□□□ -0.73
VPS53-203ENST00000401468 FAM126BQ8IXS8 530 aa10.48□□□□□ -0.73
VPS53-203ENST00000401468 BLIDQ8IZY5 108 aa10.48□□□□□ -0.73
VPS53-203ENST00000401468 REXO1Q8N1G1 1221 aaKnown RBP10.48□□□□□ -0.73
VPS53-203ENST00000401468 PCSK9Q8NBP7 692 aaKnown RBP10.48□□□□□ -0.73
VPS53-203ENST00000401468 MYLIPQ8WY64 445 aa10.48□□□□□ -0.73
VPS53-203ENST00000401468 SCLYQ96I15 445 aa10.48□□□□□ -0.73
VPS53-203ENST00000401468 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.48□□□□□ -0.739e-7■■□□□ 12.3
VPS53-203ENST00000401468 TTYH1Q9H313 450 aaPredicted RBP10.48□□□□□ -0.73
VPS53-203ENST00000401468 FOXP1Q9H334 677 aaPredicted RBP10.48□□□□□ -0.73
VPS53-203ENST00000401468 TBX21Q9UL17 535 aa10.48□□□□□ -0.73
VPS53-203ENST00000401468 PCDHA6Q9UN73 950 aa10.48□□□□□ -0.73
VPS53-203ENST00000401468 KCNJ14Q9UNX9 436 aa10.48□□□□□ -0.73
VPS53-203ENST00000401468 PCDHA8Q9Y5H6 950 aa10.48□□□□□ -0.73
VPS53-203ENST00000401468 TRANK1O15050 2925 aa10.47□□□□□ -0.73
VPS53-203ENST00000401468 EDIL3O43854 480 aa10.47□□□□□ -0.73
VPS53-203ENST00000401468 CST5P28325 142 aaPredicted RBP10.47□□□□□ -0.73
VPS53-203ENST00000401468 KRT2P35908 639 aa10.47□□□□□ -0.73
VPS53-203ENST00000401468 SREBF1P36956 1147 aa10.47□□□□□ -0.73
VPS53-203ENST00000401468 CDK7P50613 346 aa10.47□□□□□ -0.73
VPS53-203ENST00000401468 NLRP5P59047 1200 aa10.47□□□□□ -0.73
VPS53-203ENST00000401468 UBE2SQ16763 222 aa10.47□□□□□ -0.73
VPS53-203ENST00000401468 LY6KQ17RY6 165 aa10.47□□□□□ -0.73
VPS53-203ENST00000401468 FAM47CQ5HY64 1035 aa10.47□□□□□ -0.73
VPS53-203ENST00000401468 LARP1BQ659C4 914 aaKnown RBP10.47□□□□□ -0.73
VPS53-203ENST00000401468 XRRA1Q6P2D8 792 aa10.47□□□□□ -0.73
VPS53-203ENST00000401468 ANKRD33Q7Z3H0 272 aa10.47□□□□□ -0.73
VPS53-203ENST00000401468 DIS3L2Q8IYB7 885 aaKnown RBP10.47□□□□□ -0.73
VPS53-203ENST00000401468 IL31RAQ8NI17 732 aa10.47□□□□□ -0.73
VPS53-203ENST00000401468 IWS1Q96ST2 819 aa10.47□□□□□ -0.73
VPS53-203ENST00000401468 VTA1Q9NP79 307 aa10.47□□□□□ -0.73
VPS53-203ENST00000401468 PXMP2Q9NR77 195 aa10.47□□□□□ -0.73
VPS53-203ENST00000401468 CXXC1Q9P0U4 656 aaPredicted RBP10.47□□□□□ -0.73
VPS53-203ENST00000401468 MTMR6Q9Y217 621 aa10.47□□□□□ -0.73
VPS53-203ENST00000401468 BTBD18B2RXH4 712 aa10.46□□□□□ -0.73
VPS53-203ENST00000401468 TULP1O00294 542 aaPredicted RBP10.46□□□□□ -0.73
VPS53-203ENST00000401468 STX6O43752 255 aa10.46□□□□□ -0.73
VPS53-203ENST00000401468 TIMP1P01033 207 aa10.46□□□□□ -0.73
VPS53-203ENST00000401468 CYP3A4P08684 503 aa10.46□□□□□ -0.73
VPS53-203ENST00000401468 TXNP10599 105 aaKnown RBP10.46□□□□□ -0.73
VPS53-203ENST00000401468 MYCLP12524 364 aaPredicted RBP10.46□□□□□ -0.73
VPS53-203ENST00000401468 CIITAP33076 1130 aa10.46□□□□□ -0.73
VPS53-203ENST00000401468 TRIM29Q14134 588 aa10.46□□□□□ -0.73
VPS53-203ENST00000401468 ZNF697Q5TEC3 545 aa10.46□□□□□ -0.73
VPS53-203ENST00000401468 C1orf53Q5VUE5 145 aa10.46□□□□□ -0.73
VPS53-203ENST00000401468 PCNX4Q63HM2 1172 aa10.46□□□□□ -0.73
VPS53-203ENST00000401468 IQSEC1Q6DN90 963 aa10.46□□□□□ -0.73
VPS53-203ENST00000401468 ZNF365Q70YC5 407 aa10.46□□□□□ -0.73
VPS53-203ENST00000401468 DEFB128Q7Z7B8 93 aa10.46□□□□□ -0.73
VPS53-203ENST00000401468 VSIG10LQ86VR7 867 aa10.46□□□□□ -0.73
VPS53-203ENST00000401468 NSUN6Q8TEA1 469 aaKnown RBP10.46□□□□□ -0.73
VPS53-203ENST00000401468 PHOX2BQ99453 314 aa10.46□□□□□ -0.73
VPS53-203ENST00000401468 CDX2Q99626 313 aaPredicted RBP10.46□□□□□ -0.73
VPS53-203ENST00000401468 PDCD2LQ9BRP1 358 aa10.46□□□□□ -0.73
VPS53-203ENST00000401468 ANO3Q9BYT9 981 aa10.46□□□□□ -0.73
VPS53-203ENST00000401468 SLC6A16Q9GZN6 736 aa10.46□□□□□ -0.73
VPS53-203ENST00000401468 WNT8AQ9H1J5 351 aa10.46□□□□□ -0.73
VPS53-203ENST00000401468 ADD3Q9UEY8 706 aaKnown RBP10.46□□□□□ -0.73
VPS53-203ENST00000401468 CACNA1AO00555 2505 aa10.45□□□□□ -0.74
VPS53-203ENST00000401468 ELP1O95163 1332 aa10.45□□□□□ -0.74
VPS53-203ENST00000401468 CYP3A7-CYP3A51PA0A087WV96 503 aa10.45□□□□□ -0.74
VPS53-203ENST00000401468 SPDYE3A6NKU9 549 aa10.45□□□□□ -0.74
VPS53-203ENST00000401468 KIF28PB7ZC32 967 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms