RNA–Protein interactions for RNA: ENST00000398729.1

VCX3A-202, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 808 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-202ENST00000398729 ZMYND12Q9H0C1 365 aa15.3■□□□□ 0.04
VCX3A-202ENST00000398729 C6orf50Q9HD87 102 aa15.3■□□□□ 0.04
VCX3A-202ENST00000398729 JPH1Q9HDC5 661 aaPredicted RBP15.3■□□□□ 0.04
VCX3A-202ENST00000398729 ERAP1Q9NZ08 941 aa15.3■□□□□ 0.04
VCX3A-202ENST00000398729 ABHD14A-ACY1A0A1B0GW23 586 aa15.29■□□□□ 0.04
VCX3A-202ENST00000398729 GPR37L1O60883 481 aa15.29■□□□□ 0.04
VCX3A-202ENST00000398729 EFCAB14O75071 495 aa15.29■□□□□ 0.04
VCX3A-202ENST00000398729 CAND2O75155 1236 aa15.29■□□□□ 0.04
VCX3A-202ENST00000398729 GNA11P29992 359 aa15.29■□□□□ 0.04
VCX3A-202ENST00000398729 PDIA3P30101 505 aaKnown RBP15.29■□□□□ 0.04
VCX3A-202ENST00000398729 ARHGAP4P98171 946 aa15.29■□□□□ 0.04
VCX3A-202ENST00000398729 IKBKEQ14164 716 aa15.29■□□□□ 0.04
VCX3A-202ENST00000398729 PKN1Q16512 942 aa15.29■□□□□ 0.04
VCX3A-202ENST00000398729 JAKMIP3Q5VZ66 844 aa15.29■□□□□ 0.04
VCX3A-202ENST00000398729 TMCO2Q7Z6W1 182 aaPredicted RBP15.29■□□□□ 0.04
VCX3A-202ENST00000398729 CYP2W1Q8TAV3 490 aa15.29■□□□□ 0.04
VCX3A-202ENST00000398729 TM6SF1Q9BZW5 370 aa15.29■□□□□ 0.04
VCX3A-202ENST00000398729 SMARCAD1Q9H4L7 1026 aa15.29■□□□□ 0.04
VCX3A-202ENST00000398729 SLC9A2Q9UBY0 812 aa15.29■□□□□ 0.04
VCX3A-202ENST00000398729 KAT6AQ92794 2004 aa15.29■□□□□ 0.04
VCX3A-202ENST00000398729 NFASCO94856 1347 aa15.28■□□□□ 0.04
VCX3A-202ENST00000398729 LCHNA4D1U4 455 aa15.28■□□□□ 0.04
VCX3A-202ENST00000398729 MEIS1O00470 390 aa15.28■□□□□ 0.04
VCX3A-202ENST00000398729 LGR5O75473 907 aa15.28■□□□□ 0.04
VCX3A-202ENST00000398729 ARP10275 920 aa15.28■□□□□ 0.04
VCX3A-202ENST00000398729 IFNAR1P17181 557 aa15.28■□□□□ 0.04
VCX3A-202ENST00000398729 MARK3P27448 753 aa15.28■□□□□ 0.04
VCX3A-202ENST00000398729 WDR5P61964 334 aaKnown RBP15.28■□□□□ 0.04
VCX3A-202ENST00000398729 CCT2P78371 535 aaKnown RBP15.28■□□□□ 0.04
VCX3A-202ENST00000398729 ADAM17P78536 824 aa15.28■□□□□ 0.04
VCX3A-202ENST00000398729 TOB2Q14106 344 aaPredicted RBP15.28■□□□□ 0.04
VCX3A-202ENST00000398729 MBTPS1Q14703 1052 aa15.28■□□□□ 0.04
VCX3A-202ENST00000398729 NTRK3Q16288 839 aa15.28■□□□□ 0.04
VCX3A-202ENST00000398729 TMEM31Q5JXX7 168 aa15.28■□□□□ 0.04
VCX3A-202ENST00000398729 NIPA1Q7RTP0 329 aa15.28■□□□□ 0.04
VCX3A-202ENST00000398729 REXO1Q8N1G1 1221 aaKnown RBP15.28■□□□□ 0.04
VCX3A-202ENST00000398729 LMBR1Q8WVP7 490 aa15.28■□□□□ 0.04
VCX3A-202ENST00000398729 SLC26A6Q9BXS9 759 aa15.28■□□□□ 0.04
VCX3A-202ENST00000398729 AZI2Q9H6S1 392 aa15.28■□□□□ 0.04
VCX3A-202ENST00000398729 NCOA5Q9HCD5 579 aaKnown RBP15.28■□□□□ 0.04
VCX3A-202ENST00000398729 AGO4Q9HCK5 861 aaKnown RBP15.28■□□□□ 0.04
VCX3A-202ENST00000398729 PPFIA1Q13136 1202 aa15.27■□□□□ 0.04
VCX3A-202ENST00000398729 TCTN1Q2MV58 587 aa15.27■□□□□ 0.04
VCX3A-202ENST00000398729 TRIM22Q8IYM9 498 aa15.27■□□□□ 0.04
VCX3A-202ENST00000398729 CCDC148Q8NFR7 591 aa15.27■□□□□ 0.04
VCX3A-202ENST00000398729 BICD2Q8TD16 824 aa15.27■□□□□ 0.04
VCX3A-202ENST00000398729 UPF3BQ9BZI7 483 aaKnown RBP15.27■□□□□ 0.04
VCX3A-202ENST00000398729 TRIOO75962 3097 aa15.26■□□□□ 0.03
VCX3A-202ENST00000398729 FAM86C2PA6NEL3 165 aa15.26■□□□□ 0.03
VCX3A-202ENST00000398729 PI4K2BG5E9Z4 385 aa15.26■□□□□ 0.03
VCX3A-202ENST00000398729 CPLX1O14810 134 aa15.26■□□□□ 0.03
VCX3A-202ENST00000398729 PPFIA3O75145 1194 aa15.26■□□□□ 0.03
VCX3A-202ENST00000398729 CENPBP07199 599 aaPredicted RBP15.26■□□□□ 0.03
VCX3A-202ENST00000398729 CYP3A4P08684 503 aa15.26■□□□□ 0.03
VCX3A-202ENST00000398729 CTSHP09668 335 aa15.26■□□□□ 0.03
VCX3A-202ENST00000398729 ACTR2P61160 394 aa15.26■□□□□ 0.03
VCX3A-202ENST00000398729 DEFB103AP81534 67 aa15.26■□□□□ 0.03
VCX3A-202ENST00000398729 GRIK4Q16099 956 aa15.26■□□□□ 0.03
VCX3A-202ENST00000398729 TAF2Q6P1X5 1199 aa15.26■□□□□ 0.03
VCX3A-202ENST00000398729 PLA2G4DQ86XP0 818 aa15.26■□□□□ 0.03
VCX3A-202ENST00000398729 DBF4BQ8NFT6 615 aa15.26■□□□□ 0.03
VCX3A-202ENST00000398729 TNPO1Q92973 898 aaKnown RBP15.26■□□□□ 0.03
VCX3A-202ENST00000398729 ZNF274Q96GC6 653 aaPredicted RBP15.26■□□□□ 0.03
VCX3A-202ENST00000398729 ZBED2Q9BTP6 218 aa15.26■□□□□ 0.03
VCX3A-202ENST00000398729 PTPRSQ13332 1948 aa15.25■□□□□ 0.03
VCX3A-202ENST00000398729 WDFY4Q6ZS81 3184 aa15.25■□□□□ 0.03
VCX3A-202ENST00000398729 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.25■□□□□ 0.03
VCX3A-202ENST00000398729 FAM86B1E9PN63 330 aa15.25■□□□□ 0.03
VCX3A-202ENST00000398729 FAM86B2P0C5J1 330 aa15.25■□□□□ 0.03
VCX3A-202ENST00000398729 SSRP1Q08945 709 aaKnown RBP15.25■□□□□ 0.03
VCX3A-202ENST00000398729 ITGB3BPQ13352 177 aaPredicted RBP15.25■□□□□ 0.03
VCX3A-202ENST00000398729 PLEKHG4Q58EX7 1191 aa15.25■□□□□ 0.03
VCX3A-202ENST00000398729 CPLX2Q6PUV4 134 aaKnown RBP15.25■□□□□ 0.03
VCX3A-202ENST00000398729 RSPH3Q86UC2 560 aa15.25■□□□□ 0.03
VCX3A-202ENST00000398729 CRYGNQ8WXF5 182 aa15.25■□□□□ 0.03
VCX3A-202ENST00000398729 SEPT8Q92599 483 aa15.25■□□□□ 0.03
VCX3A-202ENST00000398729 PCYT2Q99447 389 aa15.25■□□□□ 0.03
VCX3A-202ENST00000398729 SUGCTQ9HAC7 445 aa15.25■□□□□ 0.03
VCX3A-202ENST00000398729 SH3GLB2Q9NR46 395 aa15.25■□□□□ 0.03
VCX3A-202ENST00000398729 PDRG1Q9NUG6 133 aa15.25■□□□□ 0.03
VCX3A-202ENST00000398729 LMCD1Q9NZU5 365 aa15.25■□□□□ 0.03
VCX3A-202ENST00000398729 VPS54Q9P1Q0 977 aa15.25■□□□□ 0.03
VCX3A-202ENST00000398729 TUBE1Q9UJT0 475 aa15.25■□□□□ 0.03
VCX3A-202ENST00000398729 RRN3P2A6NIE6 340 aa15.24■□□□□ 0.03
VCX3A-202ENST00000398729 DDX39AO00148 427 aaKnown RBP15.24■□□□□ 0.03
VCX3A-202ENST00000398729 ADAMTS3O15072 1205 aa15.24■□□□□ 0.03
VCX3A-202ENST00000398729 STAT5BP51692 787 aa15.24■□□□□ 0.03
VCX3A-202ENST00000398729 SETQ01105 290 aaPredicted RBP15.24■□□□□ 0.03
VCX3A-202ENST00000398729 FAM26DQ5JW98 314 aa15.24■□□□□ 0.03
VCX3A-202ENST00000398729 PLPPR4Q7Z2D5 763 aa15.24■□□□□ 0.03
VCX3A-202ENST00000398729 RPAINQ86UA6 219 aa15.24■□□□□ 0.03
VCX3A-202ENST00000398729 GDPD5Q8WTR4 605 aa15.24■□□□□ 0.03
VCX3A-202ENST00000398729 LARP6Q9BRS8 491 aaKnown RBP15.24■□□□□ 0.03
VCX3A-202ENST00000398729 TRPC6Q9Y210 931 aa15.24■□□□□ 0.03
VCX3A-202ENST00000398729 HCN4Q9Y3Q4 1203 aa15.24■□□□□ 0.03
VCX3A-202ENST00000398729 MICAL3Q7RTP6 2002 aa15.23■□□□□ 0.03
VCX3A-202ENST00000398729 IGLV3-22A0A075B6J6 115 aa15.23■□□□□ 0.03
VCX3A-202ENST00000398729 MBLAC1A4D2B0 266 aaPredicted RBP15.23■□□□□ 0.03
VCX3A-202ENST00000398729 IPO5O00410 1097 aaKnown RBP15.23■□□□□ 0.03
VCX3A-202ENST00000398729 ATG7O95352 703 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms