RNA–Protein interactions for RNA: ENST00000393773.7

CHMP3-202, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-202ENST00000393773 GTF2F1P35269 517 aaKnown RBP eCLIP17.69■□□□□ 0.42
CHMP3-202ENST00000393773 TSHZ1Q6ZSZ6 1077 aa17.69■□□□□ 0.42
CHMP3-202ENST00000393773 ZNF654Q8IZM8 581 aa17.69■□□□□ 0.42
CHMP3-202ENST00000393773 CRIPAKQ8N1N5 446 aa17.69■□□□□ 0.42
CHMP3-202ENST00000393773 EXOC6Q8TAG9 804 aa17.69■□□□□ 0.42
CHMP3-202ENST00000393773 CUL5Q93034 780 aa17.69■□□□□ 0.42
CHMP3-202ENST00000393773 MYL10Q9BUA6 226 aa17.69■□□□□ 0.42
CHMP3-202ENST00000393773 LY9Q9HBG7 655 aa17.69■□□□□ 0.42
CHMP3-202ENST00000393773 ERAP1Q9NZ08 941 aa17.69■□□□□ 0.42
CHMP3-202ENST00000393773 CDY2AQ9Y6F7 541 aa17.69■□□□□ 0.42
CHMP3-202ENST00000393773 ENPP3O14638 875 aa17.68■□□□□ 0.42
CHMP3-202ENST00000393773 LINC01565O15544 149 aa17.68■□□□□ 0.42
CHMP3-202ENST00000393773 DGKIO75912 1065 aa17.68■□□□□ 0.42
CHMP3-202ENST00000393773 NHLH1Q02575 133 aa17.68■□□□□ 0.42
CHMP3-202ENST00000393773 SMAD4Q13485 552 aaKnown RBP17.68■□□□□ 0.42
CHMP3-202ENST00000393773 BTG3Q14201 252 aaPredicted RBP17.68■□□□□ 0.42
CHMP3-202ENST00000393773 HFE2Q6ZVN8 426 aa17.68■□□□□ 0.42
CHMP3-202ENST00000393773 DNAJB3Q8WWF6 145 aa17.68■□□□□ 0.42
CHMP3-202ENST00000393773 ZBTB10Q96DT7 871 aa17.68■□□□□ 0.42
CHMP3-202ENST00000393773 RRP36Q96EU6 259 aaKnown RBP17.68■□□□□ 0.42
CHMP3-202ENST00000393773 PLVAPQ9BX97 442 aa17.68■□□□□ 0.42
CHMP3-202ENST00000393773 KCNH6Q9H252 994 aa17.68■□□□□ 0.42
CHMP3-202ENST00000393773 AGO3Q9H9G7 860 aaKnown RBP17.68■□□□□ 0.42
CHMP3-202ENST00000393773 MRPL42Q9Y6G3 142 aaKnown RBP17.68■□□□□ 0.42
CHMP3-202ENST00000393773 EVPLQ92817 2033 aa17.67■□□□□ 0.42
CHMP3-202ENST00000393773 CSPG5O95196 566 aa17.67■□□□□ 0.42
CHMP3-202ENST00000393773 PLEKHA8P1O95397 391 aa17.67■□□□□ 0.42
CHMP3-202ENST00000393773 CHMLP26374 656 aa17.67■□□□□ 0.42
CHMP3-202ENST00000393773 MRPS6P82932 125 aaKnown RBP17.67■□□□□ 0.42
CHMP3-202ENST00000393773 HERC4Q5GLZ8 1057 aaPredicted RBP17.67■□□□□ 0.42
CHMP3-202ENST00000393773 RSPH3Q86UC2 560 aa17.67■□□□□ 0.42
CHMP3-202ENST00000393773 CTCFLQ8NI51 663 aaPredicted RBP17.67■□□□□ 0.42
CHMP3-202ENST00000393773 SEPT1Q8WYJ6 367 aa17.67■□□□□ 0.42
CHMP3-202ENST00000393773 P2RX5Q93086 422 aa17.67■□□□□ 0.42
CHMP3-202ENST00000393773 CDHR1Q96JP9 859 aa17.67■□□□□ 0.42
CHMP3-202ENST00000393773 FBXL18Q96ME1 805 aa17.67■□□□□ 0.42
CHMP3-202ENST00000393773 POP1Q99575 1024 aaKnown RBP17.67■□□□□ 0.42
CHMP3-202ENST00000393773 MUTYHQ9UIF7 546 aa17.67■□□□□ 0.42
CHMP3-202ENST00000393773 UBIAD1Q9Y5Z9 338 aa17.67■□□□□ 0.42
CHMP3-202ENST00000393773 DNAJB1P25685 340 aa17.66■□□□□ 0.42
CHMP3-202ENST00000393773 SMARCA1P28370 1054 aa17.66■□□□□ 0.42
CHMP3-202ENST00000393773 CD52P31358 61 aa17.66■□□□□ 0.42
CHMP3-202ENST00000393773 KIF5BP33176 963 aa17.66■□□□□ 0.42
CHMP3-202ENST00000393773 MRE11P49959 708 aa17.66■□□□□ 0.42
CHMP3-202ENST00000393773 MTMR1Q13613 665 aa17.66■□□□□ 0.42
CHMP3-202ENST00000393773 CMTR2Q8IYT2 770 aaKnown RBP17.66■□□□□ 0.42
CHMP3-202ENST00000393773 RUFY2Q8WXA3 655 aa17.66■□□□□ 0.42
CHMP3-202ENST00000393773 MSLNLQ96KJ4 702 aa17.66■□□□□ 0.42
CHMP3-202ENST00000393773 PCYT2Q99447 389 aa17.66■□□□□ 0.42
CHMP3-202ENST00000393773 ALG13Q9NP73 1137 aaKnown RBP17.66■□□□□ 0.42
CHMP3-202ENST00000393773 SEC63Q9UGP8 760 aaKnown RBP17.66■□□□□ 0.42
CHMP3-202ENST00000393773 CD207Q9UJ71 328 aa17.66■□□□□ 0.42
CHMP3-202ENST00000393773 PLAGL2Q9UPG8 496 aa17.66■□□□□ 0.42
CHMP3-202ENST00000393773 SGSM2O43147 1006 aa17.65■□□□□ 0.42
CHMP3-202ENST00000393773 ITGB1P05556 798 aa17.65■□□□□ 0.42
CHMP3-202ENST00000393773 ADAM15Q13444 863 aa17.65■□□□□ 0.42
CHMP3-202ENST00000393773 UBE2SQ16763 222 aa17.65■□□□□ 0.42
CHMP3-202ENST00000393773 ADGRD2Q7Z7M1 963 aa17.65■□□□□ 0.42
CHMP3-202ENST00000393773 SRBD1Q8N5C6 995 aaKnown RBP17.65■□□□□ 0.42
CHMP3-202ENST00000393773 GLG1Q92896 1179 aa17.65■□□□□ 0.42
CHMP3-202ENST00000393773 UPF3BQ9BZI7 483 aaKnown RBP17.65■□□□□ 0.42
CHMP3-202ENST00000393773 SMARCAD1Q9H4L7 1026 aa17.65■□□□□ 0.42
CHMP3-202ENST00000393773 PKD2L1Q9P0L9 805 aa17.65■□□□□ 0.42
CHMP3-202ENST00000393773 MYH9P35579 1960 aaKnown RBP17.65■□□□□ 0.42
CHMP3-202ENST00000393773 IGBP1P78318 339 aa17.64■□□□□ 0.41
CHMP3-202ENST00000393773 COL9A3Q14050 684 aaPredicted RBP17.64■□□□□ 0.41
CHMP3-202ENST00000393773 RTN4RL1Q86UN2 441 aaPredicted RBP17.64■□□□□ 0.41
CHMP3-202ENST00000393773 RNF135Q8IUD6 432 aa17.64■□□□□ 0.41
CHMP3-202ENST00000393773 NPAS4Q8IUM7 802 aa17.64■□□□□ 0.41
CHMP3-202ENST00000393773 CMTR1Q8N1G2 835 aaKnown RBP17.64■□□□□ 0.41
CHMP3-202ENST00000393773 LZTS2Q9BRK4 669 aa17.64■□□□□ 0.41
CHMP3-202ENST00000393773 FAM49AQ9H0Q0 323 aaPredicted RBP17.64■□□□□ 0.41
CHMP3-202ENST00000393773 IGFLR1Q9H665 355 aa17.64■□□□□ 0.41
CHMP3-202ENST00000393773 TRPV2Q9Y5S1 764 aa17.64■□□□□ 0.41
CHMP3-202ENST00000393773 SQORQ9Y6N5 450 aa17.64■□□□□ 0.41
CHMP3-202ENST00000393773 IGSF9BQ9UPX0 1349 aa17.64■□□□□ 0.41
CHMP3-202ENST00000393773 ZDBF2Q9HCK1 2354 aa17.64■□□□□ 0.41
CHMP3-202ENST00000393773 SH2B2O14492 632 aaPredicted RBP17.63■□□□□ 0.41
CHMP3-202ENST00000393773 EYA4O95677 639 aa17.63■□□□□ 0.41
CHMP3-202ENST00000393773 GLP2RO95838 553 aa17.63■□□□□ 0.41
CHMP3-202ENST00000393773 RPLP2P05387 115 aaKnown RBP17.63■□□□□ 0.41
CHMP3-202ENST00000393773 INSRRP14616 1297 aa17.63■□□□□ 0.41
CHMP3-202ENST00000393773 SMRP1Q8NCR6 262 aa17.63■□□□□ 0.41
CHMP3-202ENST00000393773 SPPL3Q8TCT6 385 aa17.63■□□□□ 0.41
CHMP3-202ENST00000393773 MAP4K1Q92918 833 aa17.63■□□□□ 0.41
CHMP3-202ENST00000393773 MTA3Q9BTC8 594 aa17.63■□□□□ 0.41
CHMP3-202ENST00000393773 FTHL17Q9BXU8 183 aa17.63■□□□□ 0.41
CHMP3-202ENST00000393773 PSTPIP2Q9H939 334 aa17.63■□□□□ 0.41
CHMP3-202ENST00000393773 JPH1Q9HDC5 661 aaPredicted RBP17.63■□□□□ 0.41
CHMP3-202ENST00000393773 JADE2Q9NQC1 790 aa17.63■□□□□ 0.41
CHMP3-202ENST00000393773 CLEC1BQ9P126 229 aa17.63■□□□□ 0.41
CHMP3-202ENST00000393773 RRN3P2A6NIE6 340 aa17.62■□□□□ 0.41
CHMP3-202ENST00000393773 STXBP3O00186 592 aa17.62■□□□□ 0.41
CHMP3-202ENST00000393773 PRC1O43663 620 aa17.62■□□□□ 0.41
CHMP3-202ENST00000393773 RXRAP19793 462 aa17.62■□□□□ 0.41
CHMP3-202ENST00000393773 NDUFV1P49821 464 aa17.62■□□□□ 0.41
CHMP3-202ENST00000393773 TMEM62Q0P6H9 643 aa17.62■□□□□ 0.41
CHMP3-202ENST00000393773 PAN2Q504Q3 1202 aaKnown RBP17.62■□□□□ 0.41
CHMP3-202ENST00000393773 NAALADL2Q58DX5 795 aa17.62■□□□□ 0.41
CHMP3-202ENST00000393773 EFHBQ8N7U6 833 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms