RNA–Protein interactions for RNA: ENST00000368019.5

USF1-201, Transcript of upstream transcription factor 1, humanhuman

TSL 5 BASIC

Gene USF1, Length 998 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-201ENST00000368019 PTPN21Q16825 1174 aa12.78□□□□□ -0.36
USF1-201ENST00000368019 LRIT3Q3SXY7 679 aa12.78□□□□□ -0.36
USF1-201ENST00000368019 COBLL1Q53SF7 1204 aa12.78□□□□□ -0.36
USF1-201ENST00000368019 HSP90AA4PQ58FG1 418 aa12.78□□□□□ -0.36
USF1-201ENST00000368019 WWC2Q6AWC2 1192 aa12.78□□□□□ -0.36
USF1-201ENST00000368019 KLHL10Q6JEL2 608 aa12.78□□□□□ -0.36
USF1-201ENST00000368019 CCDC70Q6NSX1 233 aa12.78□□□□□ -0.36
USF1-201ENST00000368019 IQCA1Q86XH1 822 aa12.78□□□□□ -0.36
USF1-201ENST00000368019 MB21D1Q8N884 522 aa12.78□□□□□ -0.36
USF1-201ENST00000368019 ZNF507Q8TCN5 953 aa12.78□□□□□ -0.36
USF1-201ENST00000368019 AFAP1L1Q8TED9 768 aa12.78□□□□□ -0.36
USF1-201ENST00000368019 NELFBQ8WX92 580 aa12.78□□□□□ -0.36
USF1-201ENST00000368019 EPSTI1Q96J88 318 aa12.78□□□□□ -0.36
USF1-201ENST00000368019 ZSCAN10Q96SZ4 725 aaPredicted RBP12.78□□□□□ -0.36
USF1-201ENST00000368019 FAN1Q9Y2M0 1017 aa12.78□□□□□ -0.36
USF1-201ENST00000368019 SAR1BQ9Y6B6 198 aa12.78□□□□□ -0.36
USF1-201ENST00000368019 SMCHD1A6NHR9 2005 aa12.78□□□□□ -0.36
USF1-201ENST00000368019 CUL9Q8IWT3 2517 aa12.77□□□□□ -0.37
USF1-201ENST00000368019 A0A0U1RQG5 324 aaPredicted RBP12.77□□□□□ -0.37
USF1-201ENST00000368019 A0A1W2PQJ5 194 aa12.77□□□□□ -0.37
USF1-201ENST00000368019 A0A1W2PRG0 241 aa12.77□□□□□ -0.37
USF1-201ENST00000368019 EIF3CLB5ME19 914 aaKnown RBP12.77□□□□□ -0.37
USF1-201ENST00000368019 LAD1O00515 517 aa12.77□□□□□ -0.37
USF1-201ENST00000368019 SHOX2O60902 331 aaPredicted RBP12.77□□□□□ -0.37
USF1-201ENST00000368019 RPN1P04843 607 aaKnown RBP12.77□□□□□ -0.37
USF1-201ENST00000368019 STX17P56962 302 aa12.77□□□□□ -0.37
USF1-201ENST00000368019 CORO7P57737 925 aa12.77□□□□□ -0.37
USF1-201ENST00000368019 GRB14Q14449 540 aa12.77□□□□□ -0.37
USF1-201ENST00000368019 SEPT2Q15019 361 aa12.77□□□□□ -0.37
USF1-201ENST00000368019 LRRC26Q2I0M4 334 aa12.77□□□□□ -0.37
USF1-201ENST00000368019 GALNT17Q6IS24 598 aa12.77□□□□□ -0.37
USF1-201ENST00000368019 GBP6Q6ZN66 633 aa12.77□□□□□ -0.37
USF1-201ENST00000368019 FAM114A1Q8IWE2 563 aa12.77□□□□□ -0.37
USF1-201ENST00000368019 AMOTL1Q8IY63 956 aa12.77□□□□□ -0.37
USF1-201ENST00000368019 ADSSL1Q8N142 457 aa12.77□□□□□ -0.37
USF1-201ENST00000368019 NPLOC4Q8TAT6 608 aa12.77□□□□□ -0.37
USF1-201ENST00000368019 COG1Q8WTW3 980 aa12.77□□□□□ -0.37
USF1-201ENST00000368019 NUP133Q8WUM0 1156 aa12.77□□□□□ -0.37
USF1-201ENST00000368019 DHTKD1Q96HY7 919 aaPredicted RBP12.77□□□□□ -0.37
USF1-201ENST00000368019 EIF3CQ99613 913 aaKnown RBP12.77□□□□□ -0.37
USF1-201ENST00000368019 CCSER1Q9C0I3 900 aa12.77□□□□□ -0.37
USF1-201ENST00000368019 RPAP3Q9H6T3 665 aaPredicted RBP12.77□□□□□ -0.37
USF1-201ENST00000368019 HPCAL4Q9UM19 191 aa12.77□□□□□ -0.37
USF1-201ENST00000368019 LUC7L2Q9Y383 392 aaKnown RBP12.77□□□□□ -0.37
USF1-201ENST00000368019 REXO2Q9Y3B8 237 aaKnown RBP12.77□□□□□ -0.37
USF1-201ENST00000368019 PARP1P09874 1014 aaKnown RBP12.76□□□□□ -0.37
USF1-201ENST00000368019 TNFRSF8P28908 595 aa12.76□□□□□ -0.37
USF1-201ENST00000368019 TROAPQ12815 778 aa12.76□□□□□ -0.37
USF1-201ENST00000368019 PTGDRQ13258 359 aa12.76□□□□□ -0.37
USF1-201ENST00000368019 RRP12Q5JTH9 1297 aaKnown RBP12.76□□□□□ -0.37
USF1-201ENST00000368019 MFSD14CQ5VZR4 134 aa12.76□□□□□ -0.37
USF1-201ENST00000368019 FOXR2Q6PJQ5 311 aa12.76□□□□□ -0.37
USF1-201ENST00000368019 EFCAB13Q8IY85 973 aa12.76□□□□□ -0.37
USF1-201ENST00000368019 TDHQ8IZJ6 230 aa12.76□□□□□ -0.37
USF1-201ENST00000368019 MMGT1Q8N4V1 131 aa12.76□□□□□ -0.37
USF1-201ENST00000368019 CCDC155Q8N6L0 562 aa12.76□□□□□ -0.37
USF1-201ENST00000368019 DAGLBQ8NCG7 672 aa12.76□□□□□ -0.37
USF1-201ENST00000368019 CPLX3Q8WVH0 158 aa12.76□□□□□ -0.37
USF1-201ENST00000368019 CRNKL1Q9BZJ0 848 aaKnown RBP12.76□□□□□ -0.37
USF1-201ENST00000368019 ZSWIM4Q9H7M6 989 aa12.76□□□□□ -0.37
USF1-201ENST00000368019 DCP1AQ9NPI6 582 aaPredicted RBP12.76□□□□□ -0.37
USF1-201ENST00000368019 TAB2Q9NYJ8 693 aa12.76□□□□□ -0.37
USF1-201ENST00000368019 VPS54Q9P1Q0 977 aa12.76□□□□□ -0.37
USF1-201ENST00000368019 ABCB11O95342 1321 aa12.76□□□□□ -0.37
USF1-201ENST00000368019 ATXN2Q99700 1313 aaKnown RBP12.76□□□□□ -0.37
USF1-201ENST00000368019 COL11A1P12107 1806 aaPredicted RBP12.76□□□□□ -0.37
USF1-201ENST00000368019 BICDL2A1A5D9 508 aa12.75□□□□□ -0.37
USF1-201ENST00000368019 LRRIQ3A6PVS8 624 aaPredicted RBP12.75□□□□□ -0.37
USF1-201ENST00000368019 RHOBTB3O94955 611 aa12.75□□□□□ -0.37
USF1-201ENST00000368019 IPO7O95373 1038 aaKnown RBP12.75□□□□□ -0.37
USF1-201ENST00000368019 SYF2O95926 243 aaKnown RBP12.75□□□□□ -0.37
USF1-201ENST00000368019 RHOXF2BP0C7M4 288 aa12.75□□□□□ -0.37
USF1-201ENST00000368019 HNRNPH3P31942 346 aaKnown RBP12.75□□□□□ -0.37
USF1-201ENST00000368019 PRPHP41219 470 aa12.75□□□□□ -0.37
USF1-201ENST00000368019 UBXN1Q04323 297 aa12.75□□□□□ -0.37
USF1-201ENST00000368019 ORC2Q13416 577 aaPredicted RBP12.75□□□□□ -0.37
USF1-201ENST00000368019 COG2Q14746 738 aa12.75□□□□□ -0.37
USF1-201ENST00000368019 KIAA1755Q5JYT7 1200 aa12.75□□□□□ -0.37
USF1-201ENST00000368019 IFIT1BQ5T764 474 aaKnown RBP12.75□□□□□ -0.37
USF1-201ENST00000368019 LRRC31Q6UY01 552 aa12.75□□□□□ -0.37
USF1-201ENST00000368019 SIAH1Q8IUQ4 282 aa12.75□□□□□ -0.37
USF1-201ENST00000368019 ENAHQ8N8S7 591 aaPredicted RBP12.75□□□□□ -0.37
USF1-201ENST00000368019 NOA1Q8NC60 698 aaKnown RBP12.75□□□□□ -0.37
USF1-201ENST00000368019 TRPV1Q8NER1 839 aa12.75□□□□□ -0.37
USF1-201ENST00000368019 IPO4Q8TEX9 1081 aaKnown RBP12.75□□□□□ -0.37
USF1-201ENST00000368019 PPM1EQ8WY54 764 aa12.75□□□□□ -0.37
USF1-201ENST00000368019 CCDC47Q96A33 483 aaKnown RBP12.75□□□□□ -0.37
USF1-201ENST00000368019 SLF1Q9BQI6 1058 aa12.75□□□□□ -0.37
USF1-201ENST00000368019 RHOXF2Q9BQY4 288 aa12.75□□□□□ -0.37
USF1-201ENST00000368019 TTYH3Q9C0H2 523 aa12.75□□□□□ -0.37
USF1-201ENST00000368019 TOMM22Q9NS69 142 aa12.75□□□□□ -0.37
USF1-201ENST00000368019 MCM9Q9NXL9 1143 aa12.75□□□□□ -0.37
USF1-201ENST00000368019 HOXC10Q9NYD6 342 aa12.75□□□□□ -0.37
USF1-201ENST00000368019 MAGEC2Q9UBF1 373 aaPredicted RBP12.75□□□□□ -0.37
USF1-201ENST00000368019 DDX20Q9UHI6 824 aaKnown RBP12.75□□□□□ -0.37
USF1-201ENST00000368019 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.75□□□□□ -0.37
USF1-201ENST00000368019 LTBP2Q14767 1821 aa12.74□□□□□ -0.37
USF1-201ENST00000368019 A0A0U1RQJ8 604 aa12.74□□□□□ -0.37
USF1-201ENST00000368019 PSMA7O14818 248 aa12.74□□□□□ -0.37
USF1-201ENST00000368019 PRKAB2O43741 272 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms