RNA–Protein interactions for RNA: ENST00000367257.8

SYNE1-209, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 5,022 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-209ENST00000367257 PIK3CAP42336 1068 aa9.6□□□□□ -0.87
SYNE1-209ENST00000367257 ECE1P42892 770 aa9.6□□□□□ -0.87
SYNE1-209ENST00000367257 KLC3Q6P597 504 aa9.6□□□□□ -0.87
SYNE1-209ENST00000367257 LCA5Q86VQ0 697 aa9.6□□□□□ -0.87
SYNE1-209ENST00000367257 ARHGEF25Q86VW2 580 aa9.6□□□□□ -0.87
SYNE1-209ENST00000367257 FAM186BQ8IYM0 893 aa9.6□□□□□ -0.87
SYNE1-209ENST00000367257 RBM41Q96IZ5 413 aaKnown RBP9.6□□□□□ -0.87
SYNE1-209ENST00000367257 STOML1Q9UBI4 398 aa9.6□□□□□ -0.87
SYNE1-209ENST00000367257 SETD1BQ9UPS6 1966 aaKnown RBP9.59□□□□□ -0.87
SYNE1-209ENST00000367257 UBAP1LF5GYI3 381 aa9.59□□□□□ -0.87
SYNE1-209ENST00000367257 ARL4AP40617 200 aa9.59□□□□□ -0.87
SYNE1-209ENST00000367257 PTGDRQ13258 359 aa9.59□□□□□ -0.87
SYNE1-209ENST00000367257 KLHL38Q2WGJ6 581 aa9.59□□□□□ -0.87
SYNE1-209ENST00000367257 NIM1KQ8IY84 436 aa9.59□□□□□ -0.87
SYNE1-209ENST00000367257 ARL10Q8N8L6 244 aa9.59□□□□□ -0.87
SYNE1-209ENST00000367257 LINC00301Q8NCQ3 95 aa9.59□□□□□ -0.87
SYNE1-209ENST00000367257 THOC1Q96FV9 657 aaKnown RBP9.59□□□□□ -0.87
SYNE1-209ENST00000367257 DPH5Q9H2P9 285 aa9.59□□□□□ -0.87
SYNE1-209ENST00000367257 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.59□□□□□ -0.87
SYNE1-209ENST00000367257 H7C0C1 242 aa9.59□□□□□ -0.87
SYNE1-209ENST00000367257 KRT37O76014 449 aa9.59□□□□□ -0.87
SYNE1-209ENST00000367257 MMP1P03956 469 aa9.59□□□□□ -0.87
SYNE1-209ENST00000367257 TAC1P20366 129 aa9.59□□□□□ -0.87
SYNE1-209ENST00000367257 IFNA8P32881 189 aa9.59□□□□□ -0.87
SYNE1-209ENST00000367257 ATP5OP48047 213 aa9.59□□□□□ -0.87
SYNE1-209ENST00000367257 SERPINB4P48594 390 aa9.59□□□□□ -0.87
SYNE1-209ENST00000367257 SKOR1P84550 965 aa9.59□□□□□ -0.87
SYNE1-209ENST00000367257 SF3A3Q12874 501 aaKnown RBP eCLIP9.59□□□□□ -0.87
SYNE1-209ENST00000367257 AP3B2Q13367 1082 aa9.59□□□□□ -0.87
SYNE1-209ENST00000367257 TMCO4Q5TGY1 634 aa9.59□□□□□ -0.87
SYNE1-209ENST00000367257 OLFML1Q6UWY5 402 aa9.59□□□□□ -0.87
SYNE1-209ENST00000367257 KIAA0825Q8IV33 1275 aa9.59□□□□□ -0.87
SYNE1-209ENST00000367257 LZICQ8WZA0 190 aa9.59□□□□□ -0.87
SYNE1-209ENST00000367257 LRRC37BQ96QE4 947 aa9.59□□□□□ -0.87
SYNE1-209ENST00000367257 DHX36Q9H2U1 1008 aaKnown RBP9.59□□□□□ -0.87
SYNE1-209ENST00000367257 PCDHA5Q9Y5H7 936 aa9.59□□□□□ -0.87
SYNE1-209ENST00000367257 MAN1A2O60476 641 aa9.59□□□□□ -0.87
SYNE1-209ENST00000367257 PDHA1P08559 390 aa9.59□□□□□ -0.87
SYNE1-209ENST00000367257 ABCB4P21439 1286 aa9.59□□□□□ -0.87
SYNE1-209ENST00000367257 HDAC11Q96DB2 347 aa9.59□□□□□ -0.87
SYNE1-209ENST00000367257 MRRFQ96E11 262 aaKnown RBP9.59□□□□□ -0.87
SYNE1-209ENST00000367257 FMO2Q99518 471 aa9.59□□□□□ -0.87
SYNE1-209ENST00000367257 ZCCHC17Q9NP64 241 aaKnown RBP9.59□□□□□ -0.87
SYNE1-209ENST00000367257 RHBDL2Q9NX52 303 aa9.59□□□□□ -0.87
SYNE1-209ENST00000367257 SENP1Q9P0U3 644 aa9.59□□□□□ -0.87
SYNE1-209ENST00000367257 DIP2AQ14689 1571 aa9.59□□□□□ -0.87
SYNE1-209ENST00000367257 TARSL2A2RTX5 802 aaKnown RBP9.59□□□□□ -0.87
SYNE1-209ENST00000367257 CTNND1O60716 968 aaKnown RBP9.59□□□□□ -0.87
SYNE1-209ENST00000367257 TECP42680 631 aa9.59□□□□□ -0.87
SYNE1-209ENST00000367257 KIF23Q02241 960 aaPredicted RBP9.59□□□□□ -0.87
SYNE1-209ENST00000367257 SPARCL1Q14515 664 aa9.59□□□□□ -0.87
SYNE1-209ENST00000367257 ARHGEF6Q15052 776 aa9.59□□□□□ -0.87
SYNE1-209ENST00000367257 INAQ16352 499 aa9.59□□□□□ -0.87
SYNE1-209ENST00000367257 OTUD7BQ6GQQ9 843 aa9.59□□□□□ -0.87
SYNE1-209ENST00000367257 NSUN7Q8NE18 718 aaKnown RBP9.59□□□□□ -0.87
SYNE1-209ENST00000367257 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.59□□□□□ -0.87
SYNE1-209ENST00000367257 MLXIPQ9HAP2 919 aa9.59□□□□□ -0.87
SYNE1-209ENST00000367257 ADD3Q9UEY8 706 aaKnown RBP9.59□□□□□ -0.87
SYNE1-209ENST00000367257 QRICH2Q9H0J4 1663 aa9.59□□□□□ -0.87
SYNE1-209ENST00000367257 FAM187AA6NFU0 413 aa9.58□□□□□ -0.88
SYNE1-209ENST00000367257 KPNA7A9QM74 516 aa9.58□□□□□ -0.88
SYNE1-209ENST00000367257 NR2F2P24468 414 aa9.58□□□□□ -0.88
SYNE1-209ENST00000367257 BLVRAP53004 296 aa9.58□□□□□ -0.88
SYNE1-209ENST00000367257 EHHADHQ08426 723 aa9.58□□□□□ -0.88
SYNE1-209ENST00000367257 NNTQ13423 1086 aa9.58□□□□□ -0.88
SYNE1-209ENST00000367257 FAM160B2Q86V87 743 aa9.58□□□□□ -0.88
SYNE1-209ENST00000367257 RFX6Q8HWS3 928 aa9.58□□□□□ -0.88
SYNE1-209ENST00000367257 PDIK1LQ8N165 341 aa9.58□□□□□ -0.88
SYNE1-209ENST00000367257 MED10Q9BTT4 135 aa9.58□□□□□ -0.88
SYNE1-209ENST00000367257 ZMYND12Q9H0C1 365 aa9.58□□□□□ -0.88
SYNE1-209ENST00000367257 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.58□□□□□ -0.88
SYNE1-209ENST00000367257 ST7Q9NRC1 585 aa9.58□□□□□ -0.88
SYNE1-209ENST00000367257 TRIM33Q9UPN9 1127 aa9.58□□□□□ -0.88
SYNE1-209ENST00000367257 ARIH1Q9Y4X5 557 aaPredicted RBP9.58□□□□□ -0.88
SYNE1-209ENST00000367257 PFASO15067 1338 aa9.58□□□□□ -0.88
SYNE1-209ENST00000367257 USP17L12C9JPN9 530 aa9.58□□□□□ -0.88
SYNE1-209ENST00000367257 USP17L21D6R901 530 aa9.58□□□□□ -0.88
SYNE1-209ENST00000367257 AP3B1O00203 1094 aa9.58□□□□□ -0.88
SYNE1-209ENST00000367257 NDUFA10O95299 355 aa9.58□□□□□ -0.88
SYNE1-209ENST00000367257 PAMP19021 973 aa9.58□□□□□ -0.88
SYNE1-209ENST00000367257 PAX7P23759 505 aa9.58□□□□□ -0.88
SYNE1-209ENST00000367257 CCNA1P78396 465 aa9.58□□□□□ -0.88
SYNE1-209ENST00000367257 SFSWAPQ12872 951 aaKnown RBP9.58□□□□□ -0.88
SYNE1-209ENST00000367257 MIS18BP1Q6P0N0 1132 aa9.58□□□□□ -0.88
SYNE1-209ENST00000367257 APOA5Q6Q788 366 aa9.58□□□□□ -0.88
SYNE1-209ENST00000367257 NSMFQ6X4W1 530 aa9.58□□□□□ -0.88
SYNE1-209ENST00000367257 TBC1D1Q86TI0 1168 aaPredicted RBP9.58□□□□□ -0.88
SYNE1-209ENST00000367257 PPM1KQ8N3J5 372 aa9.58□□□□□ -0.88
SYNE1-209ENST00000367257 TGFBRAP1Q8WUH2 860 aa9.58□□□□□ -0.88
SYNE1-209ENST00000367257 GLG1Q92896 1179 aa9.58□□□□□ -0.88
SYNE1-209ENST00000367257 ZNF212Q9UDV6 495 aa9.58□□□□□ -0.88
SYNE1-209ENST00000367257 A0A0D9SFI3 127 aa9.58□□□□□ -0.88
SYNE1-209ENST00000367257 ARHGAP10A1A4S6 786 aa9.58□□□□□ -0.88
SYNE1-209ENST00000367257 RIMBP2O15034 1052 aa9.58□□□□□ -0.88
SYNE1-209ENST00000367257 MYBL1P10243 752 aa9.58□□□□□ -0.88
SYNE1-209ENST00000367257 PAPOLAP51003 745 aaKnown RBP9.58□□□□□ -0.88
SYNE1-209ENST00000367257 BASP1P80723 227 aaKnown RBP9.58□□□□□ -0.88
SYNE1-209ENST00000367257 KRT80Q6KB66 452 aa9.58□□□□□ -0.88
SYNE1-209ENST00000367257 FAM173BQ6P4H8 233 aa9.58□□□□□ -0.88
SYNE1-209ENST00000367257 METTL23Q86XA0 190 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms