RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 BCORL1Q5H9F3 1711 aa12.59□□□□□ -0.39
SYNE1-204ENST00000367248 CEP170BQ9Y4F5 1589 aaPredicted RBP12.59□□□□□ -0.39
SYNE1-204ENST00000367248 DPYSL4O14531 572 aa12.59□□□□□ -0.39
SYNE1-204ENST00000367248 GIPC1O14908 333 aa12.59□□□□□ -0.39
SYNE1-204ENST00000367248 BUB1O43683 1085 aa12.59□□□□□ -0.39
SYNE1-204ENST00000367248 ITIH3Q06033 890 aa12.59□□□□□ -0.39
SYNE1-204ENST00000367248 TTLL4Q14679 1199 aa12.59□□□□□ -0.39
SYNE1-204ENST00000367248 WHAMMP3Q1A5X7 153 aa12.59□□□□□ -0.39
SYNE1-204ENST00000367248 INTS5Q6P9B9 1019 aaKnown RBP12.59□□□□□ -0.39
SYNE1-204ENST00000367248 DYNC1LI2O43237 492 aaPredicted RBP12.59□□□□□ -0.39
SYNE1-204ENST00000367248 CPLX4Q7Z7G2 160 aa12.59□□□□□ -0.39
SYNE1-204ENST00000367248 LDHDQ86WU2 507 aa12.59□□□□□ -0.39
SYNE1-204ENST00000367248 ADGRF4Q8IZF3 695 aa12.59□□□□□ -0.39
SYNE1-204ENST00000367248 FAM81BQ96LP2 452 aa12.59□□□□□ -0.39
SYNE1-204ENST00000367248 CCDC94Q9BW85 323 aaPredicted RBP12.59□□□□□ -0.39
SYNE1-204ENST00000367248 HAUS2Q9NVX0 235 aa12.59□□□□□ -0.39
SYNE1-204ENST00000367248 TMEM260Q9NX78 707 aa12.59□□□□□ -0.39
SYNE1-204ENST00000367248 VPS18Q9P253 973 aa12.59□□□□□ -0.39
SYNE1-204ENST00000367248 MYO3AQ8NEV4 1616 aa12.59□□□□□ -0.39
SYNE1-204ENST00000367248 CAPN2P17655 700 aa12.59□□□□□ -0.39
SYNE1-204ENST00000367248 MAP7D1Q3KQU3 841 aa12.59□□□□□ -0.39
SYNE1-204ENST00000367248 FAM76AQ8TAV0 307 aa12.59□□□□□ -0.39
SYNE1-204ENST00000367248 NEK9Q8TD19 979 aa12.59□□□□□ -0.39
SYNE1-204ENST00000367248 TMEM39BQ9GZU3 492 aa12.59□□□□□ -0.39
SYNE1-204ENST00000367248 THAP12O43422 761 aa12.59□□□□□ -0.39
SYNE1-204ENST00000367248 COPB2P35606 906 aa12.59□□□□□ -0.39
SYNE1-204ENST00000367248 PDZD4Q76G19 769 aaPredicted RBP12.59□□□□□ -0.39
SYNE1-204ENST00000367248 RHPN2Q8IUC4 686 aa12.59□□□□□ -0.39
SYNE1-204ENST00000367248 CLEC10AQ8IUN9 316 aa12.59□□□□□ -0.39
SYNE1-204ENST00000367248 ZNF579Q8NAF0 562 aaKnown RBP12.59□□□□□ -0.39
SYNE1-204ENST00000367248 MYO1FO00160 1098 aa12.58□□□□□ -0.39
SYNE1-204ENST00000367248 LMNB1P20700 586 aa12.58□□□□□ -0.39
SYNE1-204ENST00000367248 PEX3P56589 373 aa12.58□□□□□ -0.39
SYNE1-204ENST00000367248 RSBN1LQ6PCB5 846 aaPredicted RBP12.58□□□□□ -0.39
SYNE1-204ENST00000367248 CAPN12Q6ZSI9 719 aa12.58□□□□□ -0.39
SYNE1-204ENST00000367248 GIMAP8Q8ND71 665 aaPredicted RBP12.58□□□□□ -0.39
SYNE1-204ENST00000367248 SPZ1Q9BXG8 430 aa12.58□□□□□ -0.39
SYNE1-204ENST00000367248 SAMSN1Q9NSI8 373 aaKnown RBP12.58□□□□□ -0.39
SYNE1-204ENST00000367248 MKRN1Q9UHC7 482 aaKnown RBP12.58□□□□□ -0.39
SYNE1-204ENST00000367248 E9PMD0 336 aa12.58□□□□□ -0.4
SYNE1-204ENST00000367248 LRRC63Q05C16 580 aa12.58□□□□□ -0.4
SYNE1-204ENST00000367248 BFSP1Q12934 665 aa12.58□□□□□ -0.4
SYNE1-204ENST00000367248 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.58□□□□□ -0.4
SYNE1-204ENST00000367248 THAP9Q9H5L6 903 aa12.58□□□□□ -0.4
SYNE1-204ENST00000367248 ESYT2A0FGR8 921 aa12.58□□□□□ -0.4
SYNE1-204ENST00000367248 GYS1P13807 737 aa12.58□□□□□ -0.4
SYNE1-204ENST00000367248 SNAPC2Q13487 334 aa12.58□□□□□ -0.4
SYNE1-204ENST00000367248 PPP2R5EQ16537 467 aa12.58□□□□□ -0.4
SYNE1-204ENST00000367248 PADI6Q6TGC4 694 aa12.58□□□□□ -0.4
SYNE1-204ENST00000367248 TCP11Q8WWU5 503 aa12.58□□□□□ -0.4
SYNE1-204ENST00000367248 ATP6V0A4Q9HBG4 840 aa12.58□□□□□ -0.4
SYNE1-204ENST00000367248 EXOSC10Q01780 885 aaKnown RBP12.58□□□□□ -0.4
SYNE1-204ENST00000367248 SLFN12LQ6IEE8 588 aa12.58□□□□□ -0.4
SYNE1-204ENST00000367248 UNC13DQ70J99 1090 aa12.58□□□□□ -0.4
SYNE1-204ENST00000367248 SPATA31D1Q6ZQQ2 1576 aa12.58□□□□□ -0.4
SYNE1-204ENST00000367248 LRRN2O75325 713 aa12.58□□□□□ -0.4
SYNE1-204ENST00000367248 SURF1Q15526 300 aa12.58□□□□□ -0.4
SYNE1-204ENST00000367248 PPP4R3CPQ6ZMV5 832 aa12.58□□□□□ -0.4
SYNE1-204ENST00000367248 SMC6Q96SB8 1091 aa12.58□□□□□ -0.4
SYNE1-204ENST00000367248 SFNP31947 248 aa12.58□□□□□ -0.4
SYNE1-204ENST00000367248 KCNJ6P48051 423 aa12.58□□□□□ -0.4
SYNE1-204ENST00000367248 MAP1SQ66K74 1059 aaPredicted RBP12.58□□□□□ -0.4
SYNE1-204ENST00000367248 STAG2Q8N3U4 1231 aa12.58□□□□□ -0.4
SYNE1-204ENST00000367248 RBM46Q8TBY0 533 aaKnown RBP12.58□□□□□ -0.4
SYNE1-204ENST00000367248 MSTO1Q9BUK6 570 aa12.58□□□□□ -0.4
SYNE1-204ENST00000367248 DIP2BQ9P265 1576 aa12.57□□□□□ -0.4
SYNE1-204ENST00000367248 RESP18Q5W5W9 173 aa12.57□□□□□ -0.4
SYNE1-204ENST00000367248 GLYCTKQ8IVS8 523 aa12.57□□□□□ -0.4
SYNE1-204ENST00000367248 MAP7D3Q8IWC1 876 aa12.57□□□□□ -0.4
SYNE1-204ENST00000367248 OR6B3Q8NGW1 331 aa12.57□□□□□ -0.4
SYNE1-204ENST00000367248 PPM1EQ8WY54 764 aa12.57□□□□□ -0.4
SYNE1-204ENST00000367248 RPF1Q9H9Y2 349 aaKnown RBP12.57□□□□□ -0.4
SYNE1-204ENST00000367248 ADGRB1O14514 1584 aa12.57□□□□□ -0.4
SYNE1-204ENST00000367248 PVALEFA0A1B0GWK0 134 aa12.57□□□□□ -0.4
SYNE1-204ENST00000367248 ELMSAN1Q6PJG2 1045 aa12.57□□□□□ -0.4
SYNE1-204ENST00000367248 NBPF11Q86T75 865 aa12.57□□□□□ -0.4
SYNE1-204ENST00000367248 LRRC8AQ8IWT6 810 aa12.57□□□□□ -0.4
SYNE1-204ENST00000367248 RAB17Q9H0T7 212 aa12.57□□□□□ -0.4
SYNE1-204ENST00000367248 MYOZ2Q9NPC6 264 aa12.57□□□□□ -0.4
SYNE1-204ENST00000367248 P4HBP07237 508 aaKnown RBP12.57□□□□□ -0.4
SYNE1-204ENST00000367248 SF3A3Q12874 501 aaKnown RBP eCLIP12.57□□□□□ -0.4
SYNE1-204ENST00000367248 CUL4BQ13620 913 aa12.57□□□□□ -0.4
SYNE1-204ENST00000367248 OR6J1Q8NGC5 347 aa12.57□□□□□ -0.4
SYNE1-204ENST00000367248 NDST4Q9H3R1 872 aa12.57□□□□□ -0.4
SYNE1-204ENST00000367248 WDR46O15213 610 aaKnown RBP12.57□□□□□ -0.4
SYNE1-204ENST00000367248 NDUFB10O96000 172 aa12.57□□□□□ -0.4
SYNE1-204ENST00000367248 ELF2Q15723 593 aa12.57□□□□□ -0.4
SYNE1-204ENST00000367248 SLC10A5Q5PT55 438 aa12.57□□□□□ -0.4
SYNE1-204ENST00000367248 SWSAP1Q6NVH7 229 aa12.57□□□□□ -0.4
SYNE1-204ENST00000367248 ANKS4BQ8N8V4 417 aa12.57□□□□□ -0.4
SYNE1-204ENST00000367248 TRIM11Q96F44 468 aa12.57□□□□□ -0.4
SYNE1-204ENST00000367248 LRRC4Q9HBW1 653 aa12.57□□□□□ -0.4
SYNE1-204ENST00000367248 RSPH14Q9UHP6 348 aa12.57□□□□□ -0.4
SYNE1-204ENST00000367248 ARHGEF37A1IGU5 675 aa12.57□□□□□ -0.4
SYNE1-204ENST00000367248 HGSO14964 777 aaPredicted RBP12.57□□□□□ -0.4
SYNE1-204ENST00000367248 TMEM62Q0P6H9 643 aa12.57□□□□□ -0.4
SYNE1-204ENST00000367248 ZNF394Q53GI3 561 aa12.57□□□□□ -0.4
SYNE1-204ENST00000367248 SFR1Q86XK3 245 aa12.57□□□□□ -0.4
SYNE1-204ENST00000367248 RSAD2Q8WXG1 361 aa12.57□□□□□ -0.4
SYNE1-204ENST00000367248 MTFR1LQ9H019 292 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms