RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 RSPH10BP0C881 870 aa22.95■■□□□ 1.26
CCDC88B-203ENST00000359902 MYBP10242 640 aa22.95■■□□□ 1.26
CCDC88B-203ENST00000359902 KCNH2Q12809 1159 aa22.95■■□□□ 1.26
CCDC88B-203ENST00000359902 DLGAP5Q15398 846 aa22.95■■□□□ 1.26
CCDC88B-203ENST00000359902 SLC9C1Q4G0N8 1177 aa22.95■■□□□ 1.26
CCDC88B-203ENST00000359902 TEX2Q8IWB9 1127 aa22.95■■□□□ 1.26
CCDC88B-203ENST00000359902 WDR18Q9BV38 432 aa22.95■■□□□ 1.26
CCDC88B-203ENST00000359902 RUSC1Q9BVN2 902 aa22.95■■□□□ 1.26
CCDC88B-203ENST00000359902 SUGCTQ9HAC7 445 aa22.95■■□□□ 1.26
CCDC88B-203ENST00000359902 SNX12Q9UMY4 172 aa22.95■■□□□ 1.26
CCDC88B-203ENST00000359902 TNS1Q9HBL0 1735 aaKnown RBP22.95■■□□□ 1.26
CCDC88B-203ENST00000359902 RBAK-RBAKDNI3L0D1 243 aa22.94■■□□□ 1.26
CCDC88B-203ENST00000359902 SERPING1P05155 500 aa22.94■■□□□ 1.26
CCDC88B-203ENST00000359902 VIL1P09327 827 aaKnown RBP22.94■■□□□ 1.26
CCDC88B-203ENST00000359902 OTOP1Q7RTM1 612 aa22.94■■□□□ 1.26
CCDC88B-203ENST00000359902 HSD17B14Q9BPX1 270 aa22.94■■□□□ 1.26
CCDC88B-203ENST00000359902 GBP3Q9H0R5 595 aa22.94■■□□□ 1.26
CCDC88B-203ENST00000359902 ZCCHC17Q9NP64 241 aaKnown RBP22.94■■□□□ 1.26
CCDC88B-203ENST00000359902 SALL4Q9UJQ4 1053 aa22.94■■□□□ 1.26
CCDC88B-203ENST00000359902 RABGAP1Q9Y3P9 1069 aa22.94■■□□□ 1.26
CCDC88B-203ENST00000359902 PRPF6O94906 941 aaKnown RBP22.94■■□□□ 1.26
CCDC88B-203ENST00000359902 TDRD12Q587J7 1177 aaKnown RBP22.94■■□□□ 1.26
CCDC88B-203ENST00000359902 CCDC174Q6PII3 467 aa22.94■■□□□ 1.26
CCDC88B-203ENST00000359902 FRMD5Q7Z6J6 570 aa22.94■■□□□ 1.26
CCDC88B-203ENST00000359902 BCAS3Q9H6U6 928 aa22.94■■□□□ 1.26
CCDC88B-203ENST00000359902 ZHX1Q9UKY1 873 aaPredicted RBP22.94■■□□□ 1.26
CCDC88B-203ENST00000359902 PSME4Q14997 1843 aa22.94■■□□□ 1.26
CCDC88B-203ENST00000359902 PDXKO00764 312 aa22.93■■□□□ 1.26
CCDC88B-203ENST00000359902 SLC30A10Q6XR72 485 aa22.93■■□□□ 1.26
CCDC88B-203ENST00000359902 KCTD17Q8N5Z5 321 aa22.93■■□□□ 1.26
CCDC88B-203ENST00000359902 RANBP17Q9H2T7 1088 aaKnown RBP22.93■■□□□ 1.26
CCDC88B-203ENST00000359902 GCOM1H8Y6P7 765 aaPredicted RBP22.93■■□□□ 1.26
CCDC88B-203ENST00000359902 POLR2MP0CAP2 368 aa22.93■■□□□ 1.26
CCDC88B-203ENST00000359902 PRLRP16471 622 aa22.93■■□□□ 1.26
CCDC88B-203ENST00000359902 RASSF7Q02833 373 aa22.93■■□□□ 1.26
CCDC88B-203ENST00000359902 BMT2Q1RMZ1 405 aa22.93■■□□□ 1.26
CCDC88B-203ENST00000359902 SPDYE2Q495Y8 402 aa22.93■■□□□ 1.26
CCDC88B-203ENST00000359902 CREG2Q8IUH2 290 aa22.93■■□□□ 1.26
CCDC88B-203ENST00000359902 GANQ9H2C0 597 aa22.93■■□□□ 1.26
CCDC88B-203ENST00000359902 POLD4Q9HCU8 107 aa22.93■■□□□ 1.26
CCDC88B-203ENST00000359902 HDAC9Q9UKV0 1011 aa22.93■■□□□ 1.26
CCDC88B-203ENST00000359902 ATAD5Q96QE3 1844 aa22.93■■□□□ 1.26
CCDC88B-203ENST00000359902 PSMD10O75832 226 aa22.92■■□□□ 1.26
CCDC88B-203ENST00000359902 RINT1Q6NUQ1 792 aa22.92■■□□□ 1.26
CCDC88B-203ENST00000359902 MSL3Q8N5Y2 521 aaKnown RBP22.92■■□□□ 1.26
CCDC88B-203ENST00000359902 ANKRD13CQ8N6S4 541 aa22.92■■□□□ 1.26
CCDC88B-203ENST00000359902 CAGE1Q8TC20 777 aa22.92■■□□□ 1.26
CCDC88B-203ENST00000359902 CHURC1Q8WUH1 139 aa22.92■■□□□ 1.26
CCDC88B-203ENST00000359902 ARMCX3Q9UH62 379 aaPredicted RBP22.92■■□□□ 1.26
CCDC88B-203ENST00000359902 ZBTB12Q9Y330 459 aaPredicted RBP22.92■■□□□ 1.26
CCDC88B-203ENST00000359902 SLITRK3O94933 977 aa22.92■■□□□ 1.26
CCDC88B-203ENST00000359902 EPS15P42566 896 aa22.92■■□□□ 1.26
CCDC88B-203ENST00000359902 CTTNQ14247 550 aaKnown RBP22.92■■□□□ 1.26
CCDC88B-203ENST00000359902 CDAN1Q8IWY9 1227 aa22.92■■□□□ 1.26
CCDC88B-203ENST00000359902 OGFOD1Q8N543 542 aa22.92■■□□□ 1.26
CCDC88B-203ENST00000359902 PIGOQ8TEQ8 1089 aa22.92■■□□□ 1.26
CCDC88B-203ENST00000359902 DRC1Q96MC2 740 aa22.92■■□□□ 1.26
CCDC88B-203ENST00000359902 TUFT1Q9NNX1 390 aa22.92■■□□□ 1.26
CCDC88B-203ENST00000359902 RNF216Q9NWF9 866 aaPredicted RBP22.92■■□□□ 1.26
CCDC88B-203ENST00000359902 AIPL1Q9NZN9 384 aa22.92■■□□□ 1.26
CCDC88B-203ENST00000359902 FRMD4AQ9P2Q2 1039 aaPredicted RBP22.92■■□□□ 1.26
CCDC88B-203ENST00000359902 CALUO43852 315 aaPredicted RBP22.91■■□□□ 1.26
CCDC88B-203ENST00000359902 RXRBP28702 533 aa22.91■■□□□ 1.26
CCDC88B-203ENST00000359902 EZH2Q15910 746 aaKnown RBP22.91■■□□□ 1.26
CCDC88B-203ENST00000359902 GRIPAP1Q4V328 841 aa22.91■■□□□ 1.26
CCDC88B-203ENST00000359902 LRCH2Q5VUJ6 765 aa22.91■■□□□ 1.26
CCDC88B-203ENST00000359902 DPY19L2P1Q6NXN4 242 aa22.91■■□□□ 1.26
CCDC88B-203ENST00000359902 SLC5A5Q92911 643 aa22.91■■□□□ 1.26
CCDC88B-203ENST00000359902 ALS2CR12Q96Q35 445 aa22.91■■□□□ 1.26
CCDC88B-203ENST00000359902 VCPKMTQ9H867 229 aa22.91■■□□□ 1.26
CCDC88B-203ENST00000359902 TARSL2A2RTX5 802 aaKnown RBP22.91■■□□□ 1.26
CCDC88B-203ENST00000359902 H3BQF6 201 aa22.91■■□□□ 1.26
CCDC88B-203ENST00000359902 TBCAO75347 108 aaKnown RBP22.91■■□□□ 1.26
CCDC88B-203ENST00000359902 PPP2R5CQ13362 524 aa22.91■■□□□ 1.26
CCDC88B-203ENST00000359902 RTKN2Q8IZC4 609 aa22.91■■□□□ 1.26
CCDC88B-203ENST00000359902 TXLNBQ8N3L3 684 aa22.91■■□□□ 1.26
CCDC88B-203ENST00000359902 TTLL6Q8N841 843 aa22.91■■□□□ 1.26
CCDC88B-203ENST00000359902 PSMD1Q99460 953 aa22.91■■□□□ 1.26
CCDC88B-203ENST00000359902 TYW1Q9NV66 732 aaKnown RBP22.91■■□□□ 1.26
CCDC88B-203ENST00000359902 RGPD3A6NKT7 1758 aaPredicted RBP22.9■■□□□ 1.26
CCDC88B-203ENST00000359902 RGPD4Q7Z3J3 1758 aa22.9■■□□□ 1.26
CCDC88B-203ENST00000359902 AKAP3O75969 853 aa22.9■■□□□ 1.26
CCDC88B-203ENST00000359902 POLD1P28340 1107 aa22.9■■□□□ 1.26
CCDC88B-203ENST00000359902 RAPGEF1Q13905 1077 aa22.9■■□□□ 1.26
CCDC88B-203ENST00000359902 TPH2Q8IWU9 490 aa22.9■■□□□ 1.26
CCDC88B-203ENST00000359902 LARGE2Q8N3Y3 721 aa22.9■■□□□ 1.26
CCDC88B-203ENST00000359902 RNF10Q8N5U6 811 aaKnown RBP22.9■■□□□ 1.26
CCDC88B-203ENST00000359902 COG1Q8WTW3 980 aa22.9■■□□□ 1.26
CCDC88B-203ENST00000359902 DYDC2Q96IM9 177 aa22.9■■□□□ 1.26
CCDC88B-203ENST00000359902 STK32BQ9NY57 414 aa22.9■■□□□ 1.26
CCDC88B-203ENST00000359902 MYH10P35580 1976 aa22.9■■□□□ 1.26
CCDC88B-203ENST00000359902 ASTN1O14525 1302 aa22.9■■□□□ 1.26
CCDC88B-203ENST00000359902 SFI1A8K8P3 1242 aa22.9■■□□□ 1.26
CCDC88B-203ENST00000359902 TBC1D12O60347 775 aa22.9■■□□□ 1.26
CCDC88B-203ENST00000359902 PLA2G6O60733 806 aa22.9■■□□□ 1.26
CCDC88B-203ENST00000359902 GCNT3O95395 438 aa22.9■■□□□ 1.26
CCDC88B-203ENST00000359902 UBXN2AP68543 259 aa22.9■■□□□ 1.26
CCDC88B-203ENST00000359902 CASP8Q14790 479 aa22.9■■□□□ 1.26
CCDC88B-203ENST00000359902 ZYXQ15942 572 aaKnown RBP22.9■■□□□ 1.26
CCDC88B-203ENST00000359902 MIGA2Q7L4E1 593 aa22.9■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms