RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 TRAF3IP3Q9Y228 551 aa23.99■■□□□ 1.43
SHMT1-202ENST00000352886 PIK3CDO00329 1044 aa23.99■■□□□ 1.43
SHMT1-202ENST00000352886 MYBP10242 640 aa23.99■■□□□ 1.43
SHMT1-202ENST00000352886 GYS2P54840 703 aa23.99■■□□□ 1.43
SHMT1-202ENST00000352886 LRRIQ3A6PVS8 624 aaPredicted RBP23.98■■□□□ 1.43
SHMT1-202ENST00000352886 RSPH10B2B2RC85 870 aa23.98■■□□□ 1.43
SHMT1-202ENST00000352886 EML1O00423 815 aa23.98■■□□□ 1.43
SHMT1-202ENST00000352886 CYP3A4P08684 503 aa23.98■■□□□ 1.43
SHMT1-202ENST00000352886 RSPH10BP0C881 870 aa23.98■■□□□ 1.43
SHMT1-202ENST00000352886 HOXD13P35453 343 aa23.98■■□□□ 1.43
SHMT1-202ENST00000352886 RAPGEF1Q13905 1077 aa23.98■■□□□ 1.43
SHMT1-202ENST00000352886 KIAA1755Q5JYT7 1200 aa23.98■■□□□ 1.43
SHMT1-202ENST00000352886 EPM2AIP1Q7L775 607 aaPredicted RBP23.98■■□□□ 1.43
SHMT1-202ENST00000352886 TXLNBQ8N3L3 684 aa23.98■■□□□ 1.43
SHMT1-202ENST00000352886 EIF2AK1Q9BQI3 630 aaKnown RBP23.98■■□□□ 1.43
SHMT1-202ENST00000352886 HERC5Q9UII4 1024 aaKnown RBP23.98■■□□□ 1.43
SHMT1-202ENST00000352886 HDAC9Q9UKV0 1011 aa23.98■■□□□ 1.43
SHMT1-202ENST00000352886 PRPF6O94906 941 aaKnown RBP23.98■■□□□ 1.43
SHMT1-202ENST00000352886 PRLRP16471 622 aa23.98■■□□□ 1.43
SHMT1-202ENST00000352886 NFRKBQ6P4R8 1299 aa23.98■■□□□ 1.43
SHMT1-202ENST00000352886 OSBPL9Q96SU4 736 aa23.98■■□□□ 1.43
SHMT1-202ENST00000352886 ARHGEF10LQ9HCE6 1279 aa23.98■■□□□ 1.43
SHMT1-202ENST00000352886 RGL1Q9NZL6 768 aa23.98■■□□□ 1.43
SHMT1-202ENST00000352886 BUB1O43683 1085 aa23.97■■□□□ 1.43
SHMT1-202ENST00000352886 CFBP00751 764 aa23.97■■□□□ 1.43
SHMT1-202ENST00000352886 ARID5AQ03989 594 aa23.97■■□□□ 1.43
SHMT1-202ENST00000352886 ACER1Q8TDN7 264 aa23.97■■□□□ 1.43
SHMT1-202ENST00000352886 PSMB7Q99436 277 aa23.97■■□□□ 1.43
SHMT1-202ENST00000352886 POLR3CQ9BUI4 534 aaPredicted RBP23.97■■□□□ 1.43
SHMT1-202ENST00000352886 RUSC1Q9BVN2 902 aa23.97■■□□□ 1.43
SHMT1-202ENST00000352886 TMOD2Q9NZR1 351 aa23.97■■□□□ 1.43
SHMT1-202ENST00000352886 SYNPO2Q9UMS6 1093 aa23.97■■□□□ 1.43
SHMT1-202ENST00000352886 RABGAP1Q9Y3P9 1069 aa23.97■■□□□ 1.43
SHMT1-202ENST00000352886 IGLV3-22A0A075B6J6 115 aa23.96■■□□□ 1.43
SHMT1-202ENST00000352886 CLRN2A0PK11 232 aa23.96■■□□□ 1.43
SHMT1-202ENST00000352886 N4BP1O75113 896 aaKnown RBP23.96■■□□□ 1.43
SHMT1-202ENST00000352886 ZMYND10O75800 440 aa23.96■■□□□ 1.43
SHMT1-202ENST00000352886 NOX5Q96PH1 765 aa23.96■■□□□ 1.43
SHMT1-202ENST00000352886 GANQ9H2C0 597 aa23.96■■□□□ 1.43
SHMT1-202ENST00000352886 POLD4Q9HCU8 107 aa23.96■■□□□ 1.43
SHMT1-202ENST00000352886 HYOU1Q9Y4L1 999 aa23.96■■□□□ 1.43
SHMT1-202ENST00000352886 TCP1P17987 556 aaKnown RBP23.96■■□□□ 1.43
SHMT1-202ENST00000352886 CXCR5P32302 372 aa23.96■■□□□ 1.43
SHMT1-202ENST00000352886 MAP9Q49MG5 647 aa23.96■■□□□ 1.43
SHMT1-202ENST00000352886 FAM133AQ8N9E0 248 aa23.96■■□□□ 1.43
SHMT1-202ENST00000352886 TBC1D5Q92609 795 aa23.96■■□□□ 1.43
SHMT1-202ENST00000352886 ARMCX3Q9UH62 379 aaPredicted RBP23.96■■□□□ 1.43
SHMT1-202ENST00000352886 NAP1L1P55209 391 aaKnown RBP23.95■■□□□ 1.43
SHMT1-202ENST00000352886 SLC30A10Q6XR72 485 aa23.95■■□□□ 1.43
SHMT1-202ENST00000352886 FRMD5Q7Z6J6 570 aa23.95■■□□□ 1.43
SHMT1-202ENST00000352886 BCAS3Q9H6U6 928 aa23.95■■□□□ 1.43
SHMT1-202ENST00000352886 PDXKO00764 312 aa23.95■■□□□ 1.42
SHMT1-202ENST00000352886 NCK2O43639 380 aa23.95■■□□□ 1.42
SHMT1-202ENST00000352886 CALUO43852 315 aaPredicted RBP23.95■■□□□ 1.42
SHMT1-202ENST00000352886 TBCAO75347 108 aaKnown RBP23.95■■□□□ 1.42
SHMT1-202ENST00000352886 EYA4O95677 639 aa23.95■■□□□ 1.42
SHMT1-202ENST00000352886 ENOX2Q16206 610 aaKnown RBP23.95■■□□□ 1.42
SHMT1-202ENST00000352886 RNF10Q8N5U6 811 aaKnown RBP23.95■■□□□ 1.42
SHMT1-202ENST00000352886 SUPT20HQ8NEM7 779 aa23.95■■□□□ 1.42
SHMT1-202ENST00000352886 WDR18Q9BV38 432 aa23.95■■□□□ 1.42
SHMT1-202ENST00000352886 AIPL1Q9NZN9 384 aa23.95■■□□□ 1.42
SHMT1-202ENST00000352886 ADAM21Q9UKJ8 722 aa23.95■■□□□ 1.42
SHMT1-202ENST00000352886 PSME4Q14997 1843 aa23.95■■□□□ 1.42
SHMT1-202ENST00000352886 CTTNQ14247 550 aaKnown RBP23.94■■□□□ 1.42
SHMT1-202ENST00000352886 SLC18A3Q16572 532 aa23.94■■□□□ 1.42
SHMT1-202ENST00000352886 CCDC174Q6PII3 467 aa23.94■■□□□ 1.42
SHMT1-202ENST00000352886 VPS18Q9P253 973 aa23.94■■□□□ 1.42
SHMT1-202ENST00000352886 TMX2Q9Y320 296 aa23.94■■□□□ 1.42
SHMT1-202ENST00000352886 SPDYE2BA6NHP3 402 aa23.94■■□□□ 1.42
SHMT1-202ENST00000352886 C21orf2O43822 256 aa23.94■■□□□ 1.42
SHMT1-202ENST00000352886 GCNT3O95395 438 aa23.94■■□□□ 1.42
SHMT1-202ENST00000352886 SPDYE6P0CI01 402 aa23.94■■□□□ 1.42
SHMT1-202ENST00000352886 ACTN1P12814 892 aa23.94■■□□□ 1.42
SHMT1-202ENST00000352886 KLHL30Q0D2K2 578 aa23.94■■□□□ 1.42
SHMT1-202ENST00000352886 ZNF572Q7Z3I7 529 aaPredicted RBP23.94■■□□□ 1.42
SHMT1-202ENST00000352886 PIGOQ8TEQ8 1089 aa23.94■■□□□ 1.42
SHMT1-202ENST00000352886 CCDC102AQ96A19 550 aa23.94■■□□□ 1.42
SHMT1-202ENST00000352886 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP23.94■■□□□ 1.42
SHMT1-202ENST00000352886 GOPCQ9HD26 462 aa23.94■■□□□ 1.42
SHMT1-202ENST00000352886 LUC7LQ9NQ29 371 aaKnown RBP23.94■■□□□ 1.42
SHMT1-202ENST00000352886 KIF13BQ9NQT8 1826 aa23.94■■□□□ 1.42
SHMT1-202ENST00000352886 SLC9A1P19634 815 aa23.93■■□□□ 1.42
SHMT1-202ENST00000352886 TNNT3P45378 269 aaPredicted RBP23.93■■□□□ 1.42
SHMT1-202ENST00000352886 ASIC2Q16515 512 aa23.93■■□□□ 1.42
SHMT1-202ENST00000352886 KLHDC7AQ5VTJ3 777 aa23.93■■□□□ 1.42
SHMT1-202ENST00000352886 SPATA4Q8NEY3 305 aa23.93■■□□□ 1.42
SHMT1-202ENST00000352886 TLR10Q9BXR5 811 aa23.93■■□□□ 1.42
SHMT1-202ENST00000352886 TYW1Q9NV66 732 aaKnown RBP23.93■■□□□ 1.42
SHMT1-202ENST00000352886 ASTN1O14525 1302 aa23.93■■□□□ 1.42
SHMT1-202ENST00000352886 A0A087X0T9 212 aa23.93■■□□□ 1.42
SHMT1-202ENST00000352886 CHMP2AO43633 222 aa23.93■■□□□ 1.42
SHMT1-202ENST00000352886 AKAP3O75969 853 aa23.93■■□□□ 1.42
SHMT1-202ENST00000352886 AFPP02771 609 aaKnown RBP23.93■■□□□ 1.42
SHMT1-202ENST00000352886 FAM228BP0C875 321 aa23.93■■□□□ 1.42
SHMT1-202ENST00000352886 XRCC5P13010 732 aaKnown RBP23.93■■□□□ 1.42
SHMT1-202ENST00000352886 BMT2Q1RMZ1 405 aa23.93■■□□□ 1.42
SHMT1-202ENST00000352886 DCAF17Q5H9S7 520 aaPredicted RBP23.93■■□□□ 1.42
SHMT1-202ENST00000352886 CCDC70Q6NSX1 233 aa23.93■■□□□ 1.42
SHMT1-202ENST00000352886 RINT1Q6NUQ1 792 aa23.93■■□□□ 1.42
SHMT1-202ENST00000352886 OTOP1Q7RTM1 612 aa23.93■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms