RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 GHRP10912 638 aa17.41■□□□□ 0.38
HMGA1-202ENST00000347617 EZRP15311 586 aaKnown RBP17.41■□□□□ 0.38
HMGA1-202ENST00000347617 ERCC3P19447 782 aa17.41■□□□□ 0.38
HMGA1-202ENST00000347617 GUCY1A3Q02108 690 aa17.41■□□□□ 0.38
HMGA1-202ENST00000347617 PDE4DQ08499 809 aa17.41■□□□□ 0.38
HMGA1-202ENST00000347617 NFIAQ12857 509 aa17.41■□□□□ 0.38
HMGA1-202ENST00000347617 ORC2Q13416 577 aaPredicted RBP17.41■□□□□ 0.38
HMGA1-202ENST00000347617 FKBP1CQ5VVH2 108 aa17.41■□□□□ 0.38
HMGA1-202ENST00000347617 ANKRD40Q6AI12 368 aa17.41■□□□□ 0.38
HMGA1-202ENST00000347617 SH2D3CQ8N5H7 860 aa17.41■□□□□ 0.38
HMGA1-202ENST00000347617 CCDC114Q96M63 670 aa17.41■□□□□ 0.38
HMGA1-202ENST00000347617 SGIP1Q9BQI5 828 aa17.41■□□□□ 0.38
HMGA1-202ENST00000347617 EPB41L5Q9HCM4 733 aa17.41■□□□□ 0.38
HMGA1-202ENST00000347617 NFU1Q9UMS0 254 aa17.41■□□□□ 0.38
HMGA1-202ENST00000347617 GCOM1H8Y6P7 765 aaPredicted RBP17.4■□□□□ 0.38
HMGA1-202ENST00000347617 KRT14P02533 472 aa17.4■□□□□ 0.38
HMGA1-202ENST00000347617 MYZAPP0CAP1 466 aa17.4■□□□□ 0.38
HMGA1-202ENST00000347617 MYBP10242 640 aa17.4■□□□□ 0.38
HMGA1-202ENST00000347617 CARSP49589 748 aaKnown RBP17.4■□□□□ 0.38
HMGA1-202ENST00000347617 GUCY2DQ02846 1103 aa17.4■□□□□ 0.38
HMGA1-202ENST00000347617 ASTE1Q2TB18 679 aaPredicted RBP17.4■□□□□ 0.38
HMGA1-202ENST00000347617 KCTD16Q68DU8 428 aa17.4■□□□□ 0.38
HMGA1-202ENST00000347617 CENPPQ6IPU0 288 aa17.4■□□□□ 0.38
HMGA1-202ENST00000347617 PDXDC1Q6P996 788 aa17.4■□□□□ 0.38
HMGA1-202ENST00000347617 PAXIP1Q6ZW49 1069 aaPredicted RBP17.4■□□□□ 0.38
HMGA1-202ENST00000347617 KRT26Q7Z3Y9 468 aa17.4■□□□□ 0.38
HMGA1-202ENST00000347617 NIM1KQ8IY84 436 aa17.4■□□□□ 0.38
HMGA1-202ENST00000347617 SMCR8Q8TEV9 937 aaPredicted RBP17.4■□□□□ 0.38
HMGA1-202ENST00000347617 CYFIP2Q96F07 1278 aa17.4■□□□□ 0.38
HMGA1-202ENST00000347617 ISCUQ9H1K1 167 aa17.4■□□□□ 0.38
HMGA1-202ENST00000347617 NDST4Q9H3R1 872 aa17.4■□□□□ 0.38
HMGA1-202ENST00000347617 TAF1DQ9H5J8 278 aaPredicted RBP17.4■□□□□ 0.38
HMGA1-202ENST00000347617 RABEP2Q9H5N1 569 aa17.4■□□□□ 0.38
HMGA1-202ENST00000347617 LTBP3Q9NS15 1303 aa17.4■□□□□ 0.38
HMGA1-202ENST00000347617 CCDC194A0A1B0GVG4 234 aa17.4■□□□□ 0.38
HMGA1-202ENST00000347617 E7EVH7 732 aa17.4■□□□□ 0.38
HMGA1-202ENST00000347617 TTLL1O95922 423 aa17.4■□□□□ 0.38
HMGA1-202ENST00000347617 SNHG28P0DPA3 235 aa17.4■□□□□ 0.38
HMGA1-202ENST00000347617 KLK7P49862 253 aa17.4■□□□□ 0.38
HMGA1-202ENST00000347617 IFT88Q13099 833 aa17.4■□□□□ 0.38
HMGA1-202ENST00000347617 TATDN1Q6P1N9 297 aa17.4■□□□□ 0.38
HMGA1-202ENST00000347617 PARP9Q8IXQ6 854 aa17.4■□□□□ 0.38
HMGA1-202ENST00000347617 OGFOD1Q8N543 542 aa17.4■□□□□ 0.38
HMGA1-202ENST00000347617 BANK1Q8NDB2 785 aa17.4■□□□□ 0.38
HMGA1-202ENST00000347617 SGSM3Q96HU1 749 aa17.4■□□□□ 0.38
HMGA1-202ENST00000347617 ZNF277Q9NRM2 450 aaPredicted RBP17.4■□□□□ 0.38
HMGA1-202ENST00000347617 ATF5Q9Y2D1 282 aaPredicted RBP17.4■□□□□ 0.38
HMGA1-202ENST00000347617 GLI1P08151 1106 aa17.39■□□□□ 0.37
HMGA1-202ENST00000347617 GCFC2P16383 781 aaKnown RBP17.39■□□□□ 0.37
HMGA1-202ENST00000347617 LRRC63Q05C16 580 aa17.39■□□□□ 0.37
HMGA1-202ENST00000347617 CRYMQ14894 314 aa17.39■□□□□ 0.37
HMGA1-202ENST00000347617 ASPRV1Q53RT3 343 aa17.39■□□□□ 0.37
HMGA1-202ENST00000347617 SPDYCQ5MJ68 293 aa17.39■□□□□ 0.37
HMGA1-202ENST00000347617 STAG2Q8N3U4 1231 aa17.39■□□□□ 0.37
HMGA1-202ENST00000347617 MKL1Q969V6 931 aa17.39■□□□□ 0.37
HMGA1-202ENST00000347617 TRIM9Q9C026 710 aa17.39■□□□□ 0.37
HMGA1-202ENST00000347617 ODF2LQ9ULJ1 636 aa17.39■□□□□ 0.37
HMGA1-202ENST00000347617 ADAMTSL1Q8N6G6 1762 aa17.39■□□□□ 0.37
HMGA1-202ENST00000347617 GREB1LQ9C091 1923 aaPredicted RBP17.38■□□□□ 0.37
HMGA1-202ENST00000347617 BRCA1P38398 1863 aaKnown RBP17.38■□□□□ 0.37
HMGA1-202ENST00000347617 ATP8B3O60423 1300 aa17.38■□□□□ 0.37
HMGA1-202ENST00000347617 SPDYE2BA6NHP3 402 aa17.38■□□□□ 0.37
HMGA1-202ENST00000347617 BTNL10A8MVZ5 291 aa17.38■□□□□ 0.37
HMGA1-202ENST00000347617 KLRF2D3W0D1 207 aa17.38■□□□□ 0.37
HMGA1-202ENST00000347617 hCG_1984214I3L0E3 225 aa17.38■□□□□ 0.37
HMGA1-202ENST00000347617 SPDYE6P0CI01 402 aa17.38■□□□□ 0.37
HMGA1-202ENST00000347617 AKR1B1P15121 316 aa17.38■□□□□ 0.37
HMGA1-202ENST00000347617 NAB2Q15742 525 aa17.38■□□□□ 0.37
HMGA1-202ENST00000347617 SLC9C1Q4G0N8 1177 aa17.38■□□□□ 0.37
HMGA1-202ENST00000347617 C10orf76Q5T2E6 689 aa17.38■□□□□ 0.37
HMGA1-202ENST00000347617 MAATS1Q7Z4T9 603 aa17.38■□□□□ 0.37
HMGA1-202ENST00000347617 ZNF713Q8N859 430 aaPredicted RBP17.38■□□□□ 0.37
HMGA1-202ENST00000347617 CASKIN2Q8WXE0 1202 aa17.38■□□□□ 0.37
HMGA1-202ENST00000347617 IFT81Q8WYA0 676 aa17.38■□□□□ 0.37
HMGA1-202ENST00000347617 PBKQ96KB5 322 aa17.38■□□□□ 0.37
HMGA1-202ENST00000347617 CALR3Q96L12 384 aaKnown RBP17.38■□□□□ 0.37
HMGA1-202ENST00000347617 PRMT6Q96LA8 375 aaPredicted RBP17.38■□□□□ 0.37
HMGA1-202ENST00000347617 TMOD2Q9NZR1 351 aa17.38■□□□□ 0.37
HMGA1-202ENST00000347617 PLAAQ9Y263 795 aa17.38■□□□□ 0.37
HMGA1-202ENST00000347617 PCDHGC5Q9Y5F6 944 aa17.38■□□□□ 0.37
HMGA1-202ENST00000347617 PVALEFA0A1B0GWK0 134 aa17.38■□□□□ 0.37
HMGA1-202ENST00000347617 hCG_1642624A0A1W2PR95 340 aa17.38■□□□□ 0.37
HMGA1-202ENST00000347617 TRAPPC3O43617 180 aa17.38■□□□□ 0.37
HMGA1-202ENST00000347617 DNAJC8O75937 253 aaPredicted RBP17.38■□□□□ 0.37
HMGA1-202ENST00000347617 SERPING1P05155 500 aa17.38■□□□□ 0.37
HMGA1-202ENST00000347617 PLEKP08567 350 aaPredicted RBP17.38■□□□□ 0.37
HMGA1-202ENST00000347617 CALRP27797 417 aaKnown RBP17.38■□□□□ 0.37
HMGA1-202ENST00000347617 IFI16Q16666 785 aaKnown RBP17.38■□□□□ 0.37
HMGA1-202ENST00000347617 CABP7Q86V35 215 aa17.38■□□□□ 0.37
HMGA1-202ENST00000347617 ZFPM1Q8IX07 1006 aa17.38■□□□□ 0.37
HMGA1-202ENST00000347617 TAF4BQ92750 862 aa17.38■□□□□ 0.37
HMGA1-202ENST00000347617 LRRC27Q9C0I9 530 aa17.38■□□□□ 0.37
HMGA1-202ENST00000347617 TAOK3Q9H2K8 898 aa17.38■□□□□ 0.37
HMGA1-202ENST00000347617 KDM4CQ9H3R0 1056 aa17.38■□□□□ 0.37
HMGA1-202ENST00000347617 CNOT10Q9H9A5 744 aaKnown RBP17.38■□□□□ 0.37
HMGA1-202ENST00000347617 ATP6V0A4Q9HBG4 840 aa17.38■□□□□ 0.37
HMGA1-202ENST00000347617 SYNPO2Q9UMS6 1093 aa17.38■□□□□ 0.37
HMGA1-202ENST00000347617 FER1L6Q2WGJ9 1857 aa17.37■□□□□ 0.37
HMGA1-202ENST00000347617 A0A1B0GUA9 196 aa17.37■□□□□ 0.37
HMGA1-202ENST00000347617 ASIC1P78348 528 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms