RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 PUS3Q9BZE2 481 aaKnown RBP3.84□□□□□ -1.8
SYNE1-201ENST00000341594 C12orf65Q9H3J6 166 aaKnown RBP3.84□□□□□ -1.8
SYNE1-201ENST00000341594 ANKARQ7Z5J8 1434 aa3.84□□□□□ -1.8
SYNE1-201ENST00000341594 TP53INP1Q96A56 240 aa3.84□□□□□ -1.8
SYNE1-201ENST00000341594 FBXO9Q9UK97 447 aaPredicted RBP3.84□□□□□ -1.8
SYNE1-201ENST00000341594 COL15A1P39059 1388 aa3.84□□□□□ -1.8
SYNE1-201ENST00000341594 MARSP56192 900 aaKnown RBP3.84□□□□□ -1.8
SYNE1-201ENST00000341594 ARFGEF1Q9Y6D6 1849 aa3.84□□□□□ -1.8
SYNE1-201ENST00000341594 FTCDO95954 541 aa3.84□□□□□ -1.8
SYNE1-201ENST00000341594 DRC3Q9H069 523 aa3.84□□□□□ -1.8
SYNE1-201ENST00000341594 ZBTB3Q9H5J0 574 aa3.84□□□□□ -1.8
SYNE1-201ENST00000341594 FAF1Q9UNN5 650 aaPredicted RBP3.84□□□□□ -1.8
SYNE1-201ENST00000341594 HOXA2O43364 376 aa3.84□□□□□ -1.8
SYNE1-201ENST00000341594 SLC18A1P54219 525 aa3.84□□□□□ -1.8
SYNE1-201ENST00000341594 MTMR2Q13614 643 aa3.84□□□□□ -1.8
SYNE1-201ENST00000341594 ARHGAP44Q17R89 818 aa3.84□□□□□ -1.8
SYNE1-201ENST00000341594 TWISTNBQ3B726 338 aaPredicted RBP3.84□□□□□ -1.8
SYNE1-201ENST00000341594 TEKT1Q969V4 418 aa3.84□□□□□ -1.8
SYNE1-201ENST00000341594 TRIM11Q96F44 468 aa3.84□□□□□ -1.8
SYNE1-201ENST00000341594 NOVA2Q9UNW9 492 aaKnown RBP3.84□□□□□ -1.8
SYNE1-201ENST00000341594 CTNND2Q9UQB3 1225 aa3.84□□□□□ -1.8
SYNE1-201ENST00000341594 PALM2-AKAP2B1ALY0 433 aaPredicted RBP3.83□□□□□ -1.8
SYNE1-201ENST00000341594 ABL1P00519 1130 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 SAFBQ15424 915 aaKnown RBP eCLIP3.83□□□□□ -1.8
SYNE1-201ENST00000341594 CNNM3Q8NE01 707 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 AIDAQ96BJ3 306 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 HEMGNQ9BXL5 484 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 ADAMTSL3P82987 1691 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 UNCXA6NJT0 531 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 CHMP2BQ9UQN3 213 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 ZBTB7BO15156 539 aaPredicted RBP3.83□□□□□ -1.8
SYNE1-201ENST00000341594 TIMM44O43615 452 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 USO1O60763 962 aaKnown RBP3.83□□□□□ -1.8
SYNE1-201ENST00000341594 C17orf50Q8WW18 174 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 ZNF274Q96GC6 653 aaPredicted RBP3.83□□□□□ -1.8
SYNE1-201ENST00000341594 STRNO43815 780 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 NDUFA5Q16718 116 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 BBOF1Q8ND07 529 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 INO80BQ9C086 356 aaPredicted RBP3.83□□□□□ -1.8
SYNE1-201ENST00000341594 ABCB11O95342 1321 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 PSEN1P49768 467 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 C11orf91Q3C1V1 193 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 ZSCAN29Q8IWY8 852 aaPredicted RBP3.83□□□□□ -1.8
SYNE1-201ENST00000341594 SMARCC2Q8TAQ2 1214 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 XPO4Q9C0E2 1151 aaKnown RBP3.83□□□□□ -1.8
SYNE1-201ENST00000341594 TRIM39Q9HCM9 518 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 RASSF7Q02833 373 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 PDE4DQ08499 809 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 ACBD5Q5T8D3 534 aaPredicted RBP3.83□□□□□ -1.8
SYNE1-201ENST00000341594 KIAA1522Q9P206 1035 aaPredicted RBP3.83□□□□□ -1.8
SYNE1-201ENST00000341594 MAP2K7O14733 419 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 ZNF211Q13398 564 aaPredicted RBP3.83□□□□□ -1.8
SYNE1-201ENST00000341594 RTN1Q16799 776 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 ZNF444Q8N0Y2 327 aaPredicted RBP3.83□□□□□ -1.8
SYNE1-201ENST00000341594 TRIM58Q8NG06 486 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 KATNAL1Q9BW62 490 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 CCDC78A2IDD5 438 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 UBTFL1P0CB47 393 aaPredicted RBP3.83□□□□□ -1.8
SYNE1-201ENST00000341594 LARP7Q4G0J3 582 aaKnown RBP eCLIP3.83□□□□□ -1.8
SYNE1-201ENST00000341594 SYNJ2BP-COX16A0A087WUM0 186 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 NSRP1Q9H0G5 558 aaKnown RBP3.83□□□□□ -1.8
SYNE1-201ENST00000341594 COX16Q9P0S2 106 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 KRT17Q04695 432 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 TRAF3IP1Q8TDR0 691 aaPredicted RBP3.83□□□□□ -1.8
SYNE1-201ENST00000341594 TESPA1A2RU30 521 aaPredicted RBP3.83□□□□□ -1.8
SYNE1-201ENST00000341594 STXBP3O00186 592 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 GALNT17Q6IS24 598 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 KLHL23Q8NBE8 558 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 SYN2Q92777 582 aaPredicted RBP3.83□□□□□ -1.8
SYNE1-201ENST00000341594 APBB2Q92870 758 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 CCPG1Q9ULG6 757 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 CUEDC2Q9H467 287 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 FAM86B2P0C5J1 330 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 GCFC2P16383 781 aaKnown RBP3.83□□□□□ -1.8
SYNE1-201ENST00000341594 AK2P54819 239 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 LBRQ14739 615 aaKnown RBP3.83□□□□□ -1.8
SYNE1-201ENST00000341594 RAB3IPQ96QF0 476 aaPredicted RBP3.83□□□□□ -1.8
SYNE1-201ENST00000341594 BAG1Q99933 345 aaPredicted RBP3.83□□□□□ -1.8
SYNE1-201ENST00000341594 MMADHCQ9H3L0 296 aaPredicted RBP3.83□□□□□ -1.8
SYNE1-201ENST00000341594 C6orf203Q9P0P8 240 aaPredicted RBP3.83□□□□□ -1.8
SYNE1-201ENST00000341594 PACSIN2Q9UNF0 486 aaPredicted RBP3.83□□□□□ -1.8
SYNE1-201ENST00000341594 ABCC4O15439 1325 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 KRT5P13647 590 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 TCP1P17987 556 aaKnown RBP3.83□□□□□ -1.8
SYNE1-201ENST00000341594 SRLQ86TD4 932 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 CD302Q8IX05 232 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 MSL3P1P0C860 447 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 PNMA1Q8ND90 353 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 DNAJB8Q8NHS0 232 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 COG3Q96JB2 828 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 DDX23Q9BUQ8 820 aaKnown RBP3.83□□□□□ -1.8
SYNE1-201ENST00000341594 POLR2DO15514 142 aaKnown RBP3.83□□□□□ -1.8
SYNE1-201ENST00000341594 INAQ16352 499 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 AKIRIN2Q53H80 203 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 EIF3CQ99613 913 aaKnown RBP3.83□□□□□ -1.8
SYNE1-201ENST00000341594 MEFVO15553 781 aaPredicted RBP3.83□□□□□ -1.8
SYNE1-201ENST00000341594 HOXC8P31273 242 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 LACTBP83111 547 aaPredicted RBP3.83□□□□□ -1.8
SYNE1-201ENST00000341594 PDIA5Q14554 519 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 ZNF398Q8TD17 642 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms