RNA–Protein interactions for RNA: ENST00000324238.6

CRLF3-201, Transcript of cytokine receptor like factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CRLF3, Length 2,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRLF3-201ENST00000324238 IL1R1P14778 569 aa21.78■■□□□ 1.08
CRLF3-201ENST00000324238 FLT3P36888 993 aa21.78■■□□□ 1.08
CRLF3-201ENST00000324238 ERVK-9P63128 1117 aa21.78■■□□□ 1.08
CRLF3-201ENST00000324238 ZNF543Q08ER8 600 aa21.78■■□□□ 1.08
CRLF3-201ENST00000324238 SEMA3FQ13275 785 aa21.78■■□□□ 1.08
CRLF3-201ENST00000324238 PRR16Q569H4 304 aa21.78■■□□□ 1.08
CRLF3-201ENST00000324238 KSR1Q8IVT5 923 aa21.78■■□□□ 1.08
CRLF3-201ENST00000324238 CUL5Q93034 780 aa21.78■■□□□ 1.08
CRLF3-201ENST00000324238 P2RX7Q99572 595 aaKnown RBP21.78■■□□□ 1.08
CRLF3-201ENST00000324238 LRRC4CQ9HCJ2 640 aa21.78■■□□□ 1.08
CRLF3-201ENST00000324238 PLAAQ9Y263 795 aa21.78■■□□□ 1.08
CRLF3-201ENST00000324238 PNMA6FA0A0J9YX94 578 aa21.78■■□□□ 1.08
CRLF3-201ENST00000324238 ESYT2A0FGR8 921 aa21.78■■□□□ 1.08
CRLF3-201ENST00000324238 ERLIN2O94905 339 aa21.78■■□□□ 1.08
CRLF3-201ENST00000324238 TRIM37O94972 964 aa21.78■■□□□ 1.08
CRLF3-201ENST00000324238 MYBP10242 640 aa21.78■■□□□ 1.08
CRLF3-201ENST00000324238 PLCG2P16885 1265 aa21.78■■□□□ 1.08
CRLF3-201ENST00000324238 COPB2P35606 906 aa21.78■■□□□ 1.08
CRLF3-201ENST00000324238 ITIH3Q06033 890 aa21.78■■□□□ 1.08
CRLF3-201ENST00000324238 ALS2CLQ60I27 953 aa21.78■■□□□ 1.08
CRLF3-201ENST00000324238 RNF10Q8N5U6 811 aaKnown RBP21.78■■□□□ 1.08
CRLF3-201ENST00000324238 CAVIN3Q969G5 261 aa21.78■■□□□ 1.08
CRLF3-201ENST00000324238 NEUROG2Q9H2A3 272 aa21.78■■□□□ 1.08
CRLF3-201ENST00000324238 HDAC9Q9UKV0 1011 aa21.78■■□□□ 1.08
CRLF3-201ENST00000324238 PCDHA2Q9Y5H9 948 aa21.78■■□□□ 1.08
CRLF3-201ENST00000324238 POLD1P28340 1107 aa21.77■■□□□ 1.08
CRLF3-201ENST00000324238 PAK2Q13177 524 aa21.77■■□□□ 1.08
CRLF3-201ENST00000324238 CCDC65Q8IXS2 484 aa21.77■■□□□ 1.08
CRLF3-201ENST00000324238 KCTD10Q9H3F6 313 aa21.77■■□□□ 1.08
CRLF3-201ENST00000324238 PPANQ9NQ55 473 aaKnown RBP21.77■■□□□ 1.08
CRLF3-201ENST00000324238 RPS6KA1Q15418 735 aa21.77■■□□□ 1.08
CRLF3-201ENST00000324238 EFCAB13Q8IY85 973 aa21.77■■□□□ 1.08
CRLF3-201ENST00000324238 TAF4BQ92750 862 aa21.77■■□□□ 1.08
CRLF3-201ENST00000324238 DDX60LQ5H9U9 1706 aaKnown RBP21.77■■□□□ 1.07
CRLF3-201ENST00000324238 MSL1Q68DK7 614 aa21.76■■□□□ 1.07
CRLF3-201ENST00000324238 SFR1Q86XK3 245 aa21.76■■□□□ 1.07
CRLF3-201ENST00000324238 CYP2W1Q8TAV3 490 aa21.76■■□□□ 1.07
CRLF3-201ENST00000324238 RBM46Q8TBY0 533 aaKnown RBP21.76■■□□□ 1.07
CRLF3-201ENST00000324238 GANQ9H2C0 597 aa21.76■■□□□ 1.07
CRLF3-201ENST00000324238 A0A087WUV0 522 aaPredicted RBP21.76■■□□□ 1.07
CRLF3-201ENST00000324238 PSMD2Q13200 908 aa21.76■■□□□ 1.07
CRLF3-201ENST00000324238 CELF4Q9BZC1 486 aaKnown RBP21.76■■□□□ 1.07
CRLF3-201ENST00000324238 PCDHB13Q9Y5F0 798 aa21.76■■□□□ 1.07
CRLF3-201ENST00000324238 GDF11O95390 407 aa21.75■■□□□ 1.07
CRLF3-201ENST00000324238 TTLL1O95922 423 aa21.75■■□□□ 1.07
CRLF3-201ENST00000324238 ASPRV1Q53RT3 343 aa21.75■■□□□ 1.07
CRLF3-201ENST00000324238 USP38Q8NB14 1042 aa21.75■■□□□ 1.07
CRLF3-201ENST00000324238 PCDHA1Q9Y5I3 950 aa21.75■■□□□ 1.07
CRLF3-201ENST00000324238 COL5A3P25940 1745 aaPredicted RBP21.75■■□□□ 1.07
CRLF3-201ENST00000324238 RBAK-RBAKDNI3L0D1 243 aa21.75■■□□□ 1.07
CRLF3-201ENST00000324238 MYO1FO00160 1098 aa21.75■■□□□ 1.07
CRLF3-201ENST00000324238 NR1D1P20393 614 aa21.75■■□□□ 1.07
CRLF3-201ENST00000324238 LSP1P33241 339 aa21.75■■□□□ 1.07
CRLF3-201ENST00000324238 MRPL12P52815 198 aaKnown RBP21.75■■□□□ 1.07
CRLF3-201ENST00000324238 CDC37Q16543 378 aaPredicted RBP21.75■■□□□ 1.07
CRLF3-201ENST00000324238 CHADLQ6NUI6 762 aa21.75■■□□□ 1.07
CRLF3-201ENST00000324238 SEPT12Q8IYM1 358 aa21.75■■□□□ 1.07
CRLF3-201ENST00000324238 AMACRQ9UHK6 382 aa21.75■■□□□ 1.07
CRLF3-201ENST00000324238 AHDC1Q5TGY3 1603 aaPredicted RBP21.75■■□□□ 1.07
CRLF3-201ENST00000324238 WNK3Q9BYP7 1800 aa21.75■■□□□ 1.07
CRLF3-201ENST00000324238 CETN3O15182 167 aa21.75■■□□□ 1.07
CRLF3-201ENST00000324238 HOXD13P35453 343 aa21.75■■□□□ 1.07
CRLF3-201ENST00000324238 RNF187Q5TA31 235 aaPredicted RBP21.75■■□□□ 1.07
CRLF3-201ENST00000324238 IRF2BP2Q7Z5L9 587 aa21.75■■□□□ 1.07
CRLF3-201ENST00000324238 SPICE1Q8N0Z3 855 aa21.75■■□□□ 1.07
CRLF3-201ENST00000324238 PROM2Q8N271 834 aa21.75■■□□□ 1.07
CRLF3-201ENST00000324238 IQCDQ96DY2 449 aa21.75■■□□□ 1.07
CRLF3-201ENST00000324238 DPH5Q9H2P9 285 aa21.75■■□□□ 1.07
CRLF3-201ENST00000324238 RREB1Q92766 1687 aa21.74■■□□□ 1.07
CRLF3-201ENST00000324238 ZBTB39O15060 712 aa21.74■■□□□ 1.07
CRLF3-201ENST00000324238 UCHL3P15374 230 aa21.74■■□□□ 1.07
CRLF3-201ENST00000324238 TMOD1P28289 359 aa21.74■■□□□ 1.07
CRLF3-201ENST00000324238 INPP5BP32019 993 aa21.74■■□□□ 1.07
CRLF3-201ENST00000324238 GTF2A1P52655 376 aaPredicted RBP21.74■■□□□ 1.07
CRLF3-201ENST00000324238 QRICH1Q2TAL8 776 aa21.74■■□□□ 1.07
CRLF3-201ENST00000324238 CATSPER3Q86XQ3 398 aa21.74■■□□□ 1.07
CRLF3-201ENST00000324238 UTP3Q9NQZ2 479 aaKnown RBP eCLIP21.74■■□□□ 1.079e-10■■■■■ 115.4
CRLF3-201ENST00000324238 PCDHGC5Q9Y5F6 944 aa21.74■■□□□ 1.07
CRLF3-201ENST00000324238 NRAPQ86VF7 1730 aa21.74■■□□□ 1.07
CRLF3-201ENST00000324238 PPEF1O14829 653 aaPredicted RBP21.74■■□□□ 1.07
CRLF3-201ENST00000324238 AKAP3O75969 853 aa21.74■■□□□ 1.07
CRLF3-201ENST00000324238 IBSPP21815 317 aaPredicted RBP21.74■■□□□ 1.07
CRLF3-201ENST00000324238 SHMT1P34896 483 aa21.74■■□□□ 1.07
CRLF3-201ENST00000324238 PPP4R3AQ6IN85 833 aa21.74■■□□□ 1.07
CRLF3-201ENST00000324238 CDC42EP5Q6NZY7 148 aa21.74■■□□□ 1.07
CRLF3-201ENST00000324238 CAPN7Q9Y6W3 813 aa21.74■■□□□ 1.07
CRLF3-201ENST00000324238 HOXA13P31271 388 aaPredicted RBP21.73■■□□□ 1.07
CRLF3-201ENST00000324238 HDLBPQ00341 1268 aaKnown RBP21.73■■□□□ 1.07
CRLF3-201ENST00000324238 ALKBH5Q6P6C2 394 aaKnown RBP21.73■■□□□ 1.07
CRLF3-201ENST00000324238 METTL13Q8N6R0 699 aa21.73■■□□□ 1.07
CRLF3-201ENST00000324238 REEP2Q9BRK0 252 aa21.73■■□□□ 1.07
CRLF3-201ENST00000324238 ARMCX3Q9UH62 379 aaPredicted RBP21.73■■□□□ 1.07
CRLF3-201ENST00000324238 NR2E1Q9Y466 385 aa21.73■■□□□ 1.07
CRLF3-201ENST00000324238 NAV1Q8NEY1 1877 aa21.73■■□□□ 1.07
CRLF3-201ENST00000324238 ZBTB5O15062 677 aa21.73■■□□□ 1.07
CRLF3-201ENST00000324238 ICE2Q659A1 982 aa21.73■■□□□ 1.07
CRLF3-201ENST00000324238 ZNF622Q969S3 477 aaKnown RBP eCLIP21.73■■□□□ 1.071e-6■■□□□ 11.5
CRLF3-201ENST00000324238 DCDC2CA8MYV0 355 aa21.72■■□□□ 1.07
CRLF3-201ENST00000324238 E7EVH7 732 aa21.72■■□□□ 1.07
CRLF3-201ENST00000324238 DAPK3O43293 454 aa21.72■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms