RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 KLC4Q9NSK0 619 aa14.89□□□□□ -0.03
CSPG4-201ENST00000308508 TRAF3IP3Q9Y228 551 aa14.89□□□□□ -0.03
CSPG4-201ENST00000308508 NDUFB9Q9Y6M9 179 aa14.89□□□□□ -0.03
CSPG4-201ENST00000308508 hCG_2014768A0A024R1R8 64 aa14.89□□□□□ -0.03
CSPG4-201ENST00000308508 SOX5P35711 763 aa14.89□□□□□ -0.03
CSPG4-201ENST00000308508 TBCCQ15814 346 aa14.89□□□□□ -0.03
CSPG4-201ENST00000308508 ACCSQ96QU6 501 aa14.89□□□□□ -0.03
CSPG4-201ENST00000308508 IRAK4Q9NWZ3 460 aa14.89□□□□□ -0.03
CSPG4-201ENST00000308508 GFPT2O94808 682 aa14.89□□□□□ -0.03
CSPG4-201ENST00000308508 ZBED1O96006 694 aa14.89□□□□□ -0.03
CSPG4-201ENST00000308508 IGBP1P78318 339 aa14.89□□□□□ -0.03
CSPG4-201ENST00000308508 AP1B1Q10567 949 aa14.89□□□□□ -0.03
CSPG4-201ENST00000308508 RSRC2Q7L4I2 434 aaKnown RBP14.89□□□□□ -0.03
CSPG4-201ENST00000308508 GINM1Q9NU53 330 aa14.89□□□□□ -0.03
CSPG4-201ENST00000308508 ARHGEF12Q9NZN5 1544 aa14.89□□□□□ -0.03
CSPG4-201ENST00000308508 ADD1P35611 737 aaKnown RBP14.88□□□□□ -0.03
CSPG4-201ENST00000308508 GGCXP38435 758 aa14.88□□□□□ -0.03
CSPG4-201ENST00000308508 PPP2R2AP63151 447 aa14.88□□□□□ -0.03
CSPG4-201ENST00000308508 FBXO11Q86XK2 927 aa14.88□□□□□ -0.03
CSPG4-201ENST00000308508 PLA2G4DQ86XP0 818 aa14.88□□□□□ -0.03
CSPG4-201ENST00000308508 ATP11BQ9Y2G3 1177 aa14.88□□□□□ -0.03
CSPG4-201ENST00000308508 TNKSO95271 1327 aa14.88□□□□□ -0.03
CSPG4-201ENST00000308508 RAD23BP54727 409 aa14.88□□□□□ -0.03
CSPG4-201ENST00000308508 TRIP13Q15645 432 aaPredicted RBP14.88□□□□□ -0.03
CSPG4-201ENST00000308508 BBS9Q3SYG4 887 aa14.88□□□□□ -0.03
CSPG4-201ENST00000308508 EYA1Q99502 592 aa14.88□□□□□ -0.03
CSPG4-201ENST00000308508 LCMT1Q9UIC8 334 aa14.88□□□□□ -0.03
CSPG4-201ENST00000308508 PDIA3P30101 505 aaKnown RBP14.88□□□□□ -0.03
CSPG4-201ENST00000308508 ARL4CP56559 192 aa14.88□□□□□ -0.03
CSPG4-201ENST00000308508 FRA10AC1Q70Z53 315 aa14.88□□□□□ -0.03
CSPG4-201ENST00000308508 CDC26Q8NHZ8 85 aa14.88□□□□□ -0.03
CSPG4-201ENST00000308508 BTBD6Q96KE9 485 aa14.88□□□□□ -0.03
CSPG4-201ENST00000308508 STXBP3O00186 592 aa14.88□□□□□ -0.03
CSPG4-201ENST00000308508 GNPATO15228 680 aa14.88□□□□□ -0.03
CSPG4-201ENST00000308508 FOSP01100 380 aaPredicted RBP14.88□□□□□ -0.03
CSPG4-201ENST00000308508 PSMD2Q13200 908 aa14.88□□□□□ -0.03
CSPG4-201ENST00000308508 STX19Q8N4C7 294 aa14.88□□□□□ -0.03
CSPG4-201ENST00000308508 BATF3Q9NR55 127 aa14.88□□□□□ -0.03
CSPG4-201ENST00000308508 CTIFO43310 598 aaKnown RBP14.88□□□□□ -0.03
CSPG4-201ENST00000308508 HAUS5O94927 633 aa14.88□□□□□ -0.03
CSPG4-201ENST00000308508 PDE6BP35913 854 aa14.88□□□□□ -0.03
CSPG4-201ENST00000308508 GPKOWQ92917 476 aaPredicted RBP eCLIP14.88□□□□□ -0.03
CSPG4-201ENST00000308508 NRBP2Q9NSY0 501 aa14.88□□□□□ -0.03
CSPG4-201ENST00000308508 UGGT2Q9NYU1 1516 aa14.88□□□□□ -0.03
CSPG4-201ENST00000308508 THOC2Q8NI27 1593 aaKnown RBP14.88□□□□□ -0.03
CSPG4-201ENST00000308508 A0A0D9SFI3 127 aa14.88□□□□□ -0.03
CSPG4-201ENST00000308508 EFTUD2Q15029 972 aaKnown RBP eCLIP14.88□□□□□ -0.03
CSPG4-201ENST00000308508 EEF2KMTQ96G04 330 aa14.88□□□□□ -0.03
CSPG4-201ENST00000308508 AS3MTQ9HBK9 375 aa14.88□□□□□ -0.03
CSPG4-201ENST00000308508 FANCAO15360 1455 aa14.88□□□□□ -0.03
CSPG4-201ENST00000308508 KLHL38Q2WGJ6 581 aa14.87□□□□□ -0.03
CSPG4-201ENST00000308508 PATL1Q86TB9 770 aaKnown RBP14.87□□□□□ -0.03
CSPG4-201ENST00000308508 KCNV2Q8TDN2 545 aa14.87□□□□□ -0.03
CSPG4-201ENST00000308508 SNX25Q9H3E2 840 aa14.87□□□□□ -0.03
CSPG4-201ENST00000308508 ZNF212Q9UDV6 495 aa14.87□□□□□ -0.03
CSPG4-201ENST00000308508 COPS2P61201 443 aa14.87□□□□□ -0.03
CSPG4-201ENST00000308508 PTH1RQ03431 593 aa14.87□□□□□ -0.03
CSPG4-201ENST00000308508 MYO1EQ12965 1108 aa14.87□□□□□ -0.03
CSPG4-201ENST00000308508 TEX9Q8N6V9 391 aa14.87□□□□□ -0.03
CSPG4-201ENST00000308508 FAM167BQ9BTA0 163 aa14.87□□□□□ -0.03
CSPG4-201ENST00000308508 MAGED2Q9UNF1 606 aaPredicted RBP14.87□□□□□ -0.03
CSPG4-201ENST00000308508 DDIT3P35638 169 aa14.87□□□□□ -0.03
CSPG4-201ENST00000308508 GRIN1Q05586 938 aa14.87□□□□□ -0.03
CSPG4-201ENST00000308508 SNX19Q92543 992 aa14.87□□□□□ -0.03
CSPG4-201ENST00000308508 GRAMD1AQ96CP6 724 aa14.87□□□□□ -0.03
CSPG4-201ENST00000308508 UBE2TQ9NPD8 197 aaPredicted RBP14.87□□□□□ -0.03
CSPG4-201ENST00000308508 TBC1D23Q9NUY8 699 aa14.87□□□□□ -0.03
CSPG4-201ENST00000308508 GJA3Q9Y6H8 435 aa14.87□□□□□ -0.03
CSPG4-201ENST00000308508 A0A1W2PP64 1363 aa14.87□□□□□ -0.03
CSPG4-201ENST00000308508 WBP4O75554 376 aaKnown RBP14.87□□□□□ -0.03
CSPG4-201ENST00000308508 ESRRBO95718 433 aa14.87□□□□□ -0.03
CSPG4-201ENST00000308508 FGGP02679 453 aa14.87□□□□□ -0.03
CSPG4-201ENST00000308508 TMCC1O94876 653 aa14.87□□□□□ -0.03
CSPG4-201ENST00000308508 BRD2P25440 801 aaKnown RBP14.87□□□□□ -0.03
CSPG4-201ENST00000308508 RYBPQ8N488 228 aaPredicted RBP14.87□□□□□ -0.03
CSPG4-201ENST00000308508 TGS1Q96RS0 853 aaKnown RBP14.87□□□□□ -0.03
CSPG4-201ENST00000308508 SUGCTQ9HAC7 445 aa14.87□□□□□ -0.03
CSPG4-201ENST00000308508 PPP4R3CPQ6ZMV5 832 aa14.87□□□□□ -0.03
CSPG4-201ENST00000308508 USP19O94966 1318 aa14.87□□□□□ -0.03
CSPG4-201ENST00000308508 MAGOHP61326 146 aaKnown RBP14.87□□□□□ -0.03
CSPG4-201ENST00000308508 CNGA3Q16281 694 aa14.87□□□□□ -0.03
CSPG4-201ENST00000308508 DPP8Q6V1X1 898 aaPredicted RBP14.87□□□□□ -0.03
CSPG4-201ENST00000308508 DTNBO60941 627 aa14.86□□□□□ -0.03
CSPG4-201ENST00000308508 SAYSD1Q9NPB0 183 aa14.86□□□□□ -0.03
CSPG4-201ENST00000308508 PCDHA4Q9UN74 947 aa14.86□□□□□ -0.03
CSPG4-201ENST00000308508 USP17L12C9JPN9 530 aa14.86□□□□□ -0.03
CSPG4-201ENST00000308508 USP17L21D6R901 530 aa14.86□□□□□ -0.03
CSPG4-201ENST00000308508 GOLGA8SH3BPF8 625 aa14.86□□□□□ -0.03
CSPG4-201ENST00000308508 PAPOLAP51003 745 aaKnown RBP14.86□□□□□ -0.03
CSPG4-201ENST00000308508 ARHGEF25Q86VW2 580 aa14.86□□□□□ -0.03
CSPG4-201ENST00000308508 EXOC8Q8IYI6 725 aa14.86□□□□□ -0.03
CSPG4-201ENST00000308508 FAM161BQ96MY7 647 aa14.86□□□□□ -0.03
CSPG4-201ENST00000308508 ADA2Q9NZK5 511 aa14.86□□□□□ -0.03
CSPG4-201ENST00000308508 SLC4A1P02730 911 aa14.86□□□□□ -0.03
CSPG4-201ENST00000308508 DDX42Q86XP3 938 aaKnown RBP eCLIP14.86□□□□□ -0.03
CSPG4-201ENST00000308508 SMYD4Q8IYR2 804 aaPredicted RBP14.86□□□□□ -0.03
CSPG4-201ENST00000308508 RNF26Q9BY78 433 aaPredicted RBP14.86□□□□□ -0.03
CSPG4-201ENST00000308508 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.86□□□□□ -0.03
CSPG4-201ENST00000308508 ATP8B3O60423 1300 aa14.86□□□□□ -0.03
CSPG4-201ENST00000308508 FMNL1O95466 1100 aaPredicted RBP14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms