RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 FNTAP49354 379 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 ADKP55263 362 aaKnown RBP5.64□□□□□ -1.51
SCN1A-201ENST00000303395 HSP90AA4PQ58FG1 418 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 WASHC2DQ5SRD0 308 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 KCNK9Q9NPC2 374 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 CHCHD3Q9NX63 227 aaKnown RBP5.64□□□□□ -1.51
SCN1A-201ENST00000303395 APOBEC2Q9Y235 224 aaKnown RBP5.64□□□□□ -1.51
SCN1A-201ENST00000303395 NUB1Q9Y5A7 615 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 CDHR2Q9BYE9 1310 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 TMEM247A6NEH6 219 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 MAN1A2O60476 641 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 RHOXF2BP0C7M4 288 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 ENPEPQ07075 957 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 KYAT1Q16773 422 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 RHOXF2Q9BQY4 288 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 PAGR1Q9BTK6 254 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 CARD9Q9H257 536 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 SLC4A7Q9Y6M7 1214 aa5.64□□□□□ -1.51
SCN1A-201ENST00000303395 C16orf96A6NNT2 1141 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 CYTH3O43739 400 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 DNAJB2P25686 324 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 EPS8Q12929 822 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 TRIM28Q13263 835 aaKnown RBP5.63□□□□□ -1.51
SCN1A-201ENST00000303395 RARS2Q5T160 578 aaKnown RBP5.63□□□□□ -1.51
SCN1A-201ENST00000303395 RASIP1Q5U651 963 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 ELMSAN1Q6PJG2 1045 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 CCDC17Q96LX7 622 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 TRIM62Q9BVG3 475 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 OLA1Q9NTK5 396 aaKnown RBP5.63□□□□□ -1.51
SCN1A-201ENST00000303395 BAIAP2L1Q9UHR4 511 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 KRIT1O00522 736 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 ECEL1O95672 775 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 KCNA4P22459 653 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 PRKAA2P54646 552 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 NUP107P57740 925 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 KIF23Q02241 960 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-201ENST00000303395 N4BP2L2Q92802 583 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-201ENST00000303395 INPP5DQ92835 1189 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 P2RX5Q93086 422 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 MAGED4Q96JG8 741 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 CATSPER2Q96P56 530 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 CARD14Q9BXL6 1004 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 TMOD3Q9NYL9 352 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 ADGRG1Q9Y653 693 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 MAD1L1Q9Y6D9 718 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 CCDC162PA2VCL2 907 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 CTNND1O60716 968 aaKnown RBP5.63□□□□□ -1.51
SCN1A-201ENST00000303395 KRT4P19013 534 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 GJC1P36383 396 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 MDM2Q00987 491 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-201ENST00000303395 IDI1Q13907 227 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 TSC22D1Q15714 1073 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 HADHQ16836 314 aaKnown RBP5.63□□□□□ -1.51
SCN1A-201ENST00000303395 CCDC93Q567U6 631 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 NEK8Q86SG6 692 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 NSUN7Q8NE18 718 aaKnown RBP5.63□□□□□ -1.51
SCN1A-201ENST00000303395 TBC1D23Q9NUY8 699 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 LRCH1Q9Y2L9 728 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 MINDY4BA8MYZ0 360 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 IGF2BP3O00425 579 aaKnown RBP eCLIP5.63□□□□□ -1.51
SCN1A-201ENST00000303395 TAF5LO75529 589 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 CALB2P22676 271 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 RASGRF1Q13972 1273 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 ASPRV1Q53RT3 343 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 CCDC25Q86WR0 208 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 WDR60Q8WVS4 1066 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 WWP1Q9H0M0 922 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 UVRAGQ9P2Y5 699 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 ZMYND8Q9ULU4 1186 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-201ENST00000303395 TSPY2A6NKD2 308 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 ARHGEF9O43307 516 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 PFDN1O60925 122 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 S100BP04271 92 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-201ENST00000303395 SERPINB2P05120 415 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 PSMA3P25788 255 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 FAM180AQ6UWF9 173 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 TMTC3Q6ZXV5 915 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 TRMT1LQ7Z2T5 733 aaKnown RBP5.63□□□□□ -1.51
SCN1A-201ENST00000303395 C16orf62Q7Z3J2 963 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 KCNK16Q96T55 309 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 CCSER1Q9C0I3 900 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 NSMCE4AQ9NXX6 385 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 SMARCAL1Q9NZC9 954 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 STRIP2Q9ULQ0 834 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 GOLGA8RI6L899 631 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 TXNDC9O14530 226 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 XPO1O14980 1071 aaKnown RBP5.63□□□□□ -1.51
SCN1A-201ENST00000303395 SPOPO43791 374 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 FKBP6O75344 327 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 HEXIM1O94992 359 aaKnown RBP5.63□□□□□ -1.51
SCN1A-201ENST00000303395 TTC4O95801 387 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 SLC4A1P02730 911 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 SESN3P58005 492 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 IRX5P78411 483 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-201ENST00000303395 IQCB1Q15051 598 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 ME3Q16798 604 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 COBLL1Q53SF7 1204 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 COL23A1Q86Y22 540 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-201ENST00000303395 TNIP2Q8NFZ5 429 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 ERGIC2Q96RQ1 377 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms