RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 BACE1P56817 501 aa14.91□□□□□ -0.02
LDLR-201ENST00000252444 PPATQ06203 517 aa14.91□□□□□ -0.02
LDLR-201ENST00000252444 BCL2L12Q9HB09 334 aa14.91□□□□□ -0.02
LDLR-201ENST00000252444 IPO5O00410 1097 aaKnown RBP14.91□□□□□ -0.02
LDLR-201ENST00000252444 CALCOCO2Q13137 446 aa14.91□□□□□ -0.02
LDLR-201ENST00000252444 TAF1CQ15572 869 aaPredicted RBP14.91□□□□□ -0.02
LDLR-201ENST00000252444 ZNF746Q6NUN9 644 aaPredicted RBP14.91□□□□□ -0.02
LDLR-201ENST00000252444 DGAT1O75907 488 aa14.91□□□□□ -0.02
LDLR-201ENST00000252444 HMGCS2P54868 508 aa14.91□□□□□ -0.02
LDLR-201ENST00000252444 HLTFQ14527 1009 aaKnown RBP eCLIP14.91□□□□□ -0.02
LDLR-201ENST00000252444 TUBGCP2Q9BSJ2 902 aa14.91□□□□□ -0.02
LDLR-201ENST00000252444 RPF1Q9H9Y2 349 aaKnown RBP14.91□□□□□ -0.02
LDLR-201ENST00000252444 JPH1Q9HDC5 661 aaPredicted RBP14.91□□□□□ -0.02
LDLR-201ENST00000252444 STIM2Q9P246 746 aa14.91□□□□□ -0.02
LDLR-201ENST00000252444 RNF14Q9UBS8 474 aa14.91□□□□□ -0.02
LDLR-201ENST00000252444 RGS2P41220 211 aa14.91□□□□□ -0.02
LDLR-201ENST00000252444 ANTXR2P58335 489 aa14.91□□□□□ -0.02
LDLR-201ENST00000252444 LONRF3Q496Y0 759 aa14.91□□□□□ -0.02
LDLR-201ENST00000252444 ZNF771Q7L3S4 317 aaPredicted RBP14.91□□□□□ -0.02
LDLR-201ENST00000252444 SUGCTQ9HAC7 445 aa14.91□□□□□ -0.02
LDLR-201ENST00000252444 DONSONQ9NYP3 566 aa14.91□□□□□ -0.02
LDLR-201ENST00000252444 SSX2IPQ9Y2D8 614 aa14.91□□□□□ -0.02
LDLR-201ENST00000252444 LAMC2Q13753 1193 aa14.9□□□□□ -0.02
LDLR-201ENST00000252444 BBOF1Q8ND07 529 aa14.9□□□□□ -0.02
LDLR-201ENST00000252444 GCOM2Q9BZD3 368 aaPredicted RBP14.9□□□□□ -0.02
LDLR-201ENST00000252444 DNAI1Q9UI46 699 aa14.9□□□□□ -0.02
LDLR-201ENST00000252444 SNAP23O00161 211 aa14.9□□□□□ -0.02
LDLR-201ENST00000252444 HSPA6P17066 643 aa14.9□□□□□ -0.02
LDLR-201ENST00000252444 TBXAS1P24557 533 aaPredicted RBP14.9□□□□□ -0.02
LDLR-201ENST00000252444 MICALCLQ6ZW33 695 aa14.9□□□□□ -0.02
LDLR-201ENST00000252444 LRP10Q7Z4F1 713 aa14.9□□□□□ -0.02
LDLR-201ENST00000252444 CCDC50Q8IVM0 306 aa14.9□□□□□ -0.02
LDLR-201ENST00000252444 RASGRP4Q8TDF6 673 aa14.9□□□□□ -0.02
LDLR-201ENST00000252444 PPP1R9BQ96SB3 815 aa14.9□□□□□ -0.02
LDLR-201ENST00000252444 GPBP1L1Q9HC44 474 aaPredicted RBP14.9□□□□□ -0.02
LDLR-201ENST00000252444 EIF3DO15371 548 aaKnown RBP eCLIP14.9□□□□□ -0.02
LDLR-201ENST00000252444 PTGS1P23219 599 aa14.9□□□□□ -0.02
LDLR-201ENST00000252444 MAPK6Q16659 721 aa14.9□□□□□ -0.02
LDLR-201ENST00000252444 WHAMMP3Q1A5X7 153 aa14.9□□□□□ -0.02
LDLR-201ENST00000252444 LTBP3Q9NS15 1303 aa14.9□□□□□ -0.02
LDLR-201ENST00000252444 COL16A1Q07092 1604 aaPredicted RBP14.9□□□□□ -0.02
LDLR-201ENST00000252444 KRT19P08727 400 aa14.9□□□□□ -0.02
LDLR-201ENST00000252444 DCUN1D2Q6PH85 259 aa14.9□□□□□ -0.02
LDLR-201ENST00000252444 PADI6Q6TGC4 694 aa14.9□□□□□ -0.02
LDLR-201ENST00000252444 SCFD2Q8WU76 684 aa14.9□□□□□ -0.02
LDLR-201ENST00000252444 NLRP7Q8WX94 980 aa14.9□□□□□ -0.02
LDLR-201ENST00000252444 KIAA0754O94854 1291 aa14.9□□□□□ -0.02
LDLR-201ENST00000252444 MKL1Q969V6 931 aa14.9□□□□□ -0.02
LDLR-201ENST00000252444 SLC39A2Q9NP94 309 aa14.9□□□□□ -0.02
LDLR-201ENST00000252444 DIS3Q9Y2L1 958 aaKnown RBP14.9□□□□□ -0.02
LDLR-201ENST00000252444 K7ERI5 159 aa14.89□□□□□ -0.03
LDLR-201ENST00000252444 TNPO2O14787 897 aaKnown RBP14.89□□□□□ -0.03
LDLR-201ENST00000252444 CYP4A11Q02928 519 aa14.89□□□□□ -0.03
LDLR-201ENST00000252444 KMT5BQ4FZB7 885 aa14.89□□□□□ -0.03
LDLR-201ENST00000252444 ZNF569Q5MCW4 686 aa14.89□□□□□ -0.03
LDLR-201ENST00000252444 C7orf25Q9BPX7 421 aa14.89□□□□□ -0.03
LDLR-201ENST00000252444 MXRA8Q9BRK3 442 aa14.89□□□□□ -0.03
LDLR-201ENST00000252444 MRPL4Q9BYD3 311 aaKnown RBP14.89□□□□□ -0.03
LDLR-201ENST00000252444 GBA2Q9HCG7 927 aaPredicted RBP14.89□□□□□ -0.03
LDLR-201ENST00000252444 CTTNBP2NLQ9P2B4 639 aa14.89□□□□□ -0.03
LDLR-201ENST00000252444 MAD2L2Q9UI95 211 aa14.89□□□□□ -0.03
LDLR-201ENST00000252444 ROBO3Q96MS0 1386 aa14.89□□□□□ -0.03
LDLR-201ENST00000252444 MACROD2A1Z1Q3 448 aa14.89□□□□□ -0.03
LDLR-201ENST00000252444 GPT2Q8TD30 523 aa14.89□□□□□ -0.03
LDLR-201ENST00000252444 GUCA1BQ9UMX6 200 aa14.89□□□□□ -0.03
LDLR-201ENST00000252444 CCL15-CCL14A0A0B4J2E2 113 aa14.89□□□□□ -0.03
LDLR-201ENST00000252444 CPT1AP50416 773 aa14.89□□□□□ -0.03
LDLR-201ENST00000252444 ZNF157P51786 506 aaPredicted RBP14.89□□□□□ -0.03
LDLR-201ENST00000252444 LMNB2Q03252 620 aa14.89□□□□□ -0.03
LDLR-201ENST00000252444 CCL15Q16663 113 aa14.89□□□□□ -0.03
LDLR-201ENST00000252444 PANX2Q96RD6 677 aa14.89□□□□□ -0.03
LDLR-201ENST00000252444 JMJD4Q9H9V9 463 aa14.89□□□□□ -0.03
LDLR-201ENST00000252444 IVLP07476 585 aa14.89□□□□□ -0.03
LDLR-201ENST00000252444 SKIP12755 728 aa14.89□□□□□ -0.03
LDLR-201ENST00000252444 MCM6Q14566 821 aa14.89□□□□□ -0.03
LDLR-201ENST00000252444 ARMCX2Q7L311 632 aa14.89□□□□□ -0.03
LDLR-201ENST00000252444 XPO4Q9C0E2 1151 aaKnown RBP14.89□□□□□ -0.03
LDLR-201ENST00000252444 RIOX1Q9H6W3 641 aa14.89□□□□□ -0.03
LDLR-201ENST00000252444 AMFRQ9UKV5 643 aa14.89□□□□□ -0.03
LDLR-201ENST00000252444 AGTPBP1Q9UPW5 1226 aa14.89□□□□□ -0.03
LDLR-201ENST00000252444 STRNO43815 780 aa14.88□□□□□ -0.03
LDLR-201ENST00000252444 PPIL2Q13356 520 aa14.88□□□□□ -0.03
LDLR-201ENST00000252444 CFAP58Q5T655 872 aa14.88□□□□□ -0.03
LDLR-201ENST00000252444 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.88□□□□□ -0.03
LDLR-201ENST00000252444 SEPT1Q8WYJ6 367 aa14.88□□□□□ -0.03
LDLR-201ENST00000252444 CAMKK2Q96RR4 588 aa14.88□□□□□ -0.03
LDLR-201ENST00000252444 IFIH1Q9BYX4 1025 aaKnown RBP14.88□□□□□ -0.03
LDLR-201ENST00000252444 PPP1R9AQ9ULJ8 1098 aa14.88□□□□□ -0.03
LDLR-201ENST00000252444 ZBED6P86452 979 aa14.88□□□□□ -0.03
LDLR-201ENST00000252444 MTERF2Q49AM1 385 aa14.88□□□□□ -0.03
LDLR-201ENST00000252444 Q4G0T1 1027 aa14.88□□□□□ -0.03
LDLR-201ENST00000252444 ARFGAP2Q8N6H7 521 aa14.88□□□□□ -0.03
LDLR-201ENST00000252444 URGCPQ8TCY9 931 aa14.88□□□□□ -0.03
LDLR-201ENST00000252444 ERO1AQ96HE7 468 aa14.88□□□□□ -0.03
LDLR-201ENST00000252444 NUDT12Q9BQG2 462 aa14.88□□□□□ -0.03
LDLR-201ENST00000252444 MTIF3Q9H2K0 278 aaKnown RBP14.88□□□□□ -0.03
LDLR-201ENST00000252444 MRPL47Q9HD33 250 aaKnown RBP14.88□□□□□ -0.03
LDLR-201ENST00000252444 HOXA13P31271 388 aaPredicted RBP14.88□□□□□ -0.03
LDLR-201ENST00000252444 GSTA5Q7RTV2 222 aa14.88□□□□□ -0.03
LDLR-201ENST00000252444 PLCH1Q4KWH8 1693 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms