RNA–Protein interactions for RNA: YHR170W

NMD3, Transcript of Protein involved in nuclear export of the large ribosomal subunit, yeast

Gene NMD3, Length 1,557 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NMD3	YHR170W	EMI1	Q04406	187 aa		4.4	□□□□□ -1.71
NMD3	YHR170W	SNO4	Q04902	237 aa		4.4	□□□□□ -1.71
NMD3	YHR170W	HBT1	Q07653	1046 aa	Known RBP	4.4	□□□□□ -1.71
NMD3	YHR170W	BUD7	Q08754	746 aa		4.4	□□□□□ -1.71
NMD3	YHR170W	HSP33	Q08914	237 aa	Known RBP	4.4	□□□□□ -1.71
NMD3	YHR170W	HSP32	Q08992	237 aa		4.4	□□□□□ -1.71
NMD3	YHR170W	RPL24A	P04449	155 aa	Known RBP	4.39	□□□□□ -1.71
NMD3	YHR170W	ARG3	P05150	338 aa		4.39	□□□□□ -1.71
NMD3	YHR170W	DST1	P07273	309 aa		4.39	□□□□□ -1.71
NMD3	YHR170W	ARD1	P07347	238 aa	Predicted RBP	4.39	□□□□□ -1.71
NMD3	YHR170W	YAR066W	P0CX18	203 aa		4.39	□□□□□ -1.71
NMD3	YHR170W	YHR214W	P0CX19	203 aa		4.39	□□□□□ -1.71
NMD3	YHR170W	RNA1	P11745	407 aa	Known RBP	4.39	□□□□□ -1.71
NMD3	YHR170W	EPT1	P22140	391 aa		4.39	□□□□□ -1.71
NMD3	YHR170W	ERG6	P25087	383 aa	Known RBP	4.39	□□□□□ -1.71
NMD3	YHR170W	RFA2	P26754	273 aa	Known RBP	4.39	□□□□□ -1.71
NMD3	YHR170W	YHR112C	P38716	378 aa		4.39	□□□□□ -1.71
NMD3	YHR170W	DBP8	P38719	431 aa		4.39	□□□□□ -1.71
NMD3	YHR170W	CYC2	P38909	366 aa		4.39	□□□□□ -1.71
NMD3	YHR170W	SWD1	P39706	426 aa		4.39	□□□□□ -1.71
NMD3	YHR170W	OSW5	P40219	148 aa		4.39	□□□□□ -1.71
NMD3	YHR170W	ALG5	P40350	334 aa		4.39	□□□□□ -1.71
NMD3	YHR170W	MAM33	P40513	266 aa		4.39	□□□□□ -1.71
NMD3	YHR170W	ARF3	P40994	183 aa	RIP-Chip data	4.39	□□□□□ -1.71	not detected
NMD3	YHR170W	NUP84	P52891	726 aa		4.39	□□□□□ -1.71
NMD3	YHR170W	SHY1	P53266	389 aa		4.39	□□□□□ -1.71
NMD3	YHR170W	TEX1	P53851	422 aa	Known RBP	4.39	□□□□□ -1.71
NMD3	YHR170W	PRO2	P54885	456 aa	Known RBP	4.39	□□□□□ -1.71
NMD3	YHR170W	ARG5,6	Q01217	863 aa		4.39	□□□□□ -1.71
NMD3	YHR170W	NRG1	Q03125	231 aa		4.39	□□□□□ -1.71
NMD3	YHR170W	RAD34	Q06665	692 aa		4.39	□□□□□ -1.71
NMD3	YHR170W	ASA1	Q06822	443 aa		4.39	□□□□□ -1.71
NMD3	YHR170W	YOL019W	Q08157	551 aa		4.39	□□□□□ -1.71
NMD3	YHR170W	RRP36	Q12481	300 aa	Predicted RBP	4.39	□□□□□ -1.71
NMD3	YHR170W	SPT3	P06844	337 aa		4.38	□□□□□ -1.71
NMD3	YHR170W	CPA1	P07258	411 aa	Known RBP	4.38	□□□□□ -1.71
NMD3	YHR170W	CCA1	P21269	546 aa		4.38	□□□□□ -1.71
NMD3	YHR170W	DBR1	P24309	405 aa	Known RBP	4.38	□□□□□ -1.71
NMD3	YHR170W	ZIP1	P31111	875 aa		4.38	□□□□□ -1.71
NMD3	YHR170W	ERG3	P32353	365 aa		4.38	□□□□□ -1.71
NMD3	YHR170W	RPT5	P33297	434 aa	Known RBP	4.38	□□□□□ -1.71
NMD3	YHR170W	GMH1	P36125	273 aa		4.38	□□□□□ -1.71
NMD3	YHR170W	SOL2	P37262	315 aa		4.38	□□□□□ -1.71
NMD3	YHR170W	IML3	P38265	245 aa		4.38	□□□□□ -1.71
NMD3	YHR170W	ARN1	P38731	627 aa		4.38	□□□□□ -1.71
NMD3	YHR170W	NPT1	P39683	429 aa	Known RBP	4.38	□□□□□ -1.71
NMD3	YHR170W	GID8	P40208	455 aa		4.38	□□□□□ -1.71
NMD3	YHR170W	MIG2	P53035	382 aa		4.38	□□□□□ -1.71
NMD3	YHR170W	SMA1	Q02651	245 aa		4.38	□□□□□ -1.71
NMD3	YHR170W	YMR111C	Q04461	462 aa	Predicted RBP	4.38	□□□□□ -1.71
NMD3	YHR170W	HEL2	Q05580	639 aa	Known RBP	4.38	□□□□□ -1.71
NMD3	YHR170W	BCP1	Q06338	283 aa		4.38	□□□□□ -1.71
NMD3	YHR170W	NSE1	Q07913	336 aa		4.38	□□□□□ -1.71
NMD3	YHR170W	SGT1	Q08446	395 aa		4.38	□□□□□ -1.71
NMD3	YHR170W	SNX3	Q08826	162 aa	Known RBP	4.38	□□□□□ -1.71
NMD3	YHR170W	AHA1	Q12449	350 aa	Known RBP	4.38	□□□□□ -1.71
NMD3	YHR170W	HXK2	P04807	486 aa	Known RBP	4.37	□□□□□ -1.71
NMD3	YHR170W	ARG81	P05085	880 aa		4.37	□□□□□ -1.71
NMD3	YHR170W	ERG4	P25340	473 aa		4.37	□□□□□ -1.71
NMD3	YHR170W	HXT4	P32467	576 aa		4.37	□□□□□ -1.71
NMD3	YHR170W	MDL1	P33310	695 aa		4.37	□□□□□ -1.71
NMD3	YHR170W	HES1	P35843	434 aa		4.37	□□□□□ -1.71
NMD3	YHR170W	RRF1	P38771	230 aa		4.37	□□□□□ -1.71
NMD3	YHR170W	YHR218W	P38899	603 aa		4.37	□□□□□ -1.71
NMD3	YHR170W	BEM4	P39011	633 aa		4.37	□□□□□ -1.71
NMD3	YHR170W	YJL068C	P40363	299 aa		4.37	□□□□□ -1.71
NMD3	YHR170W	GCD10	P41814	478 aa		4.37	□□□□□ -1.71
NMD3	YHR170W	MEP2	P41948	499 aa		4.37	□□□□□ -1.71
NMD3	YHR170W	MUP1	P50276	574 aa		4.37	□□□□□ -1.71
NMD3	YHR170W	TDA7	P53882	636 aa	Predicted RBP	4.37	□□□□□ -1.71
NMD3	YHR170W	YLR040C	Q07988	224 aa		4.37	□□□□□ -1.71
NMD3	YHR170W	YPL245W	Q12179	454 aa	Known RBP	4.37	□□□□□ -1.71
NMD3	YHR170W	YOR012W	Q12351	137 aa		4.37	□□□□□ -1.71
NMD3	YHR170W	YMR084W	A2P2R3	262 aa		4.36	□□□□□ -1.71
NMD3	YHR170W	CET1	O13297	549 aa	Predicted RBP	4.36	□□□□□ -1.71
NMD3	YHR170W	TUB1	P09733	447 aa	Known RBP	4.36	□□□□□ -1.71
NMD3	YHR170W	CDC26	P14724	124 aa		4.36	□□□□□ -1.71
NMD3	YHR170W	CIN8	P27895	1000 aa		4.36	□□□□□ -1.71
NMD3	YHR170W	DPH5	P32469	300 aa	Predicted RBP	4.36	□□□□□ -1.71
NMD3	YHR170W	RML2	P32611	393 aa		4.36	□□□□□ -1.71
NMD3	YHR170W	RPS1A	P33442	255 aa	Known RBP	4.36	□□□□□ -1.71
NMD3	YHR170W	TEF4	P36008	412 aa	Known RBP	4.36	□□□□□ -1.71
NMD3	YHR170W	MRPL36	P36531	177 aa		4.36	□□□□□ -1.71
NMD3	YHR170W	PDX3	P38075	228 aa	Known RBP	4.36	□□□□□ -1.71
NMD3	YHR170W	LTP1	P40347	161 aa		4.36	□□□□□ -1.71
NMD3	YHR170W	CCT7	P42943	550 aa	Known RBP	4.36	□□□□□ -1.71
NMD3	YHR170W	IRC5	P43610	853 aa		4.36	□□□□□ -1.71
NMD3	YHR170W	ILM1	P47155	203 aa		4.36	□□□□□ -1.71
NMD3	YHR170W	HMO1	Q03973	246 aa	Known RBP	4.36	□□□□□ -1.71
NMD3	YHR170W	DYN3	Q04949	312 aa		4.36	□□□□□ -1.71
NMD3	YHR170W	RGC1	Q06108	1083 aa	Known RBP	4.36	□□□□□ -1.71
NMD3	YHR170W	ATG26	Q06321	1198 aa		4.36	□□□□□ -1.71
NMD3	YHR170W	ATG34	Q12292	412 aa		4.36	□□□□□ -1.71
NMD3	YHR170W	JLP1	Q12358	412 aa		4.36	□□□□□ -1.71
NMD3	YHR170W	GTT2	Q12390	233 aa		4.36	□□□□□ -1.71
NMD3	YHR170W	PAR32	Q12515	295 aa	Known RBP	4.36	□□□□□ -1.71
NMD3	YHR170W	YKL018C-A	Q3E7A7	99 aa		4.36	□□□□□ -1.71
NMD3	YHR170W	NAG1	Q8TGN9	163 aa		4.36	□□□□□ -1.71
NMD3	YHR170W	SRN2	Q99176	213 aa		4.36	□□□□□ -1.71
NMD3	YHR170W	ATP2	P00830	511 aa	Known RBP	4.36	□□□□□ -1.71

Retrieved 100 of 5,963 RNA–protein pairs in 277 ms