RNA–Protein interactions for RNA: YHR012W

VPS29, Transcript of Subunit of the membrane-associated retromer complex, yeastyeast

Gene VPS29, Length 849 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS29YHR012W PRS5Q12265 496 aaKnown RBP4.54□□□□□ -1.68
VPS29YHR012W ATG34Q12292 412 aa4.54□□□□□ -1.68
VPS29YHR012W RHO2P06781 192 aa4.53□□□□□ -1.68
VPS29YHR012W COS2P0CX12 379 aa4.53□□□□□ -1.68
VPS29YHR012W COS3P0CX13 379 aa4.53□□□□□ -1.68
VPS29YHR012W ERG8P24521 451 aa4.53□□□□□ -1.68
VPS29YHR012W CWH43P25618 953 aa4.53□□□□□ -1.68
VPS29YHR012W MSN2P33748 704 aa4.53□□□□□ -1.68
VPS29YHR012W SPO23P33757 523 aa4.53□□□□□ -1.68
VPS29YHR012W VPS51P36116 164 aa4.53□□□□□ -1.68
VPS29YHR012W MNN2P38069 597 aa4.53□□□□□ -1.68
VPS29YHR012W LIN1P38852 340 aaPredicted RBP4.53□□□□□ -1.68
VPS29YHR012W CIN4P39110 191 aa4.53□□□□□ -1.68
VPS29YHR012W YEL057CP39983 233 aa4.53□□□□□ -1.68
VPS29YHR012W COS4P43542 379 aa4.53□□□□□ -1.68
VPS29YHR012W ALB1P47019 175 aaPredicted RBP4.53□□□□□ -1.68
VPS29YHR012W EMC2P47133 292 aaKnown RBP4.53□□□□□ -1.68
VPS29YHR012W YJR141WP47172 347 aaPredicted RBP4.53□□□□□ -1.68
VPS29YHR012W GTO1P48239 356 aa4.53□□□□□ -1.68
VPS29YHR012W PDR16P53860 351 aaKnown RBP4.53□□□□□ -1.68
VPS29YHR012W REC102Q02721 264 aa4.53□□□□□ -1.68
VPS29YHR012W SKI8Q02793 397 aaPredicted RBP4.53□□□□□ -1.68
VPS29YHR012W YDR541CQ03049 344 aa4.53□□□□□ -1.68
VPS29YHR012W CGI121Q03705 181 aaKnown RBP4.53□□□□□ -1.68
VPS29YHR012W TDA5Q06417 326 aaKnown RBP4.53□□□□□ -1.68
VPS29YHR012W YPR091CQ06833 770 aa4.53□□□□□ -1.68
VPS29YHR012W GPN2Q08726 347 aaPredicted RBP4.53□□□□□ -1.68
VPS29YHR012W YKL033W-AQ86ZR7 236 aa4.53□□□□□ -1.68
VPS29YHR012W YOR019WQ99248 730 aa4.53□□□□□ -1.68
VPS29YHR012W SSA3P09435 649 aaKnown RBP4.52□□□□□ -1.69
VPS29YHR012W YSF3P0C074 85 aaPredicted RBP4.52□□□□□ -1.69
VPS29YHR012W SRV2P17555 526 aaKnown RBP4.52□□□□□ -1.69
VPS29YHR012W CTS1P29029 562 aa4.52□□□□□ -1.69
VPS29YHR012W LHS1P36016 881 aa4.52□□□□□ -1.69
VPS29YHR012W SPC42P36094 363 aa4.52□□□□□ -1.69
VPS29YHR012W HSM3P38348 480 aa4.52□□□□□ -1.69
VPS29YHR012W TRR2P38816 342 aa4.52□□□□□ -1.69
VPS29YHR012W ARB1P40024 610 aaKnown RBP4.52□□□□□ -1.69
VPS29YHR012W UTP25P40498 721 aaKnown RBP4.52□□□□□ -1.69
VPS29YHR012W PSA1P41940 361 aaKnown RBP4.52□□□□□ -1.69
VPS29YHR012W FMP32P43557 207 aa4.52□□□□□ -1.69
VPS29YHR012W UPF3P48412 387 aaKnown RBP4.52□□□□□ -1.69
VPS29YHR012W NAS6P50086 228 aa4.52□□□□□ -1.69
VPS29YHR012W ATP22P50273 684 aaPredicted RBP4.52□□□□□ -1.69
VPS29YHR012W MAL11P53048 616 aa4.52□□□□□ -1.69
VPS29YHR012W YGR067CP53243 804 aa4.52□□□□□ -1.69
VPS29YHR012W YGR079WP53249 370 aa4.52□□□□□ -1.69
VPS29YHR012W RNH70P53331 553 aa4.52□□□□□ -1.69
VPS29YHR012W IDP3P53982 420 aaKnown RBP4.52□□□□□ -1.69
VPS29YHR012W YLR460CP54007 376 aa4.52□□□□□ -1.69
VPS29YHR012W YPL068CQ02749 293 aa4.52□□□□□ -1.69
VPS29YHR012W EFR3Q03653 782 aaKnown RBP4.52□□□□□ -1.69
VPS29YHR012W ECM11Q04110 302 aa4.52□□□□□ -1.69
VPS29YHR012W MRX10Q05648 414 aa4.52□□□□□ -1.69
VPS29YHR012W GMC2Q06201 188 aa4.52□□□□□ -1.69
VPS29YHR012W YLR446WQ06204 433 aa4.52□□□□□ -1.69
VPS29YHR012W UAF30Q08747 228 aa4.52□□□□□ -1.69
VPS29YHR012W YOR365CQ08844 703 aa4.52□□□□□ -1.69
VPS29YHR012W FDH1Q08911 376 aa4.52□□□□□ -1.69
VPS29YHR012W RPN5Q12250 445 aaKnown RBP4.52□□□□□ -1.69
VPS29YHR012W SPE4Q12455 300 aa4.52□□□□□ -1.69
VPS29YHR012W MDM12Q92328 271 aa4.52□□□□□ -1.69
VPS29YHR012W OCA4P25366 362 aa4.51□□□□□ -1.69
VPS29YHR012W ARE1P25628 610 aa4.51□□□□□ -1.69
VPS29YHR012W BUB2P26448 306 aaPredicted RBP4.51□□□□□ -1.69
VPS29YHR012W AAR2P32357 355 aaPredicted RBP4.51□□□□□ -1.69
VPS29YHR012W SSO1P32867 290 aa4.51□□□□□ -1.69
VPS29YHR012W LOS1P33418 1100 aaPredicted RBP4.51□□□□□ -1.69
VPS29YHR012W SNU114P36048 1008 aaKnown RBP4.51□□□□□ -1.69
VPS29YHR012W COS111P38308 924 aa4.51□□□□□ -1.69
VPS29YHR012W HRB1P38922 454 aaKnown RBP RIP-Chip data4.51□□□□□ -1.69not detected
VPS29YHR012W TAT2P38967 592 aa4.51□□□□□ -1.69
VPS29YHR012W YEN1P40028 759 aa4.51□□□□□ -1.69
VPS29YHR012W SHR5P41912 237 aa4.51□□□□□ -1.69
VPS29YHR012W ECO1P43605 281 aa4.51□□□□□ -1.69
VPS29YHR012W MTR3P48240 250 aaPredicted RBP4.51□□□□□ -1.69
VPS29YHR012W RPS12P48589 143 aaKnown RBP4.51□□□□□ -1.69
VPS29YHR012W ARI1P53111 347 aaKnown RBP4.51□□□□□ -1.69
VPS29YHR012W PFA5Q03289 374 aa4.51□□□□□ -1.69
VPS29YHR012W TY1A-DR2Q03964 440 aaKnown RBP4.51□□□□□ -1.69
VPS29YHR012W YMR111CQ04461 462 aaPredicted RBP4.51□□□□□ -1.69
VPS29YHR012W STE23Q06010 1027 aa4.51□□□□□ -1.69
VPS29YHR012W APC9Q12107 265 aa4.51□□□□□ -1.69
VPS29YHR012W YKL068W-AQ3E826 78 aa4.51□□□□□ -1.69
VPS29YHR012W ATP4P05626 244 aa4.5□□□□□ -1.69
VPS29YHR012W RPB5P20434 215 aa4.5□□□□□ -1.69
VPS29YHR012W SYP1P25623 870 aaKnown RBP4.5□□□□□ -1.69
VPS29YHR012W IDH2P28241 369 aaKnown RBP4.5□□□□□ -1.69
VPS29YHR012W NAB2P32505 525 aaKnown RBP RIP-Chip data4.5□□□□□ -1.69not detected
VPS29YHR012W YKR078WP36158 585 aaKnown RBP4.5□□□□□ -1.69
VPS29YHR012W BZZ1P38822 633 aa4.5□□□□□ -1.69
VPS29YHR012W TDA11P38854 504 aa4.5□□□□□ -1.69
VPS29YHR012W SOK1P40317 901 aa4.5□□□□□ -1.69
VPS29YHR012W PKP1P40530 394 aa4.5□□□□□ -1.69
VPS29YHR012W CIN1P40987 1014 aa4.5□□□□□ -1.69
VPS29YHR012W SEC26P41810 973 aaKnown RBP4.5□□□□□ -1.69
VPS29YHR012W MEP2P41948 499 aa4.5□□□□□ -1.69
VPS29YHR012W SNO3P43544 222 aa4.5□□□□□ -1.69
VPS29YHR012W MNN5P46982 586 aa4.5□□□□□ -1.69
VPS29YHR012W HOS2P53096 452 aaPredicted RBP4.5□□□□□ -1.69
Retrieved 100 of 5,963 RNA–protein pairs in 13.1 ms