RNA–Protein interactions for RNA: ENST00000640653.1

VEGFA-232, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,170 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-232ENST00000640653 EMSYQ7Z589 1322 aa28.78■■■□□ 2.2
VEGFA-232ENST00000640653 TREHO43280 583 aa28.78■■■□□ 2.2
VEGFA-232ENST00000640653 PDIA3P30101 505 aaKnown RBP28.78■■■□□ 2.2
VEGFA-232ENST00000640653 MCTP2Q6DN12 878 aa28.78■■■□□ 2.2
VEGFA-232ENST00000640653 TRAF7Q6Q0C0 670 aa28.78■■■□□ 2.2
VEGFA-232ENST00000640653 PHKBQ93100 1093 aa28.78■■■□□ 2.2
VEGFA-232ENST00000640653 GAS2L1Q99501 681 aaPredicted RBP28.78■■■□□ 2.2
VEGFA-232ENST00000640653 RNF26Q9BY78 433 aaPredicted RBP28.78■■■□□ 2.2
VEGFA-232ENST00000640653 ZMYND12Q9H0C1 365 aa28.78■■■□□ 2.2
VEGFA-232ENST00000640653 JPH1Q9HDC5 661 aaPredicted RBP28.78■■■□□ 2.2
VEGFA-232ENST00000640653 SETD4Q9NVD3 440 aa28.78■■■□□ 2.2
VEGFA-232ENST00000640653 CDH23Q9H251 3354 aa28.77■■■□□ 2.2
VEGFA-232ENST00000640653 GSTTP1A0A1W2PQM5 241 aa28.77■■■□□ 2.2
VEGFA-232ENST00000640653 CAND2O75155 1236 aa28.77■■■□□ 2.2
VEGFA-232ENST00000640653 ZNF76P36508 570 aa28.77■■■□□ 2.2
VEGFA-232ENST00000640653 PKN1Q16512 942 aa28.77■■■□□ 2.2
VEGFA-232ENST00000640653 PPP2R2DQ66LE6 453 aa28.77■■■□□ 2.2
VEGFA-232ENST00000640653 SDF4Q9BRK5 362 aa28.77■■■□□ 2.2
VEGFA-232ENST00000640653 ERAP1Q9NZ08 941 aa28.77■■■□□ 2.2
VEGFA-232ENST00000640653 SLC9A2Q9UBY0 812 aa28.77■■■□□ 2.2
VEGFA-232ENST00000640653 NFASCO94856 1347 aa28.76■■■□□ 2.19
VEGFA-232ENST00000640653 NRCAMQ92823 1304 aa28.76■■■□□ 2.19
VEGFA-232ENST00000640653 RSPH10B2B2RC85 870 aa28.76■■■□□ 2.19
VEGFA-232ENST00000640653 KIF28PB7ZC32 967 aa28.76■■■□□ 2.19
VEGFA-232ENST00000640653 RSPH10BP0C881 870 aa28.76■■■□□ 2.19
VEGFA-232ENST00000640653 IFNAR1P17181 557 aa28.76■■■□□ 2.19
VEGFA-232ENST00000640653 GNA11P29992 359 aa28.76■■■□□ 2.19
VEGFA-232ENST00000640653 CCT2P78371 535 aaKnown RBP28.76■■■□□ 2.19
VEGFA-232ENST00000640653 ARHGAP4P98171 946 aa28.76■■■□□ 2.19
VEGFA-232ENST00000640653 TOB2Q14106 344 aaPredicted RBP28.76■■■□□ 2.19
VEGFA-232ENST00000640653 NTRK3Q16288 839 aa28.76■■■□□ 2.19
VEGFA-232ENST00000640653 JAKMIP3Q5VZ66 844 aa28.76■■■□□ 2.19
VEGFA-232ENST00000640653 CYP2W1Q8TAV3 490 aa28.76■■■□□ 2.19
VEGFA-232ENST00000640653 GLG1Q92896 1179 aa28.76■■■□□ 2.19
VEGFA-232ENST00000640653 SLC26A6Q9BXS9 759 aa28.76■■■□□ 2.19
VEGFA-232ENST00000640653 SMARCAD1Q9H4L7 1026 aa28.76■■■□□ 2.19
VEGFA-232ENST00000640653 PRDM12Q9H4Q4 367 aa28.76■■■□□ 2.19
VEGFA-232ENST00000640653 ABHD14A-ACY1A0A1B0GW23 586 aa28.75■■■□□ 2.19
VEGFA-232ENST00000640653 EFCAB14O75071 495 aa28.75■■■□□ 2.19
VEGFA-232ENST00000640653 CENPBP07199 599 aaPredicted RBP28.75■■■□□ 2.19
VEGFA-232ENST00000640653 MYOGP15173 224 aa28.75■■■□□ 2.19
VEGFA-232ENST00000640653 WDR5P61964 334 aaKnown RBP28.75■■■□□ 2.19
VEGFA-232ENST00000640653 HERC6Q8IVU3 1022 aa28.75■■■□□ 2.19
VEGFA-232ENST00000640653 REXO1Q8N1G1 1221 aaKnown RBP28.75■■■□□ 2.19
VEGFA-232ENST00000640653 CCDC148Q8NFR7 591 aa28.75■■■□□ 2.19
VEGFA-232ENST00000640653 LMBR1Q8WVP7 490 aa28.75■■■□□ 2.19
VEGFA-232ENST00000640653 GBF1Q92538 1859 aa28.74■■■□□ 2.19
VEGFA-232ENST00000640653 MEIS1O00470 390 aa28.74■■■□□ 2.19
VEGFA-232ENST00000640653 LGR5O75473 907 aa28.74■■■□□ 2.19
VEGFA-232ENST00000640653 ARP10275 920 aa28.74■■■□□ 2.19
VEGFA-232ENST00000640653 IKBKEQ14164 716 aa28.74■■■□□ 2.19
VEGFA-232ENST00000640653 NIPA1Q7RTP0 329 aa28.74■■■□□ 2.19
VEGFA-232ENST00000640653 BICD2Q8TD16 824 aa28.74■■■□□ 2.19
VEGFA-232ENST00000640653 NCOA5Q9HCD5 579 aaKnown RBP28.74■■■□□ 2.19
VEGFA-232ENST00000640653 AGO4Q9HCK5 861 aaKnown RBP28.74■■■□□ 2.19
VEGFA-232ENST00000640653 MARK3P27448 753 aa28.73■■■□□ 2.19
VEGFA-232ENST00000640653 ADAM17P78536 824 aa28.73■■■□□ 2.19
VEGFA-232ENST00000640653 MBTPS1Q14703 1052 aa28.73■■■□□ 2.19
VEGFA-232ENST00000640653 ZNF274Q96GC6 653 aaPredicted RBP28.73■■■□□ 2.19
VEGFA-232ENST00000640653 UPF3BQ9BZI7 483 aaKnown RBP28.73■■■□□ 2.19
VEGFA-232ENST00000640653 AZI2Q9H6S1 392 aa28.73■■■□□ 2.19
VEGFA-232ENST00000640653 CA3P07451 260 aa28.72■■■□□ 2.19
VEGFA-232ENST00000640653 PPFIA1Q13136 1202 aa28.72■■■□□ 2.19
VEGFA-232ENST00000640653 PHF6Q8IWS0 365 aaKnown RBP eCLIP28.72■■■□□ 2.193e-13■■□□□ 13.7
VEGFA-232ENST00000640653 TRIM22Q8IYM9 498 aa28.72■■■□□ 2.19
VEGFA-232ENST00000640653 TET1Q8NFU7 2136 aa28.72■■■□□ 2.19
VEGFA-232ENST00000640653 PPFIA3O75145 1194 aa28.71■■■□□ 2.19
VEGFA-232ENST00000640653 CYP3A4P08684 503 aa28.71■■■□□ 2.19
VEGFA-232ENST00000640653 PDRG1Q9NUG6 133 aa28.71■■■□□ 2.19
VEGFA-232ENST00000640653 CPLX1O14810 134 aa28.7■■■□□ 2.18
VEGFA-232ENST00000640653 TLL1O43897 1013 aa28.7■■■□□ 2.18
VEGFA-232ENST00000640653 CTSHP09668 335 aa28.7■■■□□ 2.18
VEGFA-232ENST00000640653 ACTR2P61160 394 aa28.7■■■□□ 2.18
VEGFA-232ENST00000640653 SSRP1Q08945 709 aaKnown RBP28.7■■■□□ 2.18
VEGFA-232ENST00000640653 ITGB3BPQ13352 177 aaPredicted RBP28.7■■■□□ 2.18
VEGFA-232ENST00000640653 GRIK4Q16099 956 aa28.7■■■□□ 2.18
VEGFA-232ENST00000640653 TAF2Q6P1X5 1199 aa28.7■■■□□ 2.18
VEGFA-232ENST00000640653 PLA2G4DQ86XP0 818 aa28.7■■■□□ 2.18
VEGFA-232ENST00000640653 TNPO1Q92973 898 aaKnown RBP28.7■■■□□ 2.18
VEGFA-232ENST00000640653 DEFB103AP81534 67 aa28.69■■■□□ 2.18
VEGFA-232ENST00000640653 TCTN1Q2MV58 587 aa28.69■■■□□ 2.18
VEGFA-232ENST00000640653 CPLX2Q6PUV4 134 aaKnown RBP28.69■■■□□ 2.18
VEGFA-232ENST00000640653 DBF4BQ8NFT6 615 aa28.69■■■□□ 2.18
VEGFA-232ENST00000640653 CRYGNQ8WXF5 182 aa28.69■■■□□ 2.18
VEGFA-232ENST00000640653 ZBED2Q9BTP6 218 aa28.69■■■□□ 2.18
VEGFA-232ENST00000640653 SH3GLB2Q9NR46 395 aa28.69■■■□□ 2.18
VEGFA-232ENST00000640653 VPS54Q9P1Q0 977 aa28.69■■■□□ 2.18
VEGFA-232ENST00000640653 FAM86B1E9PN63 330 aa28.68■■■□□ 2.18
VEGFA-232ENST00000640653 FAM86B2P0C5J1 330 aa28.68■■■□□ 2.18
VEGFA-232ENST00000640653 SETQ01105 290 aaPredicted RBP28.68■■■□□ 2.18
VEGFA-232ENST00000640653 PLEKHG4Q58EX7 1191 aa28.68■■■□□ 2.18
VEGFA-232ENST00000640653 RSPH3Q86UC2 560 aa28.68■■■□□ 2.18
VEGFA-232ENST00000640653 PCYT2Q99447 389 aa28.68■■■□□ 2.18
VEGFA-232ENST00000640653 TUBE1Q9UJT0 475 aa28.68■■■□□ 2.18
VEGFA-232ENST00000640653 RRN3P2A6NIE6 340 aa28.67■■■□□ 2.18
VEGFA-232ENST00000640653 PLPPR4Q7Z2D5 763 aa28.67■■■□□ 2.18
VEGFA-232ENST00000640653 RPAINQ86UA6 219 aa28.67■■■□□ 2.18
VEGFA-232ENST00000640653 SEPT8Q92599 483 aa28.67■■■□□ 2.18
VEGFA-232ENST00000640653 IGLV3-22A0A075B6J6 115 aa28.66■■■□□ 2.18
VEGFA-232ENST00000640653 ADAMTS3O15072 1205 aa28.66■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms