RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 PTH1RQ03431 593 aa22.38■■□□□ 1.17
CLN3-262ENST00000637699 SART3Q15020 963 aaKnown RBP22.38■■□□□ 1.17
CLN3-262ENST00000637699 USP17L6PQ6QN14 398 aa22.38■■□□□ 1.17
CLN3-262ENST00000637699 CATIPQ7Z7H3 387 aa22.38■■□□□ 1.17
CLN3-262ENST00000637699 EXOC6Q8TAG9 804 aa22.38■■□□□ 1.17
CLN3-262ENST00000637699 SMARCC2Q8TAQ2 1214 aa22.38■■□□□ 1.17
CLN3-262ENST00000637699 CLDND1Q9NY35 253 aa22.38■■□□□ 1.17
CLN3-262ENST00000637699 TAF6LQ9Y6J9 622 aa22.38■■□□□ 1.17
CLN3-262ENST00000637699 NLRC5Q86WI3 1866 aa22.38■■□□□ 1.17
CLN3-262ENST00000637699 GHRP10912 638 aa22.37■■□□□ 1.17
CLN3-262ENST00000637699 CSPP1Q1MSJ5 1256 aa22.37■■□□□ 1.17
CLN3-262ENST00000637699 RUFY4Q6ZNE9 571 aa22.37■■□□□ 1.17
CLN3-262ENST00000637699 CUL5Q93034 780 aa22.37■■□□□ 1.17
CLN3-262ENST00000637699 NRCAMQ92823 1304 aa22.36■■□□□ 1.17
CLN3-262ENST00000637699 E7EWF7 191 aa22.36■■□□□ 1.17
CLN3-262ENST00000637699 PCNX4Q63HM2 1172 aa22.36■■□□□ 1.17
CLN3-262ENST00000637699 NCOA7Q8NI08 942 aa22.36■■□□□ 1.17
CLN3-262ENST00000637699 SENP7Q9BQF6 1050 aa22.36■■□□□ 1.17
CLN3-262ENST00000637699 FAM50BQ9Y247 325 aa22.36■■□□□ 1.17
CLN3-262ENST00000637699 KAT6AQ92794 2004 aa22.35■■□□□ 1.17
CLN3-262ENST00000637699 GSPT1P15170 499 aaKnown RBP22.35■■□□□ 1.17
CLN3-262ENST00000637699 TCF7P36402 384 aaPredicted RBP22.35■■□□□ 1.17
CLN3-262ENST00000637699 COL19A1Q14993 1142 aa22.35■■□□□ 1.17
CLN3-262ENST00000637699 NLRX1Q86UT6 975 aa22.35■■□□□ 1.17
CLN3-262ENST00000637699 RRP36Q96EU6 259 aaKnown RBP22.35■■□□□ 1.17
CLN3-262ENST00000637699 COL4A6Q14031 1691 aa22.35■■□□□ 1.17
CLN3-262ENST00000637699 MEIS2O14770 477 aa22.34■■□□□ 1.17
CLN3-262ENST00000637699 GRM6O15303 877 aa22.34■■□□□ 1.17
CLN3-262ENST00000637699 DCXO43602 365 aa22.34■■□□□ 1.17
CLN3-262ENST00000637699 MARK3P27448 753 aa22.34■■□□□ 1.17
CLN3-262ENST00000637699 BMPR1AP36894 532 aa22.34■■□□□ 1.17
CLN3-262ENST00000637699 ZP2Q05996 745 aa22.34■■□□□ 1.17
CLN3-262ENST00000637699 LPIN1Q14693 890 aa22.34■■□□□ 1.17
CLN3-262ENST00000637699 XRRA1Q6P2D8 792 aa22.34■■□□□ 1.17
CLN3-262ENST00000637699 RPAINQ86UA6 219 aa22.34■■□□□ 1.17
CLN3-262ENST00000637699 GIMAP8Q8ND71 665 aaPredicted RBP22.34■■□□□ 1.17
CLN3-262ENST00000637699 IGDCC4Q8TDY8 1250 aa22.34■■□□□ 1.17
CLN3-262ENST00000637699 RUFY2Q8WXA3 655 aa22.34■■□□□ 1.17
CLN3-262ENST00000637699 EHMT1Q9H9B1 1298 aa22.34■■□□□ 1.17
CLN3-262ENST00000637699 C5orf42Q9H799 3197 aa22.34■■□□□ 1.17
CLN3-262ENST00000637699 PIEZO1Q92508 2521 aa22.33■■□□□ 1.17
CLN3-262ENST00000637699 RALGAPA2Q2PPJ7 1873 aa22.33■■□□□ 1.17
CLN3-262ENST00000637699 C5orf67F2Z3F1 127 aa22.33■■□□□ 1.17
CLN3-262ENST00000637699 ENPP3O14638 875 aa22.33■■□□□ 1.17
CLN3-262ENST00000637699 ATP9AO75110 1047 aa22.33■■□□□ 1.17
CLN3-262ENST00000637699 CSPG5O95196 566 aa22.33■■□□□ 1.17
CLN3-262ENST00000637699 RB1P06400 928 aa22.33■■□□□ 1.17
CLN3-262ENST00000637699 PDE4AP27815 886 aa22.33■■□□□ 1.17
CLN3-262ENST00000637699 LTBRP36941 435 aa22.33■■□□□ 1.17
CLN3-262ENST00000637699 ANTXR2P58335 489 aa22.33■■□□□ 1.17
CLN3-262ENST00000637699 PPFIA1Q13136 1202 aa22.33■■□□□ 1.17
CLN3-262ENST00000637699 CLUL1Q15846 466 aa22.33■■□□□ 1.17
CLN3-262ENST00000637699 TTC22Q5TAA0 569 aa22.33■■□□□ 1.17
CLN3-262ENST00000637699 TAF2Q6P1X5 1199 aa22.33■■□□□ 1.17
CLN3-262ENST00000637699 C11orf84Q9BUA3 381 aaPredicted RBP22.33■■□□□ 1.17
CLN3-262ENST00000637699 MYL10Q9BUA6 226 aa22.33■■□□□ 1.17
CLN3-262ENST00000637699 PRKAG3Q9UGI9 489 aa22.33■■□□□ 1.17
CLN3-262ENST00000637699 ADGRA3Q8IWK6 1321 aa22.32■■□□□ 1.16
CLN3-262ENST00000637699 POTEB3A0JP26 581 aa22.32■■□□□ 1.16
CLN3-262ENST00000637699 PIK3CDO00329 1044 aa22.32■■□□□ 1.16
CLN3-262ENST00000637699 NCK2O43639 380 aa22.32■■□□□ 1.16
CLN3-262ENST00000637699 LINC00271P0C7V0 271 aa22.32■■□□□ 1.16
CLN3-262ENST00000637699 CHMLP26374 656 aa22.32■■□□□ 1.16
CLN3-262ENST00000637699 MGAT3Q09327 533 aa22.32■■□□□ 1.16
CLN3-262ENST00000637699 HYAL1Q12794 435 aa22.32■■□□□ 1.16
CLN3-262ENST00000637699 POTEBQ6S5H4 581 aa22.32■■□□□ 1.16
CLN3-262ENST00000637699 RSPH3Q86UC2 560 aa22.32■■□□□ 1.16
CLN3-262ENST00000637699 ALYREFQ86V81 257 aaKnown RBP22.32■■□□□ 1.16
CLN3-262ENST00000637699 CTCFLQ8NI51 663 aaPredicted RBP22.32■■□□□ 1.16
CLN3-262ENST00000637699 DNAJB3Q8WWF6 145 aa22.32■■□□□ 1.16
CLN3-262ENST00000637699 SPZ1Q9BXG8 430 aa22.32■■□□□ 1.16
CLN3-262ENST00000637699 SEC63Q9UGP8 760 aaKnown RBP22.32■■□□□ 1.16
CLN3-262ENST00000637699 GSTTP1A0A1W2PQM5 241 aa22.31■■□□□ 1.16
CLN3-262ENST00000637699 KCNA2P16389 499 aa22.31■■□□□ 1.16
CLN3-262ENST00000637699 DLX2Q07687 328 aaPredicted RBP22.31■■□□□ 1.16
CLN3-262ENST00000637699 BTG3Q14201 252 aaPredicted RBP22.31■■□□□ 1.16
CLN3-262ENST00000637699 GRIK4Q16099 956 aa22.31■■□□□ 1.16
CLN3-262ENST00000637699 ADHFE1Q8IWW8 467 aa22.31■■□□□ 1.16
CLN3-262ENST00000637699 ZNF654Q8IZM8 581 aa22.31■■□□□ 1.16
CLN3-262ENST00000637699 SEPT1Q8WYJ6 367 aa22.31■■□□□ 1.16
CLN3-262ENST00000637699 GLG1Q92896 1179 aa22.31■■□□□ 1.16
CLN3-262ENST00000637699 GPRASP2Q96D09 838 aa22.31■■□□□ 1.16
CLN3-262ENST00000637699 LMAN2LQ9H0V9 348 aa22.31■■□□□ 1.16
CLN3-262ENST00000637699 IGFLR1Q9H665 355 aa22.31■■□□□ 1.16
CLN3-262ENST00000637699 PKD2L1Q9P0L9 805 aa22.31■■□□□ 1.16
CLN3-262ENST00000637699 TUBE1Q9UJT0 475 aa22.31■■□□□ 1.16
CLN3-262ENST00000637699 RWDD3Q9Y3V2 267 aa22.31■■□□□ 1.16
CLN3-262ENST00000637699 C19orf67A6NJJ6 358 aa22.3■■□□□ 1.16
CLN3-262ENST00000637699 KIF5BP33176 963 aa22.3■■□□□ 1.16
CLN3-262ENST00000637699 IGBP1P78318 339 aa22.3■■□□□ 1.16
CLN3-262ENST00000637699 CTC1Q2NKJ3 1217 aa22.3■■□□□ 1.16
CLN3-262ENST00000637699 FBXO47Q5MNV8 452 aa22.3■■□□□ 1.16
CLN3-262ENST00000637699 MB21D2Q8IYB1 491 aaPredicted RBP22.3■■□□□ 1.16
CLN3-262ENST00000637699 ZBTB10Q96DT7 871 aa22.3■■□□□ 1.16
CLN3-262ENST00000637699 RC3H2Q9HBD1 1191 aaKnown RBP22.3■■□□□ 1.16
CLN3-262ENST00000637699 LY9Q9HBG7 655 aa22.3■■□□□ 1.16
CLN3-262ENST00000637699 ERAP1Q9NZ08 941 aa22.3■■□□□ 1.16
CLN3-262ENST00000637699 CDY2AQ9Y6F7 541 aa22.3■■□□□ 1.16
CLN3-262ENST00000637699 ITGB5P18084 799 aa22.29■■□□□ 1.16
CLN3-262ENST00000637699 GTF2F1P35269 517 aaKnown RBP eCLIP22.29■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms