RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 ADAM17P78536 824 aa21.95■■□□□ 1.1
CLN3-260ENST00000637578 SP4Q02446 784 aa21.95■■□□□ 1.1
CLN3-260ENST00000637578 LRRC8DQ7L1W4 858 aa21.95■■□□□ 1.1
CLN3-260ENST00000637578 REXO1Q8N1G1 1221 aaKnown RBP21.95■■□□□ 1.1
CLN3-260ENST00000637578 CCDC148Q8NFR7 591 aa21.95■■□□□ 1.1
CLN3-260ENST00000637578 PBX4Q9BYU1 374 aa21.95■■□□□ 1.1
CLN3-260ENST00000637578 AGO4Q9HCK5 861 aaKnown RBP21.95■■□□□ 1.1
CLN3-260ENST00000637578 TRIP12Q14669 1992 aaPredicted RBP21.94■■□□□ 1.1
CLN3-260ENST00000637578 CXCL10P02778 98 aa21.94■■□□□ 1.1
CLN3-260ENST00000637578 SSRP1Q08945 709 aaKnown RBP21.94■■□□□ 1.1
CLN3-260ENST00000637578 UTP14CQ5TAP6 766 aaKnown RBP21.94■■□□□ 1.1
CLN3-260ENST00000637578 JPH1Q9HDC5 661 aaPredicted RBP21.94■■□□□ 1.1
CLN3-260ENST00000637578 PKD2L1Q9P0L9 805 aa21.94■■□□□ 1.1
CLN3-260ENST00000637578 SCN5AQ14524 2016 aa21.94■■□□□ 1.1
CLN3-260ENST00000637578 TANC1Q9C0D5 1861 aa21.94■■□□□ 1.1
CLN3-260ENST00000637578 COL6A3P12111 3177 aa21.93■■□□□ 1.1
CLN3-260ENST00000637578 IGLV3-22A0A075B6J6 115 aa21.93■■□□□ 1.1
CLN3-260ENST00000637578 FAM86B1E9PN63 330 aa21.93■■□□□ 1.1
CLN3-260ENST00000637578 FAM86B2P0C5J1 330 aa21.93■■□□□ 1.1
CLN3-260ENST00000637578 ITGB3BPQ13352 177 aaPredicted RBP21.93■■□□□ 1.1
CLN3-260ENST00000637578 TRIM22Q8IYM9 498 aa21.93■■□□□ 1.1
CLN3-260ENST00000637578 BICD2Q8TD16 824 aa21.93■■□□□ 1.1
CLN3-260ENST00000637578 ATP6V0A1Q93050 837 aa21.93■■□□□ 1.1
CLN3-260ENST00000637578 FAM161BQ96MY7 647 aa21.93■■□□□ 1.1
CLN3-260ENST00000637578 TBC1D32Q96NH3 1257 aa21.93■■□□□ 1.1
CLN3-260ENST00000637578 VPS54Q9P1Q0 977 aa21.93■■□□□ 1.1
CLN3-260ENST00000637578 SLC9A2Q9UBY0 812 aa21.93■■□□□ 1.1
CLN3-260ENST00000637578 SLC4A7Q9Y6M7 1214 aa21.93■■□□□ 1.1
CLN3-260ENST00000637578 CPLX1O14810 134 aa21.92■■□□□ 1.1
CLN3-260ENST00000637578 TREHO43280 583 aa21.92■■□□□ 1.1
CLN3-260ENST00000637578 LGR5O75473 907 aa21.92■■□□□ 1.1
CLN3-260ENST00000637578 ACTN1P12814 892 aa21.92■■□□□ 1.1
CLN3-260ENST00000637578 PBX2P40425 430 aa21.92■■□□□ 1.1
CLN3-260ENST00000637578 ZNF618Q5T7W0 954 aa21.92■■□□□ 1.1
CLN3-260ENST00000637578 FAM177A1Q8N128 213 aaPredicted RBP21.92■■□□□ 1.1
CLN3-260ENST00000637578 TIFAQ96CG3 184 aa21.92■■□□□ 1.1
CLN3-260ENST00000637578 PCYT2Q99447 389 aa21.92■■□□□ 1.1
CLN3-260ENST00000637578 KIF2CQ99661 725 aa21.92■■□□□ 1.1
CLN3-260ENST00000637578 SETD4Q9NVD3 440 aa21.92■■□□□ 1.1
CLN3-260ENST00000637578 NBNO60934 754 aa21.91■■□□□ 1.1
CLN3-260ENST00000637578 DEXIO95424 95 aa21.91■■□□□ 1.1
CLN3-260ENST00000637578 GNAT1P11488 350 aa21.91■■□□□ 1.1
CLN3-260ENST00000637578 SCRN1Q12765 414 aa21.91■■□□□ 1.1
CLN3-260ENST00000637578 STK3Q13188 491 aa21.91■■□□□ 1.1
CLN3-260ENST00000637578 SDF4Q9BRK5 362 aa21.91■■□□□ 1.1
CLN3-260ENST00000637578 SMARCAD1Q9H4L7 1026 aa21.91■■□□□ 1.1
CLN3-260ENST00000637578 ERAP1Q9NZ08 941 aa21.91■■□□□ 1.1
CLN3-260ENST00000637578 TPCN1Q9ULQ1 816 aa21.91■■□□□ 1.1
CLN3-260ENST00000637578 EMSYQ7Z589 1322 aa21.91■■□□□ 1.1
CLN3-260ENST00000637578 NRCAMQ92823 1304 aa21.91■■□□□ 1.1
CLN3-260ENST00000637578 DHX15O43143 795 aaKnown RBP21.91■■□□□ 1.1
CLN3-260ENST00000637578 PFKFB2O60825 505 aa21.91■■□□□ 1.1
CLN3-260ENST00000637578 ATG7O95352 703 aa21.91■■□□□ 1.1
CLN3-260ENST00000637578 CIITAP33076 1130 aa21.91■■□□□ 1.1
CLN3-260ENST00000637578 ZNF76P36508 570 aa21.91■■□□□ 1.1
CLN3-260ENST00000637578 MBTPS1Q14703 1052 aa21.91■■□□□ 1.1
CLN3-260ENST00000637578 CPLX2Q6PUV4 134 aaKnown RBP21.91■■□□□ 1.1
CLN3-260ENST00000637578 TET1Q8NFU7 2136 aa21.91■■□□□ 1.1
CLN3-260ENST00000637578 CDX2Q99626 313 aaPredicted RBP21.91■■□□□ 1.1
CLN3-260ENST00000637578 FTOQ9C0B1 505 aaKnown RBP eCLIP21.91■■□□□ 1.1
CLN3-260ENST00000637578 EDIL3O43854 480 aa21.9■■□□□ 1.1
CLN3-260ENST00000637578 CAND2O75155 1236 aa21.9■■□□□ 1.1
CLN3-260ENST00000637578 BAIAP3O94812 1187 aa21.9■■□□□ 1.1
CLN3-260ENST00000637578 ACTR2P61160 394 aa21.9■■□□□ 1.1
CLN3-260ENST00000637578 RAB30Q15771 203 aa21.9■■□□□ 1.1
CLN3-260ENST00000637578 PLA2G4DQ86XP0 818 aa21.9■■□□□ 1.1
CLN3-260ENST00000637578 RASGRP4Q8TDF6 673 aa21.9■■□□□ 1.1
CLN3-260ENST00000637578 LMBR1Q8WVP7 490 aa21.9■■□□□ 1.1
CLN3-260ENST00000637578 ATP2A2P16615 1042 aaKnown RBP21.89■■□□□ 1.09
CLN3-260ENST00000637578 AK2P54819 239 aa21.89■■□□□ 1.09
CLN3-260ENST00000637578 ANKRD1Q15327 319 aa21.89■■□□□ 1.09
CLN3-260ENST00000637578 NPY5RQ15761 445 aa21.89■■□□□ 1.09
CLN3-260ENST00000637578 PHOSPHO2Q8TCD6 241 aa21.89■■□□□ 1.09
CLN3-260ENST00000637578 GLG1Q92896 1179 aa21.89■■□□□ 1.09
CLN3-260ENST00000637578 ZNF576Q9H609 170 aa21.89■■□□□ 1.09
CLN3-260ENST00000637578 IGKV6D-21A0A0A0MT36 114 aa21.88■■□□□ 1.09
CLN3-260ENST00000637578 ZBBXA8MT70 800 aa21.88■■□□□ 1.09
CLN3-260ENST00000637578 M0R2N6 131 aa21.88■■□□□ 1.09
CLN3-260ENST00000637578 THPOP40225 353 aa21.88■■□□□ 1.09
CLN3-260ENST00000637578 NLRP5P59047 1200 aa21.88■■□□□ 1.09
CLN3-260ENST00000637578 PLPPR4Q7Z2D5 763 aa21.88■■□□□ 1.09
CLN3-260ENST00000637578 RPAINQ86UA6 219 aa21.88■■□□□ 1.09
CLN3-260ENST00000637578 SLKQ9H2G2 1235 aaPredicted RBP21.88■■□□□ 1.09
CLN3-260ENST00000637578 MSRAQ9UJ68 235 aa21.88■■□□□ 1.09
CLN3-260ENST00000637578 PCDHA4Q9UN74 947 aa21.88■■□□□ 1.09
CLN3-260ENST00000637578 MBLAC1A4D2B0 266 aaPredicted RBP21.87■■□□□ 1.09
CLN3-260ENST00000637578 RSPH10B2B2RC85 870 aa21.87■■□□□ 1.09
CLN3-260ENST00000637578 IPO5O00410 1097 aaKnown RBP21.87■■□□□ 1.09
CLN3-260ENST00000637578 CDKL5O76039 1030 aa21.87■■□□□ 1.09
CLN3-260ENST00000637578 CCNE2O96020 404 aa21.87■■□□□ 1.09
CLN3-260ENST00000637578 RSPH10BP0C881 870 aa21.87■■□□□ 1.09
CLN3-260ENST00000637578 NEK4P51957 841 aa21.87■■□□□ 1.09
CLN3-260ENST00000637578 SETQ01105 290 aaPredicted RBP21.87■■□□□ 1.09
CLN3-260ENST00000637578 CNKSR3Q6P9H4 555 aa21.87■■□□□ 1.09
CLN3-260ENST00000637578 DAGLBQ8NCG7 672 aa21.87■■□□□ 1.09
CLN3-260ENST00000637578 LENG9Q96B70 501 aa21.87■■□□□ 1.09
CLN3-260ENST00000637578 AIFM3Q96NN9 605 aa21.87■■□□□ 1.09
CLN3-260ENST00000637578 YBX2Q9Y2T7 364 aaKnown RBP21.87■■□□□ 1.09
CLN3-260ENST00000637578 PCDHA11Q9Y5I1 949 aa21.87■■□□□ 1.09
CLN3-260ENST00000637578 CDH23Q9H251 3354 aa21.87■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms