RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 PIGWQ7Z7B1 504 aa8.62□□□□□ -1.03
VPS11-209ENST00000622309 PI4KAP1Q8N8J0 262 aa8.62□□□□□ -1.03
VPS11-209ENST00000622309 SMYD1Q8NB12 490 aa8.62□□□□□ -1.03
VPS11-209ENST00000622309 HPS3Q969F9 1004 aa8.62□□□□□ -1.03
VPS11-209ENST00000622309 ABTB1Q969K4 478 aaPredicted RBP8.62□□□□□ -1.03
VPS11-209ENST00000622309 ZNF653Q96CK0 615 aa8.62□□□□□ -1.03
VPS11-209ENST00000622309 NLRP3Q96P20 1036 aa8.62□□□□□ -1.03
VPS11-209ENST00000622309 RNPEPL1Q9HAU8 725 aa8.62□□□□□ -1.03
VPS11-209ENST00000622309 CCDC87Q9NVE4 849 aa8.62□□□□□ -1.03
VPS11-209ENST00000622309 NLRP2Q9NX02 1062 aa8.62□□□□□ -1.03
VPS11-209ENST00000622309 TUBGCP4Q9UGJ1 667 aa8.62□□□□□ -1.03
VPS11-209ENST00000622309 PA2G4Q9UQ80 394 aaKnown RBP8.62□□□□□ -1.03
VPS11-209ENST00000622309 CHMP2BQ9UQN3 213 aa8.62□□□□□ -1.03
VPS11-209ENST00000622309 RCCD1A6NED2 376 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 TMEM221A6NGB7 291 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 DCAF8L1A6NGE4 600 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 HNRNPRO43390 633 aaKnown RBP8.61□□□□□ -1.03
VPS11-209ENST00000622309 KCNA3P22001 575 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 YY1P25490 414 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 SMARCA1P28370 1054 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 CACNA2D1P54289 1103 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 CYP27A1Q02318 531 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 PTPAQ15257 358 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 PI16Q6UXB8 463 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 VPS37DQ86XT2 251 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 LRRC34Q8IZ02 419 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 IQCDQ96DY2 449 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 RSPH9Q9H1X1 276 aaPredicted RBP8.61□□□□□ -1.03
VPS11-209ENST00000622309 INTUQ9ULD6 942 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 ZMYND8Q9ULU4 1186 aaPredicted RBP8.61□□□□□ -1.03
VPS11-209ENST00000622309 FMN2Q9NZ56 1722 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 SKIP12755 728 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 GNAZP19086 355 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 MTMR3Q13615 1198 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 C1orf141Q5JVX7 400 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 IQCF2Q8IXL9 164 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 KCNH5Q8NCM2 988 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 SLC17A8Q8NDX2 589 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 CENPTQ96BT3 561 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 AGAP3Q96P47 875 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 KRT12Q99456 494 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 CORO1BQ9BR76 489 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 DDX23Q9BUQ8 820 aaKnown RBP8.61□□□□□ -1.03
VPS11-209ENST00000622309 PCDH18Q9HCL0 1135 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 ARHGEF3Q9NR81 526 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 HELLSQ9NRZ9 838 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 SLTMQ9NWH9 1034 aaKnown RBP eCLIP8.61□□□□□ -1.03
VPS11-209ENST00000622309 CIDEBQ9UHD4 219 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 BARX2Q9UMQ3 279 aaPredicted RBP8.61□□□□□ -1.03
VPS11-209ENST00000622309 CTNND2Q9UQB3 1225 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 TMEM98Q9Y2Y6 226 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 CD2APQ9Y5K6 639 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 SPATA31A3Q5VYP0 1347 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 A0A0G2JS52 829 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 GFPT2O94808 682 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 MOCS3O95396 460 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 RGPD1P0DJD0 1748 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 COPB2P35606 906 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 EXOSC10Q01780 885 aaKnown RBP8.61□□□□□ -1.03
VPS11-209ENST00000622309 MAP7Q14244 749 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 RCN2Q14257 317 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 STK11IPQ8N1F8 1099 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 STK32AQ8WU08 396 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 PTPRN2Q92932 1015 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 RMND1Q9NWS8 449 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 CTNNAL1Q9UBT7 734 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 NKX1-2Q9UD57 310 aaPredicted RBP8.61□□□□□ -1.03
VPS11-209ENST00000622309 LRWD1Q9UFC0 647 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 LIMA1Q9UHB6 759 aaKnown RBP8.61□□□□□ -1.03
VPS11-209ENST00000622309 SLC4A7Q9Y6M7 1214 aa8.61□□□□□ -1.03
VPS11-209ENST00000622309 MYH8P13535 1937 aa8.6□□□□□ -1.03
VPS11-209ENST00000622309 BRWD3Q6RI45 1802 aa8.6□□□□□ -1.03
VPS11-209ENST00000622309 GOLGA8BA8MQT2 603 aa8.6□□□□□ -1.03
VPS11-209ENST00000622309 CHGBP05060 677 aa8.6□□□□□ -1.03
VPS11-209ENST00000622309 ALOX15P16050 662 aaPredicted RBP8.6□□□□□ -1.03
VPS11-209ENST00000622309 AFMP43652 599 aa8.6□□□□□ -1.03
VPS11-209ENST00000622309 SLC39A6Q13433 755 aa8.6□□□□□ -1.03
VPS11-209ENST00000622309 TRIM29Q14134 588 aa8.6□□□□□ -1.03
VPS11-209ENST00000622309 P3H1Q32P28 736 aa8.6□□□□□ -1.03
VPS11-209ENST00000622309 SLF2Q8IX21 1173 aa8.6□□□□□ -1.03
VPS11-209ENST00000622309 ATP11CQ8NB49 1132 aa8.6□□□□□ -1.03
VPS11-209ENST00000622309 UCMAQ8WVF2 138 aa8.6□□□□□ -1.03
VPS11-209ENST00000622309 CLMNQ96JQ2 1002 aa8.6□□□□□ -1.03
VPS11-209ENST00000622309 NUDCD1Q96RS6 583 aa8.6□□□□□ -1.03
VPS11-209ENST00000622309 NHEJ1Q9H9Q4 299 aaPredicted RBP8.6□□□□□ -1.03
VPS11-209ENST00000622309 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.6□□□□□ -1.03
VPS11-209ENST00000622309 PDP2Q9P2J9 529 aa8.6□□□□□ -1.03
VPS11-209ENST00000622309 NWD2Q9ULI1 1742 aa8.6□□□□□ -1.03
VPS11-209ENST00000622309 COBLO75128 1261 aa8.6□□□□□ -1.03
VPS11-209ENST00000622309 SUN1O94901 812 aa8.6□□□□□ -1.03
VPS11-209ENST00000622309 CHN1P15882 459 aa8.6□□□□□ -1.03
VPS11-209ENST00000622309 PSMD7P51665 324 aa8.6□□□□□ -1.03
VPS11-209ENST00000622309 CCDC6Q16204 474 aa8.6□□□□□ -1.03
VPS11-209ENST00000622309 MAP7D1Q3KQU3 841 aa8.6□□□□□ -1.03
VPS11-209ENST00000622309 MCMDC2Q4G0Z9 681 aa8.6□□□□□ -1.03
VPS11-209ENST00000622309 NCCRP1Q6ZVX7 275 aaPredicted RBP8.6□□□□□ -1.03
VPS11-209ENST00000622309 SMYD4Q8IYR2 804 aaPredicted RBP8.6□□□□□ -1.03
VPS11-209ENST00000622309 RBBP8NLQ8NC74 664 aaPredicted RBP8.6□□□□□ -1.03
VPS11-209ENST00000622309 CTNNBL1Q8WYA6 563 aaPredicted RBP8.6□□□□□ -1.03
VPS11-209ENST00000622309 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms