RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 GAS7O60861 476 aa22.26■■□□□ 1.15
UPF3A-211ENST00000618700 BAG4O95429 457 aaKnown RBP22.26■■□□□ 1.15
UPF3A-211ENST00000618700 BMP15O95972 392 aa22.26■■□□□ 1.15
UPF3A-211ENST00000618700 C6orf222P0C671 652 aaPredicted RBP22.26■■□□□ 1.15
UPF3A-211ENST00000618700 RGS19P49795 217 aa22.26■■□□□ 1.15
UPF3A-211ENST00000618700 CPT1AP50416 773 aa22.26■■□□□ 1.15
UPF3A-211ENST00000618700 KRT76Q01546 638 aa22.26■■□□□ 1.15
UPF3A-211ENST00000618700 LRRC41Q15345 812 aa22.26■■□□□ 1.15
UPF3A-211ENST00000618700 SF3A1Q15459 793 aaKnown RBP22.26■■□□□ 1.15
UPF3A-211ENST00000618700 FSCN1Q16658 493 aaKnown RBP22.26■■□□□ 1.15
UPF3A-211ENST00000618700 CCSAPQ6IQ19 270 aaPredicted RBP22.26■■□□□ 1.15
UPF3A-211ENST00000618700 TMEM106CQ9BVX2 250 aa22.26■■□□□ 1.15
UPF3A-211ENST00000618700 POLR3EQ9NVU0 708 aa22.26■■□□□ 1.15
UPF3A-211ENST00000618700 CLIC4Q9Y696 253 aa22.26■■□□□ 1.15
UPF3A-211ENST00000618700 DDX39AO00148 427 aaKnown RBP22.25■■□□□ 1.15
UPF3A-211ENST00000618700 CAPN2P17655 700 aa22.25■■□□□ 1.15
UPF3A-211ENST00000618700 PRPHP41219 470 aa22.25■■□□□ 1.15
UPF3A-211ENST00000618700 NASPP49321 788 aaPredicted RBP22.25■■□□□ 1.15
UPF3A-211ENST00000618700 BEX3Q00994 111 aa22.25■■□□□ 1.15
UPF3A-211ENST00000618700 SP4Q02446 784 aa22.25■■□□□ 1.15
UPF3A-211ENST00000618700 SPIRE1Q08AE8 756 aa22.25■■□□□ 1.15
UPF3A-211ENST00000618700 PPP2R5CQ13362 524 aa22.25■■□□□ 1.15
UPF3A-211ENST00000618700 PTPAQ15257 358 aa22.25■■□□□ 1.15
UPF3A-211ENST00000618700 ZNF746Q6NUN9 644 aaPredicted RBP22.25■■□□□ 1.15
UPF3A-211ENST00000618700 RNF180Q86T96 592 aa22.25■■□□□ 1.15
UPF3A-211ENST00000618700 ZNF396Q96N95 335 aaPredicted RBP22.25■■□□□ 1.15
UPF3A-211ENST00000618700 UNC45AQ9H3U1 944 aa22.25■■□□□ 1.15
UPF3A-211ENST00000618700 CHMP5Q9NZZ3 219 aa22.25■■□□□ 1.15
UPF3A-211ENST00000618700 MORC2Q9Y6X9 1032 aaPredicted RBP22.25■■□□□ 1.15
UPF3A-211ENST00000618700 ELP1O95163 1332 aa22.25■■□□□ 1.15
UPF3A-211ENST00000618700 ACTR2P61160 394 aa22.24■■□□□ 1.15
UPF3A-211ENST00000618700 ATL3Q6DD88 541 aa22.24■■□□□ 1.15
UPF3A-211ENST00000618700 ARRDC4Q8NCT1 418 aa22.24■■□□□ 1.15
UPF3A-211ENST00000618700 CEP131Q9UPN4 1083 aa22.24■■□□□ 1.15
UPF3A-211ENST00000618700 ATP6V1DQ9Y5K8 247 aa22.24■■□□□ 1.15
UPF3A-211ENST00000618700 GSTTP1A0A1W2PQM5 241 aa22.23■■□□□ 1.15
UPF3A-211ENST00000618700 DNM1LO00429 736 aa22.23■■□□□ 1.15
UPF3A-211ENST00000618700 NOP56O00567 594 aaKnown RBP22.23■■□□□ 1.15
UPF3A-211ENST00000618700 MARCH6O60337 910 aa22.23■■□□□ 1.15
UPF3A-211ENST00000618700 ATG7O95352 703 aa22.23■■□□□ 1.15
UPF3A-211ENST00000618700 DNM1Q05193 864 aaKnown RBP22.23■■□□□ 1.15
UPF3A-211ENST00000618700 GNASQ5JWF2 1037 aa22.23■■□□□ 1.15
UPF3A-211ENST00000618700 ARL6IP4Q66PJ3 421 aaKnown RBP22.23■■□□□ 1.15
UPF3A-211ENST00000618700 SMAP1Q8IYB5 467 aaPredicted RBP22.23■■□□□ 1.15
UPF3A-211ENST00000618700 SEPT1Q8WYJ6 367 aa22.23■■□□□ 1.15
UPF3A-211ENST00000618700 TSEN34Q9BSV6 310 aaKnown RBP22.23■■□□□ 1.15
UPF3A-211ENST00000618700 TTC12Q9H892 705 aaPredicted RBP22.23■■□□□ 1.15
UPF3A-211ENST00000618700 TCEAL9Q9UHQ7 104 aa22.23■■□□□ 1.15
UPF3A-211ENST00000618700 WDR64B1ANS9 1081 aa22.22■■□□□ 1.15
UPF3A-211ENST00000618700 GABBR2O75899 941 aa22.22■■□□□ 1.15
UPF3A-211ENST00000618700 TFRCP02786 760 aaKnown RBP22.22■■□□□ 1.15
UPF3A-211ENST00000618700 TXKP42681 527 aa22.22■■□□□ 1.15
UPF3A-211ENST00000618700 JAK3P52333 1124 aa22.22■■□□□ 1.15
UPF3A-211ENST00000618700 KCNA10Q16322 511 aa22.22■■□□□ 1.15
UPF3A-211ENST00000618700 DGKDQ16760 1214 aa22.22■■□□□ 1.15
UPF3A-211ENST00000618700 FOXD4L6Q3SYB3 417 aaPredicted RBP22.22■■□□□ 1.15
UPF3A-211ENST00000618700 BRDTQ58F21 947 aaPredicted RBP22.22■■□□□ 1.15
UPF3A-211ENST00000618700 ABHD15Q6UXT9 468 aa22.22■■□□□ 1.15
UPF3A-211ENST00000618700 FOXD4L3Q6VB84 417 aaPredicted RBP22.22■■□□□ 1.15
UPF3A-211ENST00000618700 ANKLE1Q8NAG6 615 aa22.22■■□□□ 1.15
UPF3A-211ENST00000618700 PCDHA12Q9UN75 941 aa22.22■■□□□ 1.15
UPF3A-211ENST00000618700 CHMP2AO43633 222 aa22.21■■□□□ 1.15
UPF3A-211ENST00000618700 ZEB2O60315 1214 aa22.21■■□□□ 1.15
UPF3A-211ENST00000618700 PPFIA4O75335 1185 aa22.21■■□□□ 1.15
UPF3A-211ENST00000618700 YEATS4O95619 227 aa22.21■■□□□ 1.15
UPF3A-211ENST00000618700 SFNP31947 248 aa22.21■■□□□ 1.15
UPF3A-211ENST00000618700 TCF7P36402 384 aaPredicted RBP22.21■■□□□ 1.15
UPF3A-211ENST00000618700 PURAQ00577 322 aaKnown RBP22.21■■□□□ 1.15
UPF3A-211ENST00000618700 CEBPZQ03701 1054 aaKnown RBP22.21■■□□□ 1.15
UPF3A-211ENST00000618700 SLC39A14Q15043 492 aa22.21■■□□□ 1.15
UPF3A-211ENST00000618700 IL17AQ16552 155 aa22.21■■□□□ 1.15
UPF3A-211ENST00000618700 PCSK9Q8NBP7 692 aaKnown RBP22.21■■□□□ 1.15
UPF3A-211ENST00000618700 LINC00301Q8NCQ3 95 aa22.21■■□□□ 1.15
UPF3A-211ENST00000618700 RDM1Q8NG50 284 aa22.21■■□□□ 1.15
UPF3A-211ENST00000618700 TFIP11Q9UBB9 837 aaKnown RBP22.21■■□□□ 1.15
UPF3A-211ENST00000618700 IGKV6D-21A0A0A0MT36 114 aa22.2■■□□□ 1.14
UPF3A-211ENST00000618700 MOXD2PA6NHM9 499 aa22.2■■□□□ 1.14
UPF3A-211ENST00000618700 KBTBD13C9JR72 458 aa22.2■■□□□ 1.14
UPF3A-211ENST00000618700 EML1O00423 815 aa22.2■■□□□ 1.14
UPF3A-211ENST00000618700 KPNA6O60684 536 aa22.2■■□□□ 1.14
UPF3A-211ENST00000618700 LGR5O75473 907 aa22.2■■□□□ 1.14
UPF3A-211ENST00000618700 ASGR1P07306 291 aa22.2■■□□□ 1.14
UPF3A-211ENST00000618700 SUPT20HL2P0C7V6 817 aa22.2■■□□□ 1.14
UPF3A-211ENST00000618700 CHAMP1Q96JM3 812 aa22.2■■□□□ 1.14
UPF3A-211ENST00000618700 PCYT2Q99447 389 aa22.2■■□□□ 1.14
UPF3A-211ENST00000618700 DISC1Q9NRI5 854 aa22.2■■□□□ 1.14
UPF3A-211ENST00000618700 PHF24Q9UPV7 400 aa22.2■■□□□ 1.14
UPF3A-211ENST00000618700 EMSYQ7Z589 1322 aa22.2■■□□□ 1.14
UPF3A-211ENST00000618700 POTEMA6NI47 508 aa22.19■■□□□ 1.14
UPF3A-211ENST00000618700 F2P00734 622 aa22.19■■□□□ 1.14
UPF3A-211ENST00000618700 LGALS2P05162 132 aa22.19■■□□□ 1.14
UPF3A-211ENST00000618700 ZNF286BP0CG31 522 aa22.19■■□□□ 1.14
UPF3A-211ENST00000618700 ACLYP53396 1101 aa22.19■■□□□ 1.14
UPF3A-211ENST00000618700 NCAPH2Q6IBW4 605 aa22.19■■□□□ 1.14
UPF3A-211ENST00000618700 MIS18BP1Q6P0N0 1132 aa22.19■■□□□ 1.14
UPF3A-211ENST00000618700 MIER3Q7Z3K6 550 aa22.19■■□□□ 1.14
UPF3A-211ENST00000618700 CCDC60Q8IWA6 550 aaPredicted RBP22.19■■□□□ 1.14
UPF3A-211ENST00000618700 IGSF22Q8N9C0 903 aa22.19■■□□□ 1.14
UPF3A-211ENST00000618700 C16orf70Q9BSU1 422 aa22.19■■□□□ 1.14
UPF3A-211ENST00000618700 CFAP45Q9UL16 551 aa22.19■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms