RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 EFCAB13Q8IY85 973 aa15.18■□□□□ 0.02
CPSF1-212ENST00000616140 NSMCE1Q8WV22 266 aa15.18■□□□□ 0.02
CPSF1-212ENST00000616140 MTA3Q9BTC8 594 aa15.18■□□□□ 0.02
CPSF1-212ENST00000616140 EFCC1Q9HA90 598 aa15.18■□□□□ 0.02
CPSF1-212ENST00000616140 AFG3L2Q9Y4W6 797 aa15.18■□□□□ 0.02
CPSF1-212ENST00000616140 A0A087WUV0 522 aaPredicted RBP15.18■□□□□ 0.02
CPSF1-212ENST00000616140 BAG2O95816 211 aa15.18■□□□□ 0.02
CPSF1-212ENST00000616140 SLC8A1P32418 973 aa15.18■□□□□ 0.02
CPSF1-212ENST00000616140 CACNB3P54284 484 aa15.18■□□□□ 0.02
CPSF1-212ENST00000616140 EXOSC10Q01780 885 aaKnown RBP15.18■□□□□ 0.02
CPSF1-212ENST00000616140 PPP2R5AQ15172 486 aa15.18■□□□□ 0.02
CPSF1-212ENST00000616140 MAP7D3Q8IWC1 876 aa15.18■□□□□ 0.02
CPSF1-212ENST00000616140 ARAP3Q8WWN8 1544 aa15.18■□□□□ 0.02
CPSF1-212ENST00000616140 FGGP02679 453 aa15.18■□□□□ 0.02
CPSF1-212ENST00000616140 SNAP25P60880 206 aa15.18■□□□□ 0.02
CPSF1-212ENST00000616140 PIGOQ8TEQ8 1089 aa15.18■□□□□ 0.02
CPSF1-212ENST00000616140 IQGAP3Q86VI3 1631 aa15.18■□□□□ 0.02
CPSF1-212ENST00000616140 USP17L5A8MUK1 530 aa15.17■□□□□ 0.02
CPSF1-212ENST00000616140 USP17L15C9J2P7 530 aa15.17■□□□□ 0.02
CPSF1-212ENST00000616140 USP17L13C9JLJ4 530 aa15.17■□□□□ 0.02
CPSF1-212ENST00000616140 USP17L11C9JVI0 530 aa15.17■□□□□ 0.02
CPSF1-212ENST00000616140 USP17L18D6R9N7 530 aa15.17■□□□□ 0.02
CPSF1-212ENST00000616140 USP17L22D6RA61 530 aa15.17■□□□□ 0.02
CPSF1-212ENST00000616140 USP17L17D6RBQ6 530 aa15.17■□□□□ 0.02
CPSF1-212ENST00000616140 USP17L19D6RCP7 530 aa15.17■□□□□ 0.02
CPSF1-212ENST00000616140 USP17L20D6RJB6 530 aa15.17■□□□□ 0.02
CPSF1-212ENST00000616140 USP17L24Q0WX57 530 aa15.17■□□□□ 0.02
CPSF1-212ENST00000616140 E2F5Q15329 346 aa15.17■□□□□ 0.02
CPSF1-212ENST00000616140 USP17L6PQ6QN14 398 aa15.17■□□□□ 0.02
CPSF1-212ENST00000616140 PPP4R3CPQ6ZMV5 832 aa15.17■□□□□ 0.02
CPSF1-212ENST00000616140 SPATA31A3Q5VYP0 1347 aa15.17■□□□□ 0.02
CPSF1-212ENST00000616140 LRRC53A6NM62 1247 aa15.17■□□□□ 0.02
CPSF1-212ENST00000616140 FOXO4P98177 505 aa15.17■□□□□ 0.02
CPSF1-212ENST00000616140 TRIP13Q15645 432 aaPredicted RBP15.17■□□□□ 0.02
CPSF1-212ENST00000616140 RPUSD2Q8IZ73 545 aaKnown RBP15.17■□□□□ 0.02
CPSF1-212ENST00000616140 KLHL29Q96CT2 875 aa15.17■□□□□ 0.02
CPSF1-212ENST00000616140 ANAPC5Q9UJX4 755 aa15.17■□□□□ 0.02
CPSF1-212ENST00000616140 RASGRF2O14827 1237 aa15.17■□□□□ 0.02
CPSF1-212ENST00000616140 RAD17O75943 681 aa15.17■□□□□ 0.02
CPSF1-212ENST00000616140 RCAN1P53805 252 aa15.17■□□□□ 0.02
CPSF1-212ENST00000616140 RABL6Q3YEC7 729 aaPredicted RBP15.17■□□□□ 0.02
CPSF1-212ENST00000616140 ATG9AQ7Z3C6 839 aa15.17■□□□□ 0.02
CPSF1-212ENST00000616140 DPF2Q92785 391 aa15.17■□□□□ 0.02
CPSF1-212ENST00000616140 TRIM11Q96F44 468 aa15.17■□□□□ 0.02
CPSF1-212ENST00000616140 IL25Q9H293 177 aa15.17■□□□□ 0.02
CPSF1-212ENST00000616140 CPSF2Q9P2I0 782 aaKnown RBP15.17■□□□□ 0.02
CPSF1-212ENST00000616140 A2ML1A8K2U0 1454 aa15.17■□□□□ 0.02
CPSF1-212ENST00000616140 SYNJ2BP-COX16A0A087WUM0 186 aa15.17■□□□□ 0.02
CPSF1-212ENST00000616140 M0QZ92 97 aa15.17■□□□□ 0.02
CPSF1-212ENST00000616140 PALMO75781 387 aa15.17■□□□□ 0.02
CPSF1-212ENST00000616140 GUCY1A2P33402 732 aa15.17■□□□□ 0.02
CPSF1-212ENST00000616140 NT5C2P49902 561 aa15.17■□□□□ 0.02
CPSF1-212ENST00000616140 PDCLQ13371 301 aa15.17■□□□□ 0.02
CPSF1-212ENST00000616140 MTF1Q14872 753 aa15.17■□□□□ 0.02
CPSF1-212ENST00000616140 IQCB1Q15051 598 aa15.17■□□□□ 0.02
CPSF1-212ENST00000616140 NME8Q8N427 588 aa15.17■□□□□ 0.02
CPSF1-212ENST00000616140 FAM149B1Q96BN6 582 aa15.17■□□□□ 0.02
CPSF1-212ENST00000616140 IRX2Q9BZI1 471 aaPredicted RBP15.17■□□□□ 0.02
CPSF1-212ENST00000616140 COX16Q9P0S2 106 aa15.17■□□□□ 0.02
CPSF1-212ENST00000616140 HECW2Q9P2P5 1572 aa15.17■□□□□ 0.02
CPSF1-212ENST00000616140 GOLGA8IPA6NC78 632 aa15.16■□□□□ 0.02
CPSF1-212ENST00000616140 GOLGA8JA6NMD2 632 aa15.16■□□□□ 0.02
CPSF1-212ENST00000616140 SAT1P21673 171 aa15.16■□□□□ 0.02
CPSF1-212ENST00000616140 TFAMQ00059 246 aaKnown RBP15.16■□□□□ 0.02
CPSF1-212ENST00000616140 DR1Q01658 176 aa15.16■□□□□ 0.02
CPSF1-212ENST00000616140 SNCBQ16143 134 aa15.16■□□□□ 0.02
CPSF1-212ENST00000616140 SLC17A8Q8NDX2 589 aa15.16■□□□□ 0.02
CPSF1-212ENST00000616140 MIPOL1Q8TD10 442 aa15.16■□□□□ 0.02
CPSF1-212ENST00000616140 SH3BP5O60239 455 aa15.16■□□□□ 0.02
CPSF1-212ENST00000616140 EIF2AK2P19525 551 aaKnown RBP15.16■□□□□ 0.02
CPSF1-212ENST00000616140 GABPAQ06546 454 aa15.16■□□□□ 0.02
CPSF1-212ENST00000616140 METTL16Q86W50 562 aaKnown RBP15.16■□□□□ 0.02
CPSF1-212ENST00000616140 DNAJC17Q9NVM6 304 aaKnown RBP15.16■□□□□ 0.02
CPSF1-212ENST00000616140 NXF1Q9UBU9 619 aaKnown RBP15.16■□□□□ 0.02
CPSF1-212ENST00000616140 ADGRL3Q9HAR2 1447 aa15.16■□□□□ 0.02
CPSF1-212ENST00000616140 ANO9A1A5B4 782 aa15.16■□□□□ 0.02
CPSF1-212ENST00000616140 DYNLT1P63172 113 aa15.16■□□□□ 0.02
CPSF1-212ENST00000616140 ARHGAP4P98171 946 aa15.16■□□□□ 0.02
CPSF1-212ENST00000616140 PDE1BQ01064 536 aa15.16■□□□□ 0.02
CPSF1-212ENST00000616140 BRINP3Q76B58 766 aa15.16■□□□□ 0.02
CPSF1-212ENST00000616140 MIGA2Q7L4E1 593 aa15.16■□□□□ 0.02
CPSF1-212ENST00000616140 DNAJC5Q9H3Z4 198 aa15.16■□□□□ 0.02
CPSF1-212ENST00000616140 SEPT10Q9P0V9 454 aa15.16■□□□□ 0.02
CPSF1-212ENST00000616140 CDHR2Q9BYE9 1310 aa15.16■□□□□ 0.02
CPSF1-212ENST00000616140 E9PMD0 336 aa15.15■□□□□ 0.02
CPSF1-212ENST00000616140 TRIM28Q13263 835 aaKnown RBP15.15■□□□□ 0.02
CPSF1-212ENST00000616140 HACE1Q8IYU2 909 aa15.15■□□□□ 0.02
CPSF1-212ENST00000616140 SCYL3Q8IZE3 742 aa15.15■□□□□ 0.02
CPSF1-212ENST00000616140 CEP95Q96GE4 821 aa15.15■□□□□ 0.02
CPSF1-212ENST00000616140 CFAP57Q96MR6 1250 aa15.15■□□□□ 0.02
CPSF1-212ENST00000616140 WDR24Q96S15 920 aa15.15■□□□□ 0.02
CPSF1-212ENST00000616140 MRPL47Q9HD33 250 aaKnown RBP15.15■□□□□ 0.02
CPSF1-212ENST00000616140 CCDC188H7C350 402 aa15.15■□□□□ 0.02
CPSF1-212ENST00000616140 RPS6KA2Q15349 733 aa15.15■□□□□ 0.02
CPSF1-212ENST00000616140 NXNQ6DKJ4 435 aa15.15■□□□□ 0.02
CPSF1-212ENST00000616140 GADL1Q6ZQY3 521 aa15.15■□□□□ 0.02
CPSF1-212ENST00000616140 SESTD1Q86VW0 696 aa15.15■□□□□ 0.02
CPSF1-212ENST00000616140 SPZ1Q9BXG8 430 aa15.15■□□□□ 0.02
CPSF1-212ENST00000616140 CALN1Q9BXU9 219 aa15.15■□□□□ 0.02
CPSF1-212ENST00000616140 TAF6LQ9Y6J9 622 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms