RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 EVPLQ92817 2033 aa13.17□□□□□ -0.3
LINC00539-204ENST00000608957 GSTTP1A0A1W2PQM5 241 aa13.16□□□□□ -0.3
LINC00539-204ENST00000608957 SPDYE3A6NKU9 549 aa13.16□□□□□ -0.3
LINC00539-204ENST00000608957 H3BRB1 525 aa13.16□□□□□ -0.3
LINC00539-204ENST00000608957 DNAJB2P25686 324 aa13.16□□□□□ -0.3
LINC00539-204ENST00000608957 GJB2P29033 226 aa13.16□□□□□ -0.3
LINC00539-204ENST00000608957 NUCB2P80303 420 aa13.16□□□□□ -0.3
LINC00539-204ENST00000608957 NLRX1Q86UT6 975 aa13.16□□□□□ -0.3
LINC00539-204ENST00000608957 C7orf31Q8N865 590 aa13.16□□□□□ -0.3
LINC00539-204ENST00000608957 NSUN7Q8NE18 718 aaKnown RBP13.16□□□□□ -0.3
LINC00539-204ENST00000608957 PBX4Q9BYU1 374 aa13.16□□□□□ -0.3
LINC00539-204ENST00000608957 TUT1Q9H6E5 874 aaKnown RBP13.16□□□□□ -0.3
LINC00539-204ENST00000608957 PKD2L1Q9P0L9 805 aa13.16□□□□□ -0.3
LINC00539-204ENST00000608957 CCDC196A0A1B0GTZ2 297 aa13.15□□□□□ -0.3
LINC00539-204ENST00000608957 ESYT2A0FGR8 921 aa13.15□□□□□ -0.3
LINC00539-204ENST00000608957 SMIM10L2AP0DMW4 78 aa13.15□□□□□ -0.3
LINC00539-204ENST00000608957 SMIM10L2BP0DMW5 78 aa13.15□□□□□ -0.3
LINC00539-204ENST00000608957 ARP10275 920 aa13.15□□□□□ -0.3
LINC00539-204ENST00000608957 CKBP12277 381 aa13.15□□□□□ -0.3
LINC00539-204ENST00000608957 IFNAR1P17181 557 aa13.15□□□□□ -0.3
LINC00539-204ENST00000608957 SREBF1P36956 1147 aa13.15□□□□□ -0.3
LINC00539-204ENST00000608957 HMGN5P82970 282 aaKnown RBP13.15□□□□□ -0.3
LINC00539-204ENST00000608957 PTK7Q13308 1070 aa13.15□□□□□ -0.3
LINC00539-204ENST00000608957 BFSP2Q13515 415 aa13.15□□□□□ -0.3
LINC00539-204ENST00000608957 MTMR1Q13613 665 aa13.15□□□□□ -0.3
LINC00539-204ENST00000608957 MBTPS1Q14703 1052 aa13.15□□□□□ -0.3
LINC00539-204ENST00000608957 UTP14CQ5TAP6 766 aaKnown RBP13.15□□□□□ -0.3
LINC00539-204ENST00000608957 JAKMIP3Q5VZ66 844 aa13.15□□□□□ -0.3
LINC00539-204ENST00000608957 RPUSD2Q8IZ73 545 aaKnown RBP13.15□□□□□ -0.3
LINC00539-204ENST00000608957 CAGE1Q8TC20 777 aa13.15□□□□□ -0.3
LINC00539-204ENST00000608957 CRYGNQ8WXF5 182 aa13.15□□□□□ -0.3
LINC00539-204ENST00000608957 CDX2Q99626 313 aaPredicted RBP13.15□□□□□ -0.3
LINC00539-204ENST00000608957 MXRA8Q9BRK3 442 aa13.15□□□□□ -0.3
LINC00539-204ENST00000608957 ZMYND12Q9H0C1 365 aa13.15□□□□□ -0.3
LINC00539-204ENST00000608957 RNPEPQ9H4A4 650 aa13.15□□□□□ -0.3
LINC00539-204ENST00000608957 NOD1Q9Y239 953 aa13.15□□□□□ -0.3
LINC00539-204ENST00000608957 STXBP5LQ9Y2K9 1186 aa13.15□□□□□ -0.3
LINC00539-204ENST00000608957 YBX2Q9Y2T7 364 aaKnown RBP13.15□□□□□ -0.3
LINC00539-204ENST00000608957 NOP56O00567 594 aaKnown RBP13.14□□□□□ -0.31
LINC00539-204ENST00000608957 TREHO43280 583 aa13.14□□□□□ -0.31
LINC00539-204ENST00000608957 EDIL3O43854 480 aa13.14□□□□□ -0.31
LINC00539-204ENST00000608957 JAK2O60674 1132 aa13.14□□□□□ -0.31
LINC00539-204ENST00000608957 NBNO60934 754 aa13.14□□□□□ -0.31
LINC00539-204ENST00000608957 CTDNEP1O95476 244 aa13.14□□□□□ -0.31
LINC00539-204ENST00000608957 RFC2P35250 354 aa13.14□□□□□ -0.31
LINC00539-204ENST00000608957 RABGGTBP53611 331 aa13.14□□□□□ -0.31
LINC00539-204ENST00000608957 ADAM17P78536 824 aa13.14□□□□□ -0.31
LINC00539-204ENST00000608957 ZNF618Q5T7W0 954 aa13.14□□□□□ -0.31
LINC00539-204ENST00000608957 LRRC8DQ7L1W4 858 aa13.14□□□□□ -0.31
LINC00539-204ENST00000608957 RETREG2Q8NC44 543 aa13.14□□□□□ -0.31
LINC00539-204ENST00000608957 RASGRP4Q8TDF6 673 aa13.14□□□□□ -0.31
LINC00539-204ENST00000608957 AFAP1L1Q8TED9 768 aa13.14□□□□□ -0.31
LINC00539-204ENST00000608957 PCYT2Q99447 389 aa13.14□□□□□ -0.31
LINC00539-204ENST00000608957 SLC26A6Q9BXS9 759 aa13.14□□□□□ -0.31
LINC00539-204ENST00000608957 RNF26Q9BY78 433 aaPredicted RBP13.14□□□□□ -0.31
LINC00539-204ENST00000608957 OSBPL7Q9BZF2 842 aa13.14□□□□□ -0.31
LINC00539-204ENST00000608957 TMEM265A0A087WTH1 108 aa13.13□□□□□ -0.31
LINC00539-204ENST00000608957 C17orf102A2RUQ5 167 aa13.13□□□□□ -0.31
LINC00539-204ENST00000608957 FAM86B1E9PN63 330 aa13.13□□□□□ -0.31
LINC00539-204ENST00000608957 CPLX1O14810 134 aa13.13□□□□□ -0.31
LINC00539-204ENST00000608957 DTNBO60941 627 aa13.13□□□□□ -0.31
LINC00539-204ENST00000608957 CDKL5O76039 1030 aa13.13□□□□□ -0.31
LINC00539-204ENST00000608957 FOSP01100 380 aaPredicted RBP13.13□□□□□ -0.31
LINC00539-204ENST00000608957 CXCL10P02778 98 aa13.13□□□□□ -0.31
LINC00539-204ENST00000608957 PFKMP08237 780 aa13.13□□□□□ -0.31
LINC00539-204ENST00000608957 FAM86B2P0C5J1 330 aa13.13□□□□□ -0.31
LINC00539-204ENST00000608957 MYOGP15173 224 aa13.13□□□□□ -0.31
LINC00539-204ENST00000608957 SELPP16109 830 aa13.13□□□□□ -0.31
LINC00539-204ENST00000608957 TCF7P36402 384 aaPredicted RBP13.13□□□□□ -0.31
LINC00539-204ENST00000608957 ARHGAP4P98171 946 aa13.13□□□□□ -0.31
LINC00539-204ENST00000608957 ITGB3BPQ13352 177 aaPredicted RBP13.13□□□□□ -0.31
LINC00539-204ENST00000608957 AP3B2Q13367 1082 aa13.13□□□□□ -0.31
LINC00539-204ENST00000608957 GRIN2CQ14957 1233 aa13.13□□□□□ -0.31
LINC00539-204ENST00000608957 CPLX2Q6PUV4 134 aaKnown RBP13.13□□□□□ -0.31
LINC00539-204ENST00000608957 SERINC5Q86VE9 423 aa13.13□□□□□ -0.31
LINC00539-204ENST00000608957 TEX2Q8IWB9 1127 aa13.13□□□□□ -0.31
LINC00539-204ENST00000608957 MYLIPQ8WY64 445 aa13.13□□□□□ -0.31
LINC00539-204ENST00000608957 TIFAQ96CG3 184 aa13.13□□□□□ -0.31
LINC00539-204ENST00000608957 CDHR1Q96JP9 859 aa13.13□□□□□ -0.31
LINC00539-204ENST00000608957 NKX2-4Q9H2Z4 354 aa13.13□□□□□ -0.31
LINC00539-204ENST00000608957 EHMT1Q9H9B1 1298 aa13.13□□□□□ -0.31
LINC00539-204ENST00000608957 KCNH7Q9NS40 1196 aa13.13□□□□□ -0.31
LINC00539-204ENST00000608957 SETD4Q9NVD3 440 aa13.13□□□□□ -0.31
LINC00539-204ENST00000608957 VPS54Q9P1Q0 977 aa13.13□□□□□ -0.31
LINC00539-204ENST00000608957 KIF3AQ9Y496 699 aa13.13□□□□□ -0.31
LINC00539-204ENST00000608957 IGLV3-22A0A075B6J6 115 aa13.12□□□□□ -0.31
LINC00539-204ENST00000608957 ZBBXA8MT70 800 aa13.12□□□□□ -0.31
LINC00539-204ENST00000608957 MEIS1O00470 390 aa13.12□□□□□ -0.31
LINC00539-204ENST00000608957 LGR5O75473 907 aa13.12□□□□□ -0.31
LINC00539-204ENST00000608957 BRD1O95696 1058 aa13.12□□□□□ -0.31
LINC00539-204ENST00000608957 PDCP20941 246 aa13.12□□□□□ -0.31
LINC00539-204ENST00000608957 PKP1Q13835 747 aa13.12□□□□□ -0.31
LINC00539-204ENST00000608957 CEP55Q53EZ4 464 aa13.12□□□□□ -0.31
LINC00539-204ENST00000608957 CCDC155Q8N6L0 562 aa13.12□□□□□ -0.31
LINC00539-204ENST00000608957 FAM184AQ8NB25 1140 aa13.12□□□□□ -0.31
LINC00539-204ENST00000608957 GIMAP8Q8ND71 665 aaPredicted RBP13.12□□□□□ -0.31
LINC00539-204ENST00000608957 LMBR1Q8WVP7 490 aa13.12□□□□□ -0.31
LINC00539-204ENST00000608957 SEPT1Q8WYJ6 367 aa13.12□□□□□ -0.31
LINC00539-204ENST00000608957 ATP6V0A1Q93050 837 aa13.12□□□□□ -0.31
LINC00539-204ENST00000608957 AIFM3Q96NN9 605 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms