RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 CUL5Q93034 780 aa7.27□□□□□ -1.25
CUX1-220ENST00000607092 INPP4AQ96PE3 977 aaPredicted RBP7.27□□□□□ -1.25
CUX1-220ENST00000607092 ZKSCAN3Q9BRR0 538 aa7.27□□□□□ -1.25
CUX1-220ENST00000607092 C16orf70Q9BSU1 422 aa7.27□□□□□ -1.25
CUX1-220ENST00000607092 OSBPL3Q9H4L5 887 aa7.27□□□□□ -1.25
CUX1-220ENST00000607092 C11orf16Q9NQ32 467 aa7.27□□□□□ -1.25
CUX1-220ENST00000607092 CLDND1Q9NY35 253 aa7.27□□□□□ -1.25
CUX1-220ENST00000607092 COL20A1Q9P218 1284 aa7.27□□□□□ -1.25
CUX1-220ENST00000607092 SQORQ9Y6N5 450 aa7.27□□□□□ -1.25
CUX1-220ENST00000607092 KIAA1217Q5T5P2 1943 aa7.27□□□□□ -1.25
CUX1-220ENST00000607092 SIP14410 1827 aa7.27□□□□□ -1.25
CUX1-220ENST00000607092 NEDD4P46934 1319 aa7.27□□□□□ -1.25
CUX1-220ENST00000607092 COL4A4P53420 1690 aaPredicted RBP7.26□□□□□ -1.25
CUX1-220ENST00000607092 PTPRZ1P23471 2315 aaPredicted RBP7.26□□□□□ -1.25
CUX1-220ENST00000607092 PNMA6FA0A0J9YX94 578 aa7.26□□□□□ -1.25
CUX1-220ENST00000607092 FAM86C2PA6NEL3 165 aa7.26□□□□□ -1.25
CUX1-220ENST00000607092 RRN3P2A6NIE6 340 aa7.26□□□□□ -1.25
CUX1-220ENST00000607092 C19orf67A6NJJ6 358 aa7.26□□□□□ -1.25
CUX1-220ENST00000607092 SPATA31C2B4DYI2 1134 aa7.26□□□□□ -1.25
CUX1-220ENST00000607092 B4E1Z4 1266 aa7.26□□□□□ -1.25
CUX1-220ENST00000607092 H3BQ06 376 aaPredicted RBP7.26□□□□□ -1.25
CUX1-220ENST00000607092 MAFGO15525 162 aa7.26□□□□□ -1.25
CUX1-220ENST00000607092 TREHO43280 583 aa7.26□□□□□ -1.25
CUX1-220ENST00000607092 PPP1R37O75864 691 aa7.26□□□□□ -1.25
CUX1-220ENST00000607092 UPP2O95045 317 aa7.26□□□□□ -1.25
CUX1-220ENST00000607092 STAG3L1P0CL83 205 aa7.26□□□□□ -1.25
CUX1-220ENST00000607092 SRGAP2BP0DMP2 458 aa7.26□□□□□ -1.25
CUX1-220ENST00000607092 IL9P15248 144 aa7.26□□□□□ -1.25
CUX1-220ENST00000607092 KIF5BP33176 963 aa7.26□□□□□ -1.25
CUX1-220ENST00000607092 BMPR1AP36894 532 aa7.26□□□□□ -1.25
CUX1-220ENST00000607092 ZP2Q05996 745 aa7.26□□□□□ -1.25
CUX1-220ENST00000607092 SMAD4Q13485 552 aaKnown RBP7.26□□□□□ -1.25
CUX1-220ENST00000607092 SMAD2Q15796 467 aaKnown RBP7.26□□□□□ -1.25
CUX1-220ENST00000607092 TCEAL5Q5H9L2 206 aa7.26□□□□□ -1.25
CUX1-220ENST00000607092 ODR4Q5SWX8 454 aa7.26□□□□□ -1.25
CUX1-220ENST00000607092 LIN28BQ6ZN17 250 aaKnown RBP eCLIP7.26□□□□□ -1.25
CUX1-220ENST00000607092 TMCO2Q7Z6W1 182 aaPredicted RBP7.26□□□□□ -1.25
CUX1-220ENST00000607092 RALYLQ86SE5 291 aaKnown RBP7.26□□□□□ -1.25
CUX1-220ENST00000607092 ALYREFQ86V81 257 aaKnown RBP7.26□□□□□ -1.25
CUX1-220ENST00000607092 PPP1R13LQ8WUF5 828 aa7.26□□□□□ -1.25
CUX1-220ENST00000607092 RUFY2Q8WXA3 655 aa7.26□□□□□ -1.25
CUX1-220ENST00000607092 CLP1Q92989 425 aaKnown RBP7.26□□□□□ -1.25
CUX1-220ENST00000607092 P2RX5Q93086 422 aa7.26□□□□□ -1.25
CUX1-220ENST00000607092 MTMR8Q96EF0 704 aa7.26□□□□□ -1.25
CUX1-220ENST00000607092 LZTS2Q9BRK4 669 aa7.26□□□□□ -1.25
CUX1-220ENST00000607092 RNPEPQ9H4A4 650 aa7.26□□□□□ -1.25
CUX1-220ENST00000607092 EHMT1Q9H9B1 1298 aa7.26□□□□□ -1.25
CUX1-220ENST00000607092 ERAP1Q9NZ08 941 aa7.26□□□□□ -1.25
CUX1-220ENST00000607092 ZSWIM5Q9P217 1185 aa7.26□□□□□ -1.25
CUX1-220ENST00000607092 MICAL3Q7RTP6 2002 aa7.26□□□□□ -1.25
CUX1-220ENST00000607092 FRMPD4Q14CM0 1322 aa7.26□□□□□ -1.25
CUX1-220ENST00000607092 ADGRA3Q8IWK6 1321 aa7.26□□□□□ -1.25
CUX1-220ENST00000607092 ZNF318Q5VUA4 2279 aa7.25□□□□□ -1.25
CUX1-220ENST00000607092 PALM3A6NDB9 673 aaPredicted RBP7.25□□□□□ -1.25
CUX1-220ENST00000607092 M0QZ92 97 aa7.25□□□□□ -1.25
CUX1-220ENST00000607092 RGS20O76081 388 aa7.25□□□□□ -1.25
CUX1-220ENST00000607092 MMP1P03956 469 aa7.25□□□□□ -1.25
CUX1-220ENST00000607092 CTSHP09668 335 aa7.25□□□□□ -1.25
CUX1-220ENST00000607092 SMARCA1P28370 1054 aa7.25□□□□□ -1.25
CUX1-220ENST00000607092 MRE11P49959 708 aa7.25□□□□□ -1.25
CUX1-220ENST00000607092 GNAQP50148 359 aa7.25□□□□□ -1.25
CUX1-220ENST00000607092 PTPN5P54829 565 aa7.25□□□□□ -1.25
CUX1-220ENST00000607092 ARHGAP4P98171 946 aa7.25□□□□□ -1.25
CUX1-220ENST00000607092 ZNF200P98182 395 aaPredicted RBP7.25□□□□□ -1.25
CUX1-220ENST00000607092 NHLH1Q02575 133 aa7.25□□□□□ -1.25
CUX1-220ENST00000607092 BTG3Q14201 252 aaPredicted RBP7.25□□□□□ -1.25
CUX1-220ENST00000607092 CTC1Q2NKJ3 1217 aa7.25□□□□□ -1.25
CUX1-220ENST00000607092 HERC4Q5GLZ8 1057 aaPredicted RBP7.25□□□□□ -1.25
CUX1-220ENST00000607092 IER5Q5VY09 327 aa7.25□□□□□ -1.25
CUX1-220ENST00000607092 CWC27Q6UX04 472 aaKnown RBP7.25□□□□□ -1.25
CUX1-220ENST00000607092 BMP8AQ7Z5Y6 402 aa7.25□□□□□ -1.25
CUX1-220ENST00000607092 SPRED2Q7Z698 418 aa7.25□□□□□ -1.25
CUX1-220ENST00000607092 CATIPQ7Z7H3 387 aa7.25□□□□□ -1.25
CUX1-220ENST00000607092 FCHSD1Q86WN1 690 aa7.25□□□□□ -1.25
CUX1-220ENST00000607092 HOMER1Q86YM7 354 aa7.25□□□□□ -1.25
CUX1-220ENST00000607092 SUGP1Q8IWZ8 645 aaKnown RBP7.25□□□□□ -1.25
CUX1-220ENST00000607092 EFCAB3Q8N7B9 438 aa7.25□□□□□ -1.25
CUX1-220ENST00000607092 SMARCC2Q8TAQ2 1214 aa7.25□□□□□ -1.25
CUX1-220ENST00000607092 KHSRPQ92945 711 aaKnown RBP eCLIP7.25□□□□□ -1.252e-12■■■■□ 20.7
CUX1-220ENST00000607092 GPRASP2Q96D09 838 aa7.25□□□□□ -1.25
CUX1-220ENST00000607092 MAP3K14Q99558 947 aa7.25□□□□□ -1.25
CUX1-220ENST00000607092 GPR20Q99678 358 aa7.25□□□□□ -1.25
CUX1-220ENST00000607092 MTA3Q9BTC8 594 aa7.25□□□□□ -1.25
CUX1-220ENST00000607092 CPVLQ9H3G5 476 aa7.25□□□□□ -1.25
CUX1-220ENST00000607092 RIOX1Q9H6W3 641 aa7.25□□□□□ -1.25
CUX1-220ENST00000607092 CD320Q9NPF0 282 aa7.25□□□□□ -1.25
CUX1-220ENST00000607092 SEC63Q9UGP8 760 aaKnown RBP7.25□□□□□ -1.25
CUX1-220ENST00000607092 MAD2L2Q9UI95 211 aa7.25□□□□□ -1.25
CUX1-220ENST00000607092 CD207Q9UJ71 328 aa7.25□□□□□ -1.25
CUX1-220ENST00000607092 TRIOO75962 3097 aa7.24□□□□□ -1.25
CUX1-220ENST00000607092 MYO7AQ13402 2215 aa7.24□□□□□ -1.25
CUX1-220ENST00000607092 CACNA1AO00555 2505 aa7.24□□□□□ -1.25
CUX1-220ENST00000607092 LOC101059915A0A1B0GWI6 518 aaPredicted RBP7.24□□□□□ -1.25
CUX1-220ENST00000607092 PIK3CDO00329 1044 aa7.24□□□□□ -1.25
CUX1-220ENST00000607092 OPLAHO14841 1288 aa7.24□□□□□ -1.25
CUX1-220ENST00000607092 IFIT3O14879 490 aaKnown RBP7.24□□□□□ -1.25
CUX1-220ENST00000607092 MAP3K13O43283 966 aa7.24□□□□□ -1.25
CUX1-220ENST00000607092 HOXA13P31271 388 aaPredicted RBP7.24□□□□□ -1.25
CUX1-220ENST00000607092 NDUFV1P49821 464 aa7.24□□□□□ -1.25
CUX1-220ENST00000607092 RRP1P56182 461 aaKnown RBP7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms