RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 ACTR2P61160 394 aa16.14■□□□□ 0.17
UPF1-211ENST00000600868 EPHA7Q15375 998 aa16.14■□□□□ 0.17
UPF1-211ENST00000600868 NCAPH2Q6IBW4 605 aa16.14■□□□□ 0.17
UPF1-211ENST00000600868 MIER3Q7Z3K6 550 aa16.14■□□□□ 0.17
UPF1-211ENST00000600868 TLK2Q86UE8 772 aa16.14■□□□□ 0.17
UPF1-211ENST00000600868 OR6J1Q8NGC5 347 aa16.14■□□□□ 0.17
UPF1-211ENST00000600868 PPTC7Q8NI37 304 aa16.14■□□□□ 0.17
UPF1-211ENST00000600868 ERMNQ8TAM6 284 aa16.14■□□□□ 0.17
UPF1-211ENST00000600868 SEPT1Q8WYJ6 367 aa16.14■□□□□ 0.17
UPF1-211ENST00000600868 SPATA33Q96N06 139 aa16.14■□□□□ 0.17
UPF1-211ENST00000600868 CCSER1Q9C0I3 900 aa16.14■□□□□ 0.17
UPF1-211ENST00000600868 DISC1Q9NRI5 854 aa16.14■□□□□ 0.17
UPF1-211ENST00000600868 PCDHA10Q9Y5I2 948 aa16.14■□□□□ 0.17
UPF1-211ENST00000600868 GSTTP1A0A1W2PQM5 241 aa16.13■□□□□ 0.17
UPF1-211ENST00000600868 POTEFA5A3E0 1075 aa16.13■□□□□ 0.17
UPF1-211ENST00000600868 GOLGA6L4A6NEF3 574 aa16.13■□□□□ 0.17
UPF1-211ENST00000600868 NOP56O00567 594 aaKnown RBP16.13■□□□□ 0.17
UPF1-211ENST00000600868 DYNC1LI2O43237 492 aaPredicted RBP16.13■□□□□ 0.17
UPF1-211ENST00000600868 PRPF40AO75400 957 aaKnown RBP16.13■□□□□ 0.17
UPF1-211ENST00000600868 RARBP10826 455 aa16.13■□□□□ 0.17
UPF1-211ENST00000600868 NKX3-2P78367 333 aa16.13■□□□□ 0.17
UPF1-211ENST00000600868 HSDL1Q3SXM5 330 aa16.13■□□□□ 0.17
UPF1-211ENST00000600868 RESP18Q5W5W9 173 aa16.13■□□□□ 0.17
UPF1-211ENST00000600868 SHC4Q6S5L8 630 aa16.13■□□□□ 0.17
UPF1-211ENST00000600868 ABHD15Q6UXT9 468 aa16.13■□□□□ 0.17
UPF1-211ENST00000600868 ARMC5Q96C12 935 aa16.13■□□□□ 0.17
UPF1-211ENST00000600868 GPR20Q99678 358 aa16.13■□□□□ 0.17
UPF1-211ENST00000600868 AP5M1Q9H0R1 490 aa16.13■□□□□ 0.17
UPF1-211ENST00000600868 UPF3AQ9H1J1 476 aaKnown RBP16.13■□□□□ 0.17
UPF1-211ENST00000600868 LMBRD1Q9NUN5 540 aa16.13■□□□□ 0.17
UPF1-211ENST00000600868 DDX20Q9UHI6 824 aaKnown RBP16.13■□□□□ 0.17
UPF1-211ENST00000600868 HTTP42858 3142 aa16.12■□□□□ 0.17
UPF1-211ENST00000600868 A6NJR5 290 aa16.12■□□□□ 0.17
UPF1-211ENST00000600868 PP2D1A8MPX8 630 aa16.12■□□□□ 0.17
UPF1-211ENST00000600868 PSAPP07602 524 aa16.12■□□□□ 0.17
UPF1-211ENST00000600868 SUPT20HL2P0C7V6 817 aa16.12■□□□□ 0.17
UPF1-211ENST00000600868 HOXD8P13378 290 aaPredicted RBP16.12■□□□□ 0.17
UPF1-211ENST00000600868 PTGS1P23219 599 aa16.12■□□□□ 0.17
UPF1-211ENST00000600868 MCM4P33991 863 aa16.12■□□□□ 0.17
UPF1-211ENST00000600868 UBA7P41226 1012 aa16.12■□□□□ 0.17
UPF1-211ENST00000600868 GJA9P57773 515 aa16.12■□□□□ 0.17
UPF1-211ENST00000600868 UBE2HP62256 183 aa16.12■□□□□ 0.17
UPF1-211ENST00000600868 SP4Q02446 784 aa16.12■□□□□ 0.17
UPF1-211ENST00000600868 SPECC1Q5M775 1068 aa16.12■□□□□ 0.17
UPF1-211ENST00000600868 KRT79Q5XKE5 535 aa16.12■□□□□ 0.17
UPF1-211ENST00000600868 HAUS3Q68CZ6 603 aa16.12■□□□□ 0.17
UPF1-211ENST00000600868 MIS18BP1Q6P0N0 1132 aa16.12■□□□□ 0.17
UPF1-211ENST00000600868 USP49Q70CQ1 688 aa16.12■□□□□ 0.17
UPF1-211ENST00000600868 NEK9Q8TD19 979 aa16.12■□□□□ 0.17
UPF1-211ENST00000600868 AFG1LQ8WV93 481 aa16.12■□□□□ 0.17
UPF1-211ENST00000600868 SYMPKQ92797 1274 aaKnown RBP16.12■□□□□ 0.17
UPF1-211ENST00000600868 LENG1Q96BZ8 264 aaPredicted RBP16.12■□□□□ 0.17
UPF1-211ENST00000600868 EPSTI1Q96J88 318 aa16.12■□□□□ 0.17
UPF1-211ENST00000600868 HSD17B14Q9BPX1 270 aa16.12■□□□□ 0.17
UPF1-211ENST00000600868 EIF2AK1Q9BQI3 630 aaKnown RBP16.12■□□□□ 0.17
UPF1-211ENST00000600868 MMTAG2Q9BU76 263 aaKnown RBP16.12■□□□□ 0.17
UPF1-211ENST00000600868 POLR3CQ9BUI4 534 aaPredicted RBP16.12■□□□□ 0.17
UPF1-211ENST00000600868 TELO2Q9Y4R8 837 aa16.12■□□□□ 0.17
UPF1-211ENST00000600868 SAMM50Q9Y512 469 aa16.12■□□□□ 0.17
UPF1-211ENST00000600868 IGKV6D-21A0A0A0MT36 114 aa16.11■□□□□ 0.17
UPF1-211ENST00000600868 FAM237AA0A1B0GTK4 181 aa16.11■□□□□ 0.17
UPF1-211ENST00000600868 GADD45BO75293 160 aaPredicted RBP16.11■□□□□ 0.17
UPF1-211ENST00000600868 PPFIA4O75335 1185 aa16.11■□□□□ 0.17
UPF1-211ENST00000600868 P4HBP07237 508 aaKnown RBP16.11■□□□□ 0.17
UPF1-211ENST00000600868 MUTP22033 750 aa16.11■□□□□ 0.17
UPF1-211ENST00000600868 RPA1P27694 616 aa16.11■□□□□ 0.17
UPF1-211ENST00000600868 CDC25AP30304 524 aa16.11■□□□□ 0.17
UPF1-211ENST00000600868 TXLNAP40222 546 aa16.11■□□□□ 0.17
UPF1-211ENST00000600868 CABP7Q86V35 215 aa16.11■□□□□ 0.17
UPF1-211ENST00000600868 SNX29Q8TEQ0 813 aa16.11■□□□□ 0.17
UPF1-211ENST00000600868 MRPS27Q92552 414 aaKnown RBP16.11■□□□□ 0.17
UPF1-211ENST00000600868 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.11■□□□□ 0.17
UPF1-211ENST00000600868 SPC25Q9HBM1 224 aa16.11■□□□□ 0.17
UPF1-211ENST00000600868 TUFT1Q9NNX1 390 aa16.11■□□□□ 0.17
UPF1-211ENST00000600868 PAK6Q9NQU5 681 aaPredicted RBP16.11■□□□□ 0.17
UPF1-211ENST00000600868 FAM13BQ9NYF5 915 aa16.11■□□□□ 0.17
UPF1-211ENST00000600868 CTAGE5O15320 804 aa16.1■□□□□ 0.17
UPF1-211ENST00000600868 LGR5O75473 907 aa16.1■□□□□ 0.17
UPF1-211ENST00000600868 SLITRK3O94933 977 aa16.1■□□□□ 0.17
UPF1-211ENST00000600868 MMP3P08254 477 aa16.1■□□□□ 0.17
UPF1-211ENST00000600868 SPATA31C1P0DKV0 1188 aa16.1■□□□□ 0.17
UPF1-211ENST00000600868 TCF7P36402 384 aaPredicted RBP16.1■□□□□ 0.17
UPF1-211ENST00000600868 CCT6AP40227 531 aaKnown RBP16.1■□□□□ 0.17
UPF1-211ENST00000600868 CPT1AP50416 773 aa16.1■□□□□ 0.17
UPF1-211ENST00000600868 FSCN1Q16658 493 aaKnown RBP16.1■□□□□ 0.17
UPF1-211ENST00000600868 DGKDQ16760 1214 aa16.1■□□□□ 0.17
UPF1-211ENST00000600868 BRDTQ58F21 947 aaPredicted RBP16.1■□□□□ 0.17
UPF1-211ENST00000600868 HYIQ5T013 277 aa16.1■□□□□ 0.17
UPF1-211ENST00000600868 LHX8Q68G74 356 aa16.1■□□□□ 0.17
UPF1-211ENST00000600868 FSIP1Q8NA03 581 aa16.1■□□□□ 0.17
UPF1-211ENST00000600868 DYDC2Q96IM9 177 aa16.1■□□□□ 0.17
UPF1-211ENST00000600868 ZNF333Q96JL9 665 aa16.1■□□□□ 0.17
UPF1-211ENST00000600868 UNC93B1Q9H1C4 597 aa16.1■□□□□ 0.17
UPF1-211ENST00000600868 XPNPEP3Q9NQH7 507 aa16.1■□□□□ 0.17
UPF1-211ENST00000600868 RGL1Q9NZL6 768 aa16.1■□□□□ 0.17
UPF1-211ENST00000600868 CCDC39Q9UFE4 941 aa16.1■□□□□ 0.17
UPF1-211ENST00000600868 HPSEQ9Y251 543 aa16.1■□□□□ 0.17
UPF1-211ENST00000600868 SYNRGQ9UMZ2 1314 aa16.1■□□□□ 0.17
UPF1-211ENST00000600868 KDM3AQ9Y4C1 1321 aa16.1■□□□□ 0.17
UPF1-211ENST00000600868 DDX11L8A8MPP1 907 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms