RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 TMTC3Q6ZXV5 915 aa20.18■□□□□ 0.82
SHKBP1-223ENST00000600552 GIMAP8Q8ND71 665 aaPredicted RBP20.18■□□□□ 0.82
SHKBP1-223ENST00000600552 LMBR1Q8WVP7 490 aa20.18■□□□□ 0.82
SHKBP1-223ENST00000600552 GLG1Q92896 1179 aa20.18■□□□□ 0.82
SHKBP1-223ENST00000600552 HLA-CQ95604 372 aa20.18■□□□□ 0.82
SHKBP1-223ENST00000600552 C17orf80Q9BSJ5 609 aa20.18■□□□□ 0.82
SHKBP1-223ENST00000600552 MTA3Q9BTC8 594 aa20.18■□□□□ 0.82
SHKBP1-223ENST00000600552 PCDHA6Q9UN73 950 aa20.18■□□□□ 0.82
SHKBP1-223ENST00000600552 INSL6Q9Y581 213 aa20.18■□□□□ 0.82
SHKBP1-223ENST00000600552 PCDHA8Q9Y5H6 950 aa20.18■□□□□ 0.82
SHKBP1-223ENST00000600552 COL4A4P53420 1690 aaPredicted RBP20.17■□□□□ 0.82
SHKBP1-223ENST00000600552 ERVK-21P61565 698 aa20.17■□□□□ 0.82
SHKBP1-223ENST00000600552 IGBP1P78318 339 aa20.17■□□□□ 0.82
SHKBP1-223ENST00000600552 GPRASP2Q96D09 838 aa20.17■□□□□ 0.82
SHKBP1-223ENST00000600552 YME1L1Q96TA2 773 aa20.17■□□□□ 0.82
SHKBP1-223ENST00000600552 SENP7Q9BQF6 1050 aa20.17■□□□□ 0.82
SHKBP1-223ENST00000600552 COG5Q9UP83 839 aa20.17■□□□□ 0.82
SHKBP1-223ENST00000600552 MICAL3Q7RTP6 2002 aa20.17■□□□□ 0.82
SHKBP1-223ENST00000600552 TRANK1O15050 2925 aa20.16■□□□□ 0.82
SHKBP1-223ENST00000600552 ITGB5P18084 799 aa20.16■□□□□ 0.82
SHKBP1-223ENST00000600552 PPFIA1Q13136 1202 aa20.16■□□□□ 0.82
SHKBP1-223ENST00000600552 MTMR1Q13613 665 aa20.16■□□□□ 0.82
SHKBP1-223ENST00000600552 RNF20Q5VTR2 975 aa20.16■□□□□ 0.82
SHKBP1-223ENST00000600552 RUFY4Q6ZNE9 571 aa20.16■□□□□ 0.82
SHKBP1-223ENST00000600552 FBXO22Q8NEZ5 403 aa20.16■□□□□ 0.82
SHKBP1-223ENST00000600552 SEPT1Q8WYJ6 367 aa20.16■□□□□ 0.82
SHKBP1-223ENST00000600552 CDHR1Q96JP9 859 aa20.16■□□□□ 0.82
SHKBP1-223ENST00000600552 PGBD1Q96JS3 809 aa20.16■□□□□ 0.82
SHKBP1-223ENST00000600552 NEK1Q96PY6 1258 aa20.16■□□□□ 0.82
SHKBP1-223ENST00000600552 REV3LO60673 3130 aa20.16■□□□□ 0.82
SHKBP1-223ENST00000600552 GSTTP1A0A1W2PQM5 241 aa20.15■□□□□ 0.82
SHKBP1-223ENST00000600552 KCNA2P16389 499 aa20.15■□□□□ 0.82
SHKBP1-223ENST00000600552 HOXC8P31273 242 aa20.15■□□□□ 0.82
SHKBP1-223ENST00000600552 NAPAP54920 295 aa20.15■□□□□ 0.82
SHKBP1-223ENST00000600552 EHMT1Q9H9B1 1298 aa20.15■□□□□ 0.82
SHKBP1-223ENST00000600552 UBIAD1Q9Y5Z9 338 aa20.15■□□□□ 0.82
SHKBP1-223ENST00000600552 NCOR1O75376 2440 aa20.14■□□□□ 0.82
SHKBP1-223ENST00000600552 GHRP10912 638 aa20.14■□□□□ 0.81
SHKBP1-223ENST00000600552 GRIK4Q16099 956 aa20.14■□□□□ 0.81
SHKBP1-223ENST00000600552 RTN1Q16799 776 aa20.14■□□□□ 0.81
SHKBP1-223ENST00000600552 WWC2Q6AWC2 1192 aa20.14■□□□□ 0.81
SHKBP1-223ENST00000600552 ZBTB10Q96DT7 871 aa20.14■□□□□ 0.81
SHKBP1-223ENST00000600552 IFIH1Q9BYX4 1025 aaKnown RBP20.14■□□□□ 0.81
SHKBP1-223ENST00000600552 JADE2Q9NQC1 790 aa20.14■□□□□ 0.81
SHKBP1-223ENST00000600552 V9GY48 417 aaPredicted RBP20.14■□□□□ 0.81
SHKBP1-223ENST00000600552 NRCAMQ92823 1304 aa20.13■□□□□ 0.81
SHKBP1-223ENST00000600552 ZBTB43O43298 467 aa20.13■□□□□ 0.81
SHKBP1-223ENST00000600552 CAND2O75155 1236 aa20.13■□□□□ 0.81
SHKBP1-223ENST00000600552 FGD1P98174 961 aa20.13■□□□□ 0.81
SHKBP1-223ENST00000600552 DNAJB3Q8WWF6 145 aa20.13■□□□□ 0.81
SHKBP1-223ENST00000600552 FAM49AQ9H0Q0 323 aaPredicted RBP20.13■□□□□ 0.81
SHKBP1-223ENST00000600552 ERAP1Q9NZ08 941 aa20.13■□□□□ 0.81
SHKBP1-223ENST00000600552 RAPGEFL1Q9UHV5 662 aa20.13■□□□□ 0.81
SHKBP1-223ENST00000600552 BRPF3Q9ULD4 1205 aa20.13■□□□□ 0.81
SHKBP1-223ENST00000600552 SIP14410 1827 aa20.12■□□□□ 0.81
SHKBP1-223ENST00000600552 LOC101059915A0A1B0GWI6 518 aaPredicted RBP20.12■□□□□ 0.81
SHKBP1-223ENST00000600552 GOLGA8AA7E2F4 631 aa20.12■□□□□ 0.81
SHKBP1-223ENST00000600552 GOLGA8BA8MQT2 603 aa20.12■□□□□ 0.81
SHKBP1-223ENST00000600552 CHRNA1P02708 482 aa20.12■□□□□ 0.81
SHKBP1-223ENST00000600552 COL9A1P20849 921 aa20.12■□□□□ 0.81
SHKBP1-223ENST00000600552 APOA5Q6Q788 366 aa20.12■□□□□ 0.81
SHKBP1-223ENST00000600552 EP400NLQ6ZTU2 488 aa20.12■□□□□ 0.81
SHKBP1-223ENST00000600552 RSPH3Q86UC2 560 aa20.12■□□□□ 0.81
SHKBP1-223ENST00000600552 SGMS1Q86VZ5 419 aa20.12■□□□□ 0.81
SHKBP1-223ENST00000600552 CYP2W1Q8TAV3 490 aa20.12■□□□□ 0.81
SHKBP1-223ENST00000600552 TOP1MTQ969P6 601 aa20.12■□□□□ 0.81
SHKBP1-223ENST00000600552 UIMC1Q96RL1 719 aa20.12■□□□□ 0.81
SHKBP1-223ENST00000600552 SMARCAD1Q9H4L7 1026 aa20.12■□□□□ 0.81
SHKBP1-223ENST00000600552 RBM28Q9NW13 759 aaKnown RBP20.12■□□□□ 0.81
SHKBP1-223ENST00000600552 LMCD1Q9NZU5 365 aa20.12■□□□□ 0.81
SHKBP1-223ENST00000600552 TUBE1Q9UJT0 475 aa20.12■□□□□ 0.81
SHKBP1-223ENST00000600552 KLF18A0A0U1RQI7 1052 aa20.11■□□□□ 0.81
SHKBP1-223ENST00000600552 IBSPP21815 317 aaPredicted RBP20.11■□□□□ 0.81
SHKBP1-223ENST00000600552 ZNF76P36508 570 aa20.11■□□□□ 0.81
SHKBP1-223ENST00000600552 ADCY7P51828 1080 aa20.11■□□□□ 0.81
SHKBP1-223ENST00000600552 ADAM17P78536 824 aa20.11■□□□□ 0.81
SHKBP1-223ENST00000600552 HTRA4P83105 476 aaPredicted RBP20.11■□□□□ 0.81
SHKBP1-223ENST00000600552 GPM6BQ13491 265 aa20.11■□□□□ 0.81
SHKBP1-223ENST00000600552 ADCK5Q3MIX3 580 aa20.11■□□□□ 0.81
SHKBP1-223ENST00000600552 EPC2Q52LR7 807 aa20.11■□□□□ 0.81
SHKBP1-223ENST00000600552 BMP2KLQ5H9B9 411 aa20.11■□□□□ 0.81
SHKBP1-223ENST00000600552 DHX32Q7L7V1 743 aaKnown RBP20.11■□□□□ 0.81
SHKBP1-223ENST00000600552 RASEFQ8IZ41 740 aa20.11■□□□□ 0.81
SHKBP1-223ENST00000600552 AZI2Q9H6S1 392 aa20.11■□□□□ 0.81
SHKBP1-223ENST00000600552 JPH1Q9HDC5 661 aaPredicted RBP20.11■□□□□ 0.81
SHKBP1-223ENST00000600552 TMEM260Q9NX78 707 aa20.11■□□□□ 0.81
SHKBP1-223ENST00000600552 TRPC6Q9Y210 931 aa20.11■□□□□ 0.81
SHKBP1-223ENST00000600552 CNTNAP5Q8WYK1 1306 aa20.1■□□□□ 0.81
SHKBP1-223ENST00000600552 SMCO2A6NFE2 343 aa20.1■□□□□ 0.81
SHKBP1-223ENST00000600552 DDX39AO00148 427 aaKnown RBP20.1■□□□□ 0.81
SHKBP1-223ENST00000600552 CSPG5O95196 566 aa20.1■□□□□ 0.81
SHKBP1-223ENST00000600552 ARP10275 920 aa20.1■□□□□ 0.81
SHKBP1-223ENST00000600552 CPA1P15085 419 aa20.1■□□□□ 0.81
SHKBP1-223ENST00000600552 EXOSC10Q01780 885 aaKnown RBP20.1■□□□□ 0.81
SHKBP1-223ENST00000600552 TMEM62Q0P6H9 643 aa20.1■□□□□ 0.81
SHKBP1-223ENST00000600552 MKRN4PQ13434 485 aaPredicted RBP20.1■□□□□ 0.81
SHKBP1-223ENST00000600552 FAM26DQ5JW98 314 aa20.1■□□□□ 0.81
SHKBP1-223ENST00000600552 TYW1BQ6NUM6 668 aa20.1■□□□□ 0.81
SHKBP1-223ENST00000600552 CENPQQ7L2Z9 268 aaPredicted RBP20.1■□□□□ 0.81
SHKBP1-223ENST00000600552 APBB2Q92870 758 aa20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms