RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 GJC2Q5T442 439 aaPredicted RBP11.78□□□□□ -0.52
VPS4B-204ENST00000589604 SH3RF1Q7Z6J0 888 aa11.78□□□□□ -0.52
VPS4B-204ENST00000589604 ERCC4Q92889 916 aaPredicted RBP11.78□□□□□ -0.52
VPS4B-204ENST00000589604 IWS1Q96ST2 819 aa11.78□□□□□ -0.52
VPS4B-204ENST00000589604 BCAS3Q9H6U6 928 aa11.78□□□□□ -0.52
VPS4B-204ENST00000589604 FRMPD3Q5JV73 1810 aa11.77□□□□□ -0.52
VPS4B-204ENST00000589604 ITGB5P18084 799 aa11.77□□□□□ -0.53
VPS4B-204ENST00000589604 ADCYAP1R1P41586 468 aa11.77□□□□□ -0.53
VPS4B-204ENST00000589604 PDIA5Q14554 519 aa11.77□□□□□ -0.53
VPS4B-204ENST00000589604 CCDC144BQ3MJ40 725 aa11.77□□□□□ -0.53
VPS4B-204ENST00000589604 PCNX4Q63HM2 1172 aa11.77□□□□□ -0.53
VPS4B-204ENST00000589604 PDILTQ8N807 584 aa11.77□□□□□ -0.53
VPS4B-204ENST00000589604 ABHD8Q96I13 439 aa11.77□□□□□ -0.53
VPS4B-204ENST00000589604 AK8Q96MA6 479 aa11.77□□□□□ -0.53
VPS4B-204ENST00000589604 SDF4Q9BRK5 362 aa11.77□□□□□ -0.53
VPS4B-204ENST00000589604 RBSNQ9H1K0 784 aa11.77□□□□□ -0.53
VPS4B-204ENST00000589604 PAK6Q9NQU5 681 aaPredicted RBP11.77□□□□□ -0.53
VPS4B-204ENST00000589604 ZHX1Q9UKY1 873 aaPredicted RBP11.77□□□□□ -0.53
VPS4B-204ENST00000589604 LOC102724159A0A0B4J2E5 919 aa11.76□□□□□ -0.53
VPS4B-204ENST00000589604 RBM47A0AV96 593 aaKnown RBP11.76□□□□□ -0.53
VPS4B-204ENST00000589604 MEIS1O00470 390 aa11.76□□□□□ -0.53
VPS4B-204ENST00000589604 TBX3O15119 743 aa11.76□□□□□ -0.53
VPS4B-204ENST00000589604 MSH4O15457 936 aa11.76□□□□□ -0.53
VPS4B-204ENST00000589604 SLFN14P0C7P3 912 aa11.76□□□□□ -0.53
VPS4B-204ENST00000589604 CCND2P30279 289 aa11.76□□□□□ -0.53
VPS4B-204ENST00000589604 SP2Q02086 613 aa11.76□□□□□ -0.53
VPS4B-204ENST00000589604 SPIRE1Q08AE8 756 aa11.76□□□□□ -0.53
VPS4B-204ENST00000589604 PWP2Q15269 919 aaKnown RBP11.76□□□□□ -0.53
VPS4B-204ENST00000589604 STXBP2Q15833 593 aa11.76□□□□□ -0.53
VPS4B-204ENST00000589604 PRR16Q569H4 304 aa11.76□□□□□ -0.53
VPS4B-204ENST00000589604 NAALADL2Q58DX5 795 aa11.76□□□□□ -0.53
VPS4B-204ENST00000589604 LHX8Q68G74 356 aa11.76□□□□□ -0.53
VPS4B-204ENST00000589604 PDXDC2PQ6P474 469 aa11.76□□□□□ -0.53
VPS4B-204ENST00000589604 SEPT14Q6ZU15 432 aa11.76□□□□□ -0.53
VPS4B-204ENST00000589604 UIMC1Q96RL1 719 aa11.76□□□□□ -0.53
VPS4B-204ENST00000589604 MTRQ99707 1265 aa11.76□□□□□ -0.53
VPS4B-204ENST00000589604 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.76□□□□□ -0.53
VPS4B-204ENST00000589604 KDM4CQ9H3R0 1056 aa11.76□□□□□ -0.53
VPS4B-204ENST00000589604 ABHD16BQ9H3Z7 469 aa11.76□□□□□ -0.53
VPS4B-204ENST00000589604 TTC12Q9H892 705 aaPredicted RBP11.76□□□□□ -0.53
VPS4B-204ENST00000589604 KIAA1468Q9P260 1216 aa11.76□□□□□ -0.53
VPS4B-204ENST00000589604 TELO2Q9Y4R8 837 aa11.76□□□□□ -0.53
VPS4B-204ENST00000589604 DOCK5Q9H7D0 1870 aa11.76□□□□□ -0.53
VPS4B-204ENST00000589604 EIF3JO75822 258 aaKnown RBP11.75□□□□□ -0.53
VPS4B-204ENST00000589604 PRR29P0C7W0 189 aa11.75□□□□□ -0.53
VPS4B-204ENST00000589604 SMPD1P17405 629 aa11.75□□□□□ -0.53
VPS4B-204ENST00000589604 CNGA1P29973 690 aa11.75□□□□□ -0.53
VPS4B-204ENST00000589604 TYRO3Q06418 890 aa11.75□□□□□ -0.53
VPS4B-204ENST00000589604 PNOCQ13519 176 aa11.75□□□□□ -0.53
VPS4B-204ENST00000589604 KARSQ15046 597 aaKnown RBP11.75□□□□□ -0.53
VPS4B-204ENST00000589604 CEP55Q53EZ4 464 aa11.75□□□□□ -0.53
VPS4B-204ENST00000589604 CCDC62Q6P9F0 684 aa11.75□□□□□ -0.53
VPS4B-204ENST00000589604 GRAMD1CQ8IYS0 662 aa11.75□□□□□ -0.53
VPS4B-204ENST00000589604 CNNM3Q8NE01 707 aa11.75□□□□□ -0.53
VPS4B-204ENST00000589604 COPS5Q92905 334 aa11.75□□□□□ -0.53
VPS4B-204ENST00000589604 DHX58Q96C10 678 aa11.75□□□□□ -0.53
VPS4B-204ENST00000589604 INPP4AQ96PE3 977 aaPredicted RBP11.75□□□□□ -0.53
VPS4B-204ENST00000589604 WDR11Q9BZH6 1224 aa11.75□□□□□ -0.53
VPS4B-204ENST00000589604 RNF208Q9H0X6 261 aa11.75□□□□□ -0.53
VPS4B-204ENST00000589604 TSPY26PQ9H489 355 aa11.75□□□□□ -0.53
VPS4B-204ENST00000589604 EHMT1Q9H9B1 1298 aa11.75□□□□□ -0.53
VPS4B-204ENST00000589604 HMX1Q9NP08 348 aaPredicted RBP11.75□□□□□ -0.53
VPS4B-204ENST00000589604 VTA1Q9NP79 307 aa11.75□□□□□ -0.53
VPS4B-204ENST00000589604 TUBE1Q9UJT0 475 aa11.75□□□□□ -0.53
VPS4B-204ENST00000589604 UBIAD1Q9Y5Z9 338 aa11.75□□□□□ -0.53
VPS4B-204ENST00000589604 A0A087WWV3 80 aa11.75□□□□□ -0.53
VPS4B-204ENST00000589604 GOLGA6L3A6NEY3 463 aa11.75□□□□□ -0.53
VPS4B-204ENST00000589604 POTEMA6NI47 508 aa11.75□□□□□ -0.53
VPS4B-204ENST00000589604 SEPT4O43236 478 aa11.75□□□□□ -0.53
VPS4B-204ENST00000589604 ARP10275 920 aa11.75□□□□□ -0.53
VPS4B-204ENST00000589604 GRB10Q13322 594 aa11.75□□□□□ -0.53
VPS4B-204ENST00000589604 LY6KQ17RY6 165 aa11.75□□□□□ -0.53
VPS4B-204ENST00000589604 CABP7Q86V35 215 aa11.75□□□□□ -0.53
VPS4B-204ENST00000589604 SPATA20Q8TB22 786 aa11.75□□□□□ -0.53
VPS4B-204ENST00000589604 SLC5A5Q92911 643 aa11.75□□□□□ -0.53
VPS4B-204ENST00000589604 PAGE5Q96GU1 130 aa11.75□□□□□ -0.53
VPS4B-204ENST00000589604 FAM20AQ96MK3 541 aa11.75□□□□□ -0.53
VPS4B-204ENST00000589604 DEFB118Q96PH6 123 aa11.75□□□□□ -0.53
VPS4B-204ENST00000589604 PNMA5Q96PV4 448 aa11.75□□□□□ -0.53
VPS4B-204ENST00000589604 MXRA8Q9BRK3 442 aa11.75□□□□□ -0.53
VPS4B-204ENST00000589604 DISC1Q9NRI5 854 aa11.75□□□□□ -0.53
VPS4B-204ENST00000589604 USP25Q9UHP3 1055 aa11.75□□□□□ -0.53
VPS4B-204ENST00000589604 NRBP1Q9UHY1 535 aa11.75□□□□□ -0.53
VPS4B-204ENST00000589604 VAV3Q9UKW4 847 aa11.75□□□□□ -0.53
VPS4B-204ENST00000589604 PCDHA12Q9UN75 941 aa11.75□□□□□ -0.53
VPS4B-204ENST00000589604 KIAA0100Q14667 2235 aaKnown RBP11.74□□□□□ -0.53
VPS4B-204ENST00000589604 MYADML2A6NDP7 307 aa11.74□□□□□ -0.53
VPS4B-204ENST00000589604 SORBS3O60504 671 aa11.74□□□□□ -0.53
VPS4B-204ENST00000589604 ATP9AO75110 1047 aa11.74□□□□□ -0.53
VPS4B-204ENST00000589604 PSMD10O75832 226 aa11.74□□□□□ -0.53
VPS4B-204ENST00000589604 ZNF76P36508 570 aa11.74□□□□□ -0.53
VPS4B-204ENST00000589604 UBA7P41226 1012 aa11.74□□□□□ -0.53
VPS4B-204ENST00000589604 SARSP49591 514 aaKnown RBP11.74□□□□□ -0.53
VPS4B-204ENST00000589604 ECM1Q16610 540 aa11.74□□□□□ -0.53
VPS4B-204ENST00000589604 NT5DC1Q5TFE4 455 aa11.74□□□□□ -0.53
VPS4B-204ENST00000589604 SMYD5Q6GMV2 418 aa11.74□□□□□ -0.53
VPS4B-204ENST00000589604 B3GNT9Q6UX72 402 aa11.74□□□□□ -0.53
VPS4B-204ENST00000589604 NIPA1Q7RTP0 329 aa11.74□□□□□ -0.53
VPS4B-204ENST00000589604 PLA2G4DQ86XP0 818 aa11.74□□□□□ -0.53
VPS4B-204ENST00000589604 SLFN12Q8IYM2 578 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms