RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 MRIQ9BWK5 157 aa5.32□□□□□ -1.56
VPS4B-203ENST00000588323 ZNF408Q9H9D4 720 aa5.32□□□□□ -1.56
VPS4B-203ENST00000588323 ZFP69BQ9UJL9 534 aa5.32□□□□□ -1.56
VPS4B-203ENST00000588323 KNG1P01042 644 aa5.31□□□□□ -1.56
VPS4B-203ENST00000588323 CKMP06732 381 aa5.31□□□□□ -1.56
VPS4B-203ENST00000588323 ENO2P09104 434 aaPredicted RBP5.31□□□□□ -1.56
VPS4B-203ENST00000588323 GNAT1P11488 350 aa5.31□□□□□ -1.56
VPS4B-203ENST00000588323 COL6A2P12110 1019 aa5.31□□□□□ -1.56
VPS4B-203ENST00000588323 FAHP16930 419 aa5.31□□□□□ -1.56
VPS4B-203ENST00000588323 GRK2P25098 689 aa5.31□□□□□ -1.56
VPS4B-203ENST00000588323 GRK3P35626 688 aa5.31□□□□□ -1.56
VPS4B-203ENST00000588323 GLRBP48167 497 aa5.31□□□□□ -1.56
VPS4B-203ENST00000588323 SKIDA1Q1XH10 827 aa5.31□□□□□ -1.56
VPS4B-203ENST00000588323 HS1BP3Q53T59 392 aa5.31□□□□□ -1.56
VPS4B-203ENST00000588323 IFNL2Q8IZJ0 200 aa5.31□□□□□ -1.56
VPS4B-203ENST00000588323 DCAF4Q8WV16 495 aa5.31□□□□□ -1.56
VPS4B-203ENST00000588323 WWC2-AS2Q96NR7 200 aa5.31□□□□□ -1.56
VPS4B-203ENST00000588323 SEC61A2Q9H9S3 476 aa5.31□□□□□ -1.56
VPS4B-203ENST00000588323 ARHGAP20Q9P2F6 1191 aa5.31□□□□□ -1.56
VPS4B-203ENST00000588323 CNOT4O95628 575 aaKnown RBP5.3□□□□□ -1.56
VPS4B-203ENST00000588323 SLPIP03973 132 aa5.3□□□□□ -1.56
VPS4B-203ENST00000588323 ACVRL1P37023 503 aa5.3□□□□□ -1.56
VPS4B-203ENST00000588323 R3HDM1Q15032 1099 aaKnown RBP5.3□□□□□ -1.56
VPS4B-203ENST00000588323 KIZQ2M2Z5 673 aa5.3□□□□□ -1.56
VPS4B-203ENST00000588323 SPDYAQ5MJ70 313 aa5.3□□□□□ -1.56
VPS4B-203ENST00000588323 STPG3Q8N7X2 389 aa5.3□□□□□ -1.56
VPS4B-203ENST00000588323 UHMK1Q8TAS1 419 aaKnown RBP5.3□□□□□ -1.56
VPS4B-203ENST00000588323 Q8TCH9 128 aa5.3□□□□□ -1.56
VPS4B-203ENST00000588323 AJUBAQ96IF1 538 aa5.3□□□□□ -1.56
VPS4B-203ENST00000588323 GNRHR2Q96P88 292 aa5.3□□□□□ -1.56
VPS4B-203ENST00000588323 LMF1Q96S06 567 aa5.3□□□□□ -1.56
VPS4B-203ENST00000588323 KCNJ15Q99712 375 aa5.3□□□□□ -1.56
VPS4B-203ENST00000588323 ST7Q9NRC1 585 aa5.3□□□□□ -1.56
VPS4B-203ENST00000588323 TESMINQ9Y4I5 508 aa5.3□□□□□ -1.56
VPS4B-203ENST00000588323 SLC4A7Q9Y6M7 1214 aa5.3□□□□□ -1.56
VPS4B-203ENST00000588323 IQCA1LA6NCM1 817 aa5.29□□□□□ -1.56
VPS4B-203ENST00000588323 PRODHO43272 600 aa5.29□□□□□ -1.56
VPS4B-203ENST00000588323 LTFP02788 710 aa5.29□□□□□ -1.56
VPS4B-203ENST00000588323 FGRP09769 529 aa5.29□□□□□ -1.56
VPS4B-203ENST00000588323 PFKPQ01813 784 aa5.29□□□□□ -1.56
VPS4B-203ENST00000588323 ARID5AQ03989 594 aa5.29□□□□□ -1.56
VPS4B-203ENST00000588323 CD276Q5ZPR3 534 aa5.29□□□□□ -1.56
VPS4B-203ENST00000588323 LBX2Q6XYB7 198 aa5.29□□□□□ -1.56
VPS4B-203ENST00000588323 GPR155Q7Z3F1 870 aa5.29□□□□□ -1.56
VPS4B-203ENST00000588323 PNPLA5Q7Z6Z6 429 aaPredicted RBP5.29□□□□□ -1.56
VPS4B-203ENST00000588323 GIMAP8Q8ND71 665 aaPredicted RBP5.29□□□□□ -1.56
VPS4B-203ENST00000588323 HNRNPLLQ8WVV9 542 aaKnown RBP5.29□□□□□ -1.56
VPS4B-203ENST00000588323 SGSM3Q96HU1 749 aa5.29□□□□□ -1.56
VPS4B-203ENST00000588323 LRRC37BQ96QE4 947 aa5.29□□□□□ -1.56
VPS4B-203ENST00000588323 ZFYVE21Q9BQ24 234 aa5.29□□□□□ -1.56
VPS4B-203ENST00000588323 AARSD1Q9BTE6 412 aaKnown RBP5.29□□□□□ -1.56
VPS4B-203ENST00000588323 KCND1Q9NSA2 647 aa5.29□□□□□ -1.56
VPS4B-203ENST00000588323 DSEQ9UL01 958 aa5.29□□□□□ -1.56
VPS4B-203ENST00000588323 ZNF839A8K0R7 811 aa5.28□□□□□ -1.56
VPS4B-203ENST00000588323 H0Y858 1186 aa5.28□□□□□ -1.56
VPS4B-203ENST00000588323 NKRFO15226 690 aaKnown RBP eCLIP5.28□□□□□ -1.56
VPS4B-203ENST00000588323 CSF2RBP32927 897 aa5.28□□□□□ -1.56
VPS4B-203ENST00000588323 ZNF568Q3ZCX4 644 aa5.28□□□□□ -1.56
VPS4B-203ENST00000588323 KCNT2Q6UVM3 1135 aa5.28□□□□□ -1.56
VPS4B-203ENST00000588323 REXO1L1PQ8IX06 675 aa5.28□□□□□ -1.56
VPS4B-203ENST00000588323 IFNL3Q8IZI9 196 aa5.28□□□□□ -1.56
VPS4B-203ENST00000588323 CELF2-AS1Q8N7Q2 184 aa5.28□□□□□ -1.56
VPS4B-203ENST00000588323 PDGFDQ9GZP0 370 aaPredicted RBP5.28□□□□□ -1.56
VPS4B-203ENST00000588323 HS3ST3A1Q9Y663 406 aa5.28□□□□□ -1.56
VPS4B-203ENST00000588323 FAM47E-STBD1D6RA91 191 aa5.27□□□□□ -1.57
VPS4B-203ENST00000588323 FGFR1P11362 822 aa5.27□□□□□ -1.57
VPS4B-203ENST00000588323 GPR85P60893 370 aa5.27□□□□□ -1.57
VPS4B-203ENST00000588323 USP10Q14694 798 aaKnown RBP5.27□□□□□ -1.57
VPS4B-203ENST00000588323 DDR2Q16832 855 aa5.27□□□□□ -1.57
VPS4B-203ENST00000588323 KRTAP5-3Q6L8H2 238 aa5.27□□□□□ -1.57
VPS4B-203ENST00000588323 TCTN3Q6NUS6 607 aa5.27□□□□□ -1.57
VPS4B-203ENST00000588323 KCTD1Q719H9 257 aa5.27□□□□□ -1.57
VPS4B-203ENST00000588323 MCF2L2Q86YR7 1114 aa5.27□□□□□ -1.57
VPS4B-203ENST00000588323 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.27□□□□□ -1.57
VPS4B-203ENST00000588323 TACO1Q9BSH4 297 aaKnown RBP5.27□□□□□ -1.57
VPS4B-203ENST00000588323 ZNF341Q9BYN7 854 aa5.27□□□□□ -1.57
VPS4B-203ENST00000588323 KATNBL1Q9H079 304 aa5.27□□□□□ -1.57
VPS4B-203ENST00000588323 TELO2Q9Y4R8 837 aa5.27□□□□□ -1.57
VPS4B-203ENST00000588323 FOXS1O43638 330 aa5.26□□□□□ -1.57
VPS4B-203ENST00000588323 SOD2P04179 222 aa5.26□□□□□ -1.57
VPS4B-203ENST00000588323 PABPC1P11940 636 aaKnown RBP5.26□□□□□ -1.57
VPS4B-203ENST00000588323 EPHA5P54756 1037 aa5.26□□□□□ -1.57
VPS4B-203ENST00000588323 IFRD2Q12894 506 aaPredicted RBP5.26□□□□□ -1.57
VPS4B-203ENST00000588323 PRKD1Q15139 912 aaPredicted RBP5.26□□□□□ -1.57
VPS4B-203ENST00000588323 NTRK3Q16288 839 aa5.26□□□□□ -1.57
VPS4B-203ENST00000588323 HABP4Q5JVS0 413 aaKnown RBP5.26□□□□□ -1.57
VPS4B-203ENST00000588323 NSMFQ6X4W1 530 aa5.26□□□□□ -1.57
VPS4B-203ENST00000588323 ANKS3Q6ZW76 656 aa5.26□□□□□ -1.57
VPS4B-203ENST00000588323 PCED1AQ9H1Q7 454 aa5.26□□□□□ -1.57
VPS4B-203ENST00000588323 ARHGEF4Q9NR80 690 aa5.26□□□□□ -1.57
VPS4B-203ENST00000588323 ZFR2Q9UPR6 939 aaKnown RBP5.26□□□□□ -1.57
VPS4B-203ENST00000588323 TRAV20A0A0B4J274 112 aa5.25□□□□□ -1.57
VPS4B-203ENST00000588323 BLACEA4D250 179 aa5.25□□□□□ -1.57
VPS4B-203ENST00000588323 ACOT7O00154 380 aa5.25□□□□□ -1.57
VPS4B-203ENST00000588323 TCF3P15923 654 aa5.25□□□□□ -1.57
VPS4B-203ENST00000588323 DNAJA1P31689 397 aaKnown RBP5.25□□□□□ -1.57
VPS4B-203ENST00000588323 RANGAP1P46060 587 aaPredicted RBP5.25□□□□□ -1.57
VPS4B-203ENST00000588323 STYK1Q6J9G0 422 aa5.25□□□□□ -1.57
VPS4B-203ENST00000588323 DPH6Q7L8W6 267 aa5.25□□□□□ -1.57
VPS4B-203ENST00000588323 TAX1BP1Q86VP1 789 aa5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms