RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 CRYGNQ8WXF5 182 aa27.22■■□□□ 1.95
SHMT1-206ENST00000579558 VWCEQ96DN2 955 aa27.22■■□□□ 1.95
SHMT1-206ENST00000579558 SLC9A2Q9UBY0 812 aa27.22■■□□□ 1.95
SHMT1-206ENST00000579558 FAM86B1E9PN63 330 aa27.21■■□□□ 1.95
SHMT1-206ENST00000579558 FAM86B2P0C5J1 330 aa27.21■■□□□ 1.95
SHMT1-206ENST00000579558 SELPP16109 830 aa27.21■■□□□ 1.95
SHMT1-206ENST00000579558 RBL2Q08999 1139 aa27.21■■□□□ 1.95
SHMT1-206ENST00000579558 ZNF697Q5TEC3 545 aa27.21■■□□□ 1.95
SHMT1-206ENST00000579558 LRRC8DQ7L1W4 858 aa27.21■■□□□ 1.95
SHMT1-206ENST00000579558 PLA2G4DQ86XP0 818 aa27.21■■□□□ 1.95
SHMT1-206ENST00000579558 ATP6V0A1Q93050 837 aa27.21■■□□□ 1.95
SHMT1-206ENST00000579558 CXXC1Q9P0U4 656 aaPredicted RBP27.21■■□□□ 1.95
SHMT1-206ENST00000579558 CKBP12277 381 aa27.2■■□□□ 1.94
SHMT1-206ENST00000579558 HOXC8P31273 242 aa27.2■■□□□ 1.94
SHMT1-206ENST00000579558 NEK4P51957 841 aa27.2■■□□□ 1.94
SHMT1-206ENST00000579558 ITGB3BPQ13352 177 aaPredicted RBP27.2■■□□□ 1.94
SHMT1-206ENST00000579558 WNT8BQ93098 351 aa27.2■■□□□ 1.94
SHMT1-206ENST00000579558 AIFM3Q96NN9 605 aa27.2■■□□□ 1.94
SHMT1-206ENST00000579558 RNPEPQ9H4A4 650 aa27.2■■□□□ 1.94
SHMT1-206ENST00000579558 GNAT1P11488 350 aa27.19■■□□□ 1.94
SHMT1-206ENST00000579558 TRIM71Q2Q1W2 868 aaKnown RBP27.19■■□□□ 1.94
SHMT1-206ENST00000579558 C8orf34Q49A92 452 aa27.19■■□□□ 1.94
SHMT1-206ENST00000579558 SERINC5Q86VE9 423 aa27.19■■□□□ 1.94
SHMT1-206ENST00000579558 GLG1Q92896 1179 aa27.19■■□□□ 1.94
SHMT1-206ENST00000579558 FTOQ9C0B1 505 aaKnown RBP eCLIP27.19■■□□□ 1.94
SHMT1-206ENST00000579558 SETD4Q9NVD3 440 aa27.19■■□□□ 1.94
SHMT1-206ENST00000579558 MTMR10Q9NXD2 777 aa27.19■■□□□ 1.94
SHMT1-206ENST00000579558 PCDHA4Q9UN74 947 aa27.19■■□□□ 1.94
SHMT1-206ENST00000579558 IGLV3-22A0A075B6J6 115 aa27.18■■□□□ 1.94
SHMT1-206ENST00000579558 ZBBXA8MT70 800 aa27.18■■□□□ 1.94
SHMT1-206ENST00000579558 FAM177A1Q8N128 213 aaPredicted RBP27.18■■□□□ 1.94
SHMT1-206ENST00000579558 SMARCAD1Q9H4L7 1026 aa27.18■■□□□ 1.94
SHMT1-206ENST00000579558 ERAP1Q9NZ08 941 aa27.18■■□□□ 1.94
SHMT1-206ENST00000579558 EMSYQ7Z589 1322 aa27.17■■□□□ 1.94
SHMT1-206ENST00000579558 STK36Q9NRP7 1315 aa27.17■■□□□ 1.94
SHMT1-206ENST00000579558 TREHO43280 583 aa27.17■■□□□ 1.94
SHMT1-206ENST00000579558 ACTN1P12814 892 aa27.17■■□□□ 1.94
SHMT1-206ENST00000579558 MARK3P27448 753 aa27.17■■□□□ 1.94
SHMT1-206ENST00000579558 ACTR2P61160 394 aa27.17■■□□□ 1.94
SHMT1-206ENST00000579558 SETQ01105 290 aaPredicted RBP27.17■■□□□ 1.94
SHMT1-206ENST00000579558 FAM161BQ96MY7 647 aa27.17■■□□□ 1.94
SHMT1-206ENST00000579558 GRXCR1A8MXD5 290 aa27.16■■□□□ 1.94
SHMT1-206ENST00000579558 DDX39AO00148 427 aaKnown RBP27.16■■□□□ 1.94
SHMT1-206ENST00000579558 LGR5O75473 907 aa27.16■■□□□ 1.94
SHMT1-206ENST00000579558 PARNO95453 639 aaKnown RBP27.16■■□□□ 1.94
SHMT1-206ENST00000579558 DNAJB2P25686 324 aa27.16■■□□□ 1.94
SHMT1-206ENST00000579558 ME3Q16798 604 aa27.16■■□□□ 1.94
SHMT1-206ENST00000579558 ZNF618Q5T7W0 954 aa27.16■■□□□ 1.94
SHMT1-206ENST00000579558 BLIDQ8IZY5 108 aa27.16■■□□□ 1.94
SHMT1-206ENST00000579558 LMBR1Q8WVP7 490 aa27.16■■□□□ 1.94
SHMT1-206ENST00000579558 AZI2Q9H6S1 392 aa27.16■■□□□ 1.94
SHMT1-206ENST00000579558 SLC4A7Q9Y6M7 1214 aa27.16■■□□□ 1.94
SHMT1-206ENST00000579558 NRCAMQ92823 1304 aa27.16■■□□□ 1.94
SHMT1-206ENST00000579558 COL6A3P12111 3177 aa27.15■■□□□ 1.94
SHMT1-206ENST00000579558 IPO5O00410 1097 aaKnown RBP27.15■■□□□ 1.94
SHMT1-206ENST00000579558 DTNBO60941 627 aa27.15■■□□□ 1.94
SHMT1-206ENST00000579558 LARGE1O95461 756 aa27.15■■□□□ 1.94
SHMT1-206ENST00000579558 CIITAP33076 1130 aa27.15■■□□□ 1.94
SHMT1-206ENST00000579558 THPOP40225 353 aa27.15■■□□□ 1.94
SHMT1-206ENST00000579558 PRR16Q569H4 304 aa27.15■■□□□ 1.94
SHMT1-206ENST00000579558 GALNT17Q6IS24 598 aa27.15■■□□□ 1.94
SHMT1-206ENST00000579558 NECAB1Q8N987 351 aa27.15■■□□□ 1.94
SHMT1-206ENST00000579558 DAGLBQ8NCG7 672 aa27.15■■□□□ 1.94
SHMT1-206ENST00000579558 UIMC1Q96RL1 719 aa27.15■■□□□ 1.94
SHMT1-206ENST00000579558 PCYT2Q99447 389 aa27.15■■□□□ 1.94
SHMT1-206ENST00000579558 ZNF577Q9BSK1 485 aa27.15■■□□□ 1.94
SHMT1-206ENST00000579558 C22orf23Q9BZE7 217 aa27.15■■□□□ 1.94
SHMT1-206ENST00000579558 KAT6AQ92794 2004 aa27.15■■□□□ 1.94
SHMT1-206ENST00000579558 TET1Q8NFU7 2136 aa27.14■■□□□ 1.94
SHMT1-206ENST00000579558 CTDNEP1O95476 244 aa27.14■■□□□ 1.94
SHMT1-206ENST00000579558 PPFIA1Q13136 1202 aa27.14■■□□□ 1.94
SHMT1-206ENST00000579558 GPNMBQ14956 572 aa27.14■■□□□ 1.94
SHMT1-206ENST00000579558 GTF3C6Q969F1 213 aa27.14■■□□□ 1.94
SHMT1-206ENST00000579558 XBP1P17861 261 aa27.13■■□□□ 1.93
SHMT1-206ENST00000579558 ADAM17P78536 824 aa27.13■■□□□ 1.93
SHMT1-206ENST00000579558 NPY5RQ15761 445 aa27.13■■□□□ 1.93
SHMT1-206ENST00000579558 TRAF7Q6Q0C0 670 aa27.13■■□□□ 1.93
SHMT1-206ENST00000579558 TBCKQ8TEA7 893 aa27.13■■□□□ 1.93
SHMT1-206ENST00000579558 PBX4Q9BYU1 374 aa27.13■■□□□ 1.93
SHMT1-206ENST00000579558 SEMA6BQ9H3T3 888 aa27.13■■□□□ 1.93
SHMT1-206ENST00000579558 ORC3Q9UBD5 711 aaPredicted RBP27.13■■□□□ 1.93
SHMT1-206ENST00000579558 KCNJ14Q9UNX9 436 aa27.13■■□□□ 1.93
SHMT1-206ENST00000579558 TMEM265A0A087WTH1 108 aa27.12■■□□□ 1.93
SHMT1-206ENST00000579558 M0R2N6 131 aa27.12■■□□□ 1.93
SHMT1-206ENST00000579558 DHX15O43143 795 aaKnown RBP27.12■■□□□ 1.93
SHMT1-206ENST00000579558 NBNO60934 754 aa27.12■■□□□ 1.93
SHMT1-206ENST00000579558 ATG7O95352 703 aa27.12■■□□□ 1.93
SHMT1-206ENST00000579558 CCNE2O96020 404 aa27.12■■□□□ 1.93
SHMT1-206ENST00000579558 PBX2P40425 430 aa27.12■■□□□ 1.93
SHMT1-206ENST00000579558 USP11P51784 963 aa27.12■■□□□ 1.93
SHMT1-206ENST00000579558 GRIK4Q16099 956 aa27.12■■□□□ 1.93
SHMT1-206ENST00000579558 TIFAQ96CG3 184 aa27.12■■□□□ 1.93
SHMT1-206ENST00000579558 TTYH1Q9H313 450 aaPredicted RBP27.12■■□□□ 1.93
SHMT1-206ENST00000579558 TBC1D22BQ9NU19 505 aa27.12■■□□□ 1.93
SHMT1-206ENST00000579558 RSPH10B2B2RC85 870 aa27.11■■□□□ 1.93
SHMT1-206ENST00000579558 EDIL3O43854 480 aa27.11■■□□□ 1.93
SHMT1-206ENST00000579558 CXCL10P02778 98 aa27.11■■□□□ 1.93
SHMT1-206ENST00000579558 RSPH10BP0C881 870 aa27.11■■□□□ 1.93
SHMT1-206ENST00000579558 STAT5BP51692 787 aa27.11■■□□□ 1.93
SHMT1-206ENST00000579558 RAB30Q15771 203 aa27.11■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms