RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 KHSRPQ92945 711 aaKnown RBP eCLIP11.56□□□□□ -0.563e-7■■■■□ 20.8
SS18-210ENST00000578700 TANC1Q9C0D5 1861 aa11.56□□□□□ -0.56
SS18-210ENST00000578700 FOXP1Q9H334 677 aaPredicted RBP11.56□□□□□ -0.56
SS18-210ENST00000578700 SEC63Q9UGP8 760 aaKnown RBP11.56□□□□□ -0.56
SS18-210ENST00000578700 MTUS1Q9ULD2 1270 aa11.56□□□□□ -0.56
SS18-210ENST00000578700 WDFY4Q6ZS81 3184 aa11.56□□□□□ -0.56
SS18-210ENST00000578700 FRMPD2Q68DX3 1309 aaPredicted RBP11.56□□□□□ -0.56
SS18-210ENST00000578700 MUC6Q6W4X9 2439 aa11.56□□□□□ -0.56
SS18-210ENST00000578700 TET1Q8NFU7 2136 aa11.56□□□□□ -0.56
SS18-210ENST00000578700 SCN10AQ9Y5Y9 1956 aa11.56□□□□□ -0.56
SS18-210ENST00000578700 KLRF2D3W0D1 207 aa11.55□□□□□ -0.56
SS18-210ENST00000578700 RBAK-RBAKDNI3L0D1 243 aa11.55□□□□□ -0.56
SS18-210ENST00000578700 PLA2G6O60733 806 aa11.55□□□□□ -0.56
SS18-210ENST00000578700 GADD45BO75293 160 aaPredicted RBP11.55□□□□□ -0.56
SS18-210ENST00000578700 YEATS4O95619 227 aa11.55□□□□□ -0.56
SS18-210ENST00000578700 SCG2P13521 617 aa11.55□□□□□ -0.56
SS18-210ENST00000578700 U2AF2P26368 475 aaKnown RBP eCLIP11.55□□□□□ -0.561e-7■■■□□ 18
SS18-210ENST00000578700 SMARCA1P28370 1054 aa11.55□□□□□ -0.56
SS18-210ENST00000578700 RFC2P35250 354 aa11.55□□□□□ -0.56
SS18-210ENST00000578700 KRT2P35908 639 aa11.55□□□□□ -0.56
SS18-210ENST00000578700 ME1P48163 572 aa11.55□□□□□ -0.56
SS18-210ENST00000578700 BFSP2Q13515 415 aa11.55□□□□□ -0.56
SS18-210ENST00000578700 TPRNQ4KMQ1 711 aa11.55□□□□□ -0.56
SS18-210ENST00000578700 ASPRV1Q53RT3 343 aa11.55□□□□□ -0.56
SS18-210ENST00000578700 RILPL1Q5EBL4 403 aa11.55□□□□□ -0.56
SS18-210ENST00000578700 NOSTRINQ8IVI9 506 aa11.55□□□□□ -0.56
SS18-210ENST00000578700 DIS3L2Q8IYB7 885 aaKnown RBP11.55□□□□□ -0.56
SS18-210ENST00000578700 CCDC148Q8NFR7 591 aa11.55□□□□□ -0.56
SS18-210ENST00000578700 MORC4Q8TE76 937 aa11.55□□□□□ -0.56
SS18-210ENST00000578700 GDPD5Q8WTR4 605 aa11.55□□□□□ -0.56
SS18-210ENST00000578700 RRP36Q96EU6 259 aaKnown RBP11.55□□□□□ -0.56
SS18-210ENST00000578700 AIFM3Q96NN9 605 aa11.55□□□□□ -0.56
SS18-210ENST00000578700 SH3GLB2Q9NR46 395 aa11.55□□□□□ -0.56
SS18-210ENST00000578700 RTEL1Q9NZ71 1219 aa11.55□□□□□ -0.56
SS18-210ENST00000578700 RCOR1Q9UKL0 485 aa11.55□□□□□ -0.56
SS18-210ENST00000578700 NOL7Q9UMY1 257 aaKnown RBP11.55□□□□□ -0.56
SS18-210ENST00000578700 CEP131Q9UPN4 1083 aa11.55□□□□□ -0.56
SS18-210ENST00000578700 ARIH1Q9Y4X5 557 aaPredicted RBP11.55□□□□□ -0.56
SS18-210ENST00000578700 CNTNAP5Q8WYK1 1306 aa11.55□□□□□ -0.56
SS18-210ENST00000578700 LCHNA4D1U4 455 aa11.54□□□□□ -0.56
SS18-210ENST00000578700 TXNP10599 105 aaKnown RBP11.54□□□□□ -0.56
SS18-210ENST00000578700 DEKP35659 375 aaKnown RBP11.54□□□□□ -0.56
SS18-210ENST00000578700 NLRP5P59047 1200 aa11.54□□□□□ -0.56
SS18-210ENST00000578700 FUT2Q10981 343 aa11.54□□□□□ -0.56
SS18-210ENST00000578700 PTGISQ16647 500 aa11.54□□□□□ -0.56
SS18-210ENST00000578700 PFKFB3Q16875 520 aaPredicted RBP11.54□□□□□ -0.56
SS18-210ENST00000578700 GPATCH4Q5T3I0 446 aaKnown RBP11.54□□□□□ -0.56
SS18-210ENST00000578700 CCDC183Q5T5S1 534 aa11.54□□□□□ -0.56
SS18-210ENST00000578700 SYDE2Q5VT97 1194 aa11.54□□□□□ -0.56
SS18-210ENST00000578700 FAM117BQ6P1L5 589 aa11.54□□□□□ -0.56
SS18-210ENST00000578700 NFRKBQ6P4R8 1299 aa11.54□□□□□ -0.56
SS18-210ENST00000578700 SLC30A10Q6XR72 485 aa11.54□□□□□ -0.56
SS18-210ENST00000578700 RNF207Q6ZRF8 634 aa11.54□□□□□ -0.56
SS18-210ENST00000578700 CCDC73Q6ZRK6 1079 aa11.54□□□□□ -0.56
SS18-210ENST00000578700 SRBD1Q8N5C6 995 aaKnown RBP11.54□□□□□ -0.56
SS18-210ENST00000578700 UIMC1Q96RL1 719 aa11.54□□□□□ -0.56
SS18-210ENST00000578700 SPZ1Q9BXG8 430 aa11.54□□□□□ -0.56
SS18-210ENST00000578700 RANBP17Q9H2T7 1088 aaKnown RBP11.54□□□□□ -0.56
SS18-210ENST00000578700 MAD2L2Q9UI95 211 aa11.54□□□□□ -0.56
SS18-210ENST00000578700 PTPRSQ13332 1948 aa11.54□□□□□ -0.56
SS18-210ENST00000578700 RBM47A0AV96 593 aaKnown RBP11.53□□□□□ -0.56
SS18-210ENST00000578700 PALM3A6NDB9 673 aaPredicted RBP11.53□□□□□ -0.56
SS18-210ENST00000578700 hCG_1984214I3L0E3 225 aa11.53□□□□□ -0.56
SS18-210ENST00000578700 PITPNM1O00562 1244 aa11.53□□□□□ -0.56
SS18-210ENST00000578700 KPNA6O60684 536 aa11.53□□□□□ -0.56
SS18-210ENST00000578700 NOVP48745 357 aa11.53□□□□□ -0.56
SS18-210ENST00000578700 ZSCAN23Q3MJ62 389 aa11.53□□□□□ -0.56
SS18-210ENST00000578700 GALNT17Q6IS24 598 aa11.53□□□□□ -0.56
SS18-210ENST00000578700 ALYREFQ86V81 257 aaKnown RBP11.53□□□□□ -0.56
SS18-210ENST00000578700 ZNF713Q8N859 430 aaPredicted RBP11.53□□□□□ -0.56
SS18-210ENST00000578700 DCAF4Q8WV16 495 aa11.53□□□□□ -0.56
SS18-210ENST00000578700 USP28Q96RU2 1077 aa11.53□□□□□ -0.56
SS18-210ENST00000578700 MPHOSPH6Q99547 160 aaKnown RBP11.53□□□□□ -0.56
SS18-210ENST00000578700 CD320Q9NPF0 282 aa11.53□□□□□ -0.56
SS18-210ENST00000578700 GJB4Q9NTQ9 266 aa11.53□□□□□ -0.56
SS18-210ENST00000578700 VPS54Q9P1Q0 977 aa11.53□□□□□ -0.56
SS18-210ENST00000578700 KCNJ14Q9UNX9 436 aa11.53□□□□□ -0.56
SS18-210ENST00000578700 BTBD18B2RXH4 712 aa11.52□□□□□ -0.57
SS18-210ENST00000578700 NKRFO15226 690 aaKnown RBP eCLIP11.52□□□□□ -0.57
SS18-210ENST00000578700 SPTLC2O15270 562 aa11.52□□□□□ -0.57
SS18-210ENST00000578700 LPXNO60711 386 aa11.52□□□□□ -0.57
SS18-210ENST00000578700 GPR37L1O60883 481 aa11.52□□□□□ -0.57
SS18-210ENST00000578700 BAIAP3O94812 1187 aa11.52□□□□□ -0.57
SS18-210ENST00000578700 BMP15O95972 392 aa11.52□□□□□ -0.57
SS18-210ENST00000578700 SSTR3P32745 418 aaPredicted RBP11.52□□□□□ -0.57
SS18-210ENST00000578700 ZNF445P59923 1031 aa11.52□□□□□ -0.57
SS18-210ENST00000578700 WDR5P61964 334 aaKnown RBP11.52□□□□□ -0.57
SS18-210ENST00000578700 RPS6P62753 249 aaKnown RBP11.52□□□□□ -0.57
SS18-210ENST00000578700 DEFB103AP81534 67 aa11.52□□□□□ -0.57
SS18-210ENST00000578700 PKN1Q16512 942 aa11.52□□□□□ -0.57
SS18-210ENST00000578700 SEPT14Q6ZU15 432 aa11.52□□□□□ -0.57
SS18-210ENST00000578700 HEATR3Q7Z4Q2 680 aa11.52□□□□□ -0.57
SS18-210ENST00000578700 CCDC155Q8N6L0 562 aa11.52□□□□□ -0.57
SS18-210ENST00000578700 SCFD2Q8WU76 684 aa11.52□□□□□ -0.57
SS18-210ENST00000578700 CLEC4DQ8WXI8 215 aa11.52□□□□□ -0.57
SS18-210ENST00000578700 PIBF1Q8WXW3 757 aa11.52□□□□□ -0.57
SS18-210ENST00000578700 PHF20Q9BVI0 1012 aa11.52□□□□□ -0.57
SS18-210ENST00000578700 DDX19AQ9NUU7 478 aaKnown RBP11.52□□□□□ -0.57
SS18-210ENST00000578700 COL4A4P53420 1690 aaPredicted RBP11.52□□□□□ -0.57
SS18-210ENST00000578700 hCG_1642624A0A1W2PR95 340 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms