RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 GNASQ5JWF2 1037 aa9.67□□□□□ -0.86
NUP88-211ENST00000575976 CCSAPQ6IQ19 270 aaPredicted RBP9.67□□□□□ -0.86
NUP88-211ENST00000575976 B3GNT9Q6UX72 402 aa9.67□□□□□ -0.86
NUP88-211ENST00000575976 SLFN12Q8IYM2 578 aa9.67□□□□□ -0.86
NUP88-211ENST00000575976 ARRDC4Q8NCT1 418 aa9.67□□□□□ -0.86
NUP88-211ENST00000575976 PPTC7Q8NI37 304 aa9.67□□□□□ -0.86
NUP88-211ENST00000575976 SEPT1Q8WYJ6 367 aa9.67□□□□□ -0.86
NUP88-211ENST00000575976 CHAMP1Q96JM3 812 aa9.67□□□□□ -0.86
NUP88-211ENST00000575976 ZNF396Q96N95 335 aaPredicted RBP9.67□□□□□ -0.86
NUP88-211ENST00000575976 UNC45AQ9H3U1 944 aa9.67□□□□□ -0.86
NUP88-211ENST00000575976 CHMP5Q9NZZ3 219 aa9.67□□□□□ -0.86
NUP88-211ENST00000575976 VAV3Q9UKW4 847 aa9.67□□□□□ -0.86
NUP88-211ENST00000575976 CIZ1Q9ULV3 898 aaPredicted RBP9.67□□□□□ -0.86
NUP88-211ENST00000575976 PCDHA12Q9UN75 941 aa9.67□□□□□ -0.86
NUP88-211ENST00000575976 HTTP42858 3142 aa9.67□□□□□ -0.86
NUP88-211ENST00000575976 COL6A3P12111 3177 aa9.67□□□□□ -0.86
NUP88-211ENST00000575976 CENPFP49454 3210 aa9.66□□□□□ -0.86
NUP88-211ENST00000575976 ELP1O95163 1332 aa9.66□□□□□ -0.86
NUP88-211ENST00000575976 H0YGN5 161 aa9.66□□□□□ -0.86
NUP88-211ENST00000575976 EML1O00423 815 aa9.66□□□□□ -0.86
NUP88-211ENST00000575976 DNM1LO00429 736 aa9.66□□□□□ -0.86
NUP88-211ENST00000575976 CHMP2AO43633 222 aa9.66□□□□□ -0.86
NUP88-211ENST00000575976 PPFIA4O75335 1185 aa9.66□□□□□ -0.86
NUP88-211ENST00000575976 ATG7O95352 703 aa9.66□□□□□ -0.86
NUP88-211ENST00000575976 ASGR1P07306 291 aa9.66□□□□□ -0.86
NUP88-211ENST00000575976 MYL3P08590 195 aa9.66□□□□□ -0.86
NUP88-211ENST00000575976 TCF7P36402 384 aaPredicted RBP9.66□□□□□ -0.86
NUP88-211ENST00000575976 TECP42680 631 aa9.66□□□□□ -0.86
NUP88-211ENST00000575976 ATP2C1P98194 919 aaPredicted RBP9.66□□□□□ -0.86
NUP88-211ENST00000575976 KRT76Q01546 638 aa9.66□□□□□ -0.86
NUP88-211ENST00000575976 DNM1Q05193 864 aaKnown RBP9.66□□□□□ -0.86
NUP88-211ENST00000575976 PTPAQ15257 358 aa9.66□□□□□ -0.86
NUP88-211ENST00000575976 IL17AQ16552 155 aa9.66□□□□□ -0.86
NUP88-211ENST00000575976 BRDTQ58F21 947 aaPredicted RBP9.66□□□□□ -0.86
NUP88-211ENST00000575976 UTP14CQ5TAP6 766 aaKnown RBP9.66□□□□□ -0.86
NUP88-211ENST00000575976 ZNF746Q6NUN9 644 aaPredicted RBP9.66□□□□□ -0.86
NUP88-211ENST00000575976 ABHD15Q6UXT9 468 aa9.66□□□□□ -0.86
NUP88-211ENST00000575976 CHRDL2Q6WN34 429 aa9.66□□□□□ -0.86
NUP88-211ENST00000575976 PCSK9Q8NBP7 692 aaKnown RBP9.66□□□□□ -0.86
NUP88-211ENST00000575976 TTC12Q9H892 705 aaPredicted RBP9.66□□□□□ -0.86
NUP88-211ENST00000575976 TCEAL9Q9UHQ7 104 aa9.66□□□□□ -0.86
NUP88-211ENST00000575976 CEP131Q9UPN4 1083 aa9.66□□□□□ -0.86
NUP88-211ENST00000575976 CEP290O15078 2479 aa9.65□□□□□ -0.86
NUP88-211ENST00000575976 MOXD2PA6NHM9 499 aa9.65□□□□□ -0.86
NUP88-211ENST00000575976 KBTBD13C9JR72 458 aa9.65□□□□□ -0.86
NUP88-211ENST00000575976 LAD1O00515 517 aa9.65□□□□□ -0.86
NUP88-211ENST00000575976 ZEB2O60315 1214 aa9.65□□□□□ -0.86
NUP88-211ENST00000575976 BMP15O95972 392 aa9.65□□□□□ -0.86
NUP88-211ENST00000575976 SUPT20HL2P0C7V6 817 aa9.65□□□□□ -0.86
NUP88-211ENST00000575976 HOXD8P13378 290 aaPredicted RBP9.65□□□□□ -0.86
NUP88-211ENST00000575976 CAPN2P17655 700 aa9.65□□□□□ -0.86
NUP88-211ENST00000575976 PRPHP41219 470 aa9.65□□□□□ -0.86
NUP88-211ENST00000575976 NASPP49321 788 aaPredicted RBP9.65□□□□□ -0.86
NUP88-211ENST00000575976 ACLYP53396 1101 aa9.65□□□□□ -0.86
NUP88-211ENST00000575976 PURAQ00577 322 aaKnown RBP9.65□□□□□ -0.86
NUP88-211ENST00000575976 SPIRE1Q08AE8 756 aa9.65□□□□□ -0.86
NUP88-211ENST00000575976 PPP2R5CQ13362 524 aa9.65□□□□□ -0.86
NUP88-211ENST00000575976 DGKDQ16760 1214 aa9.65□□□□□ -0.86
NUP88-211ENST00000575976 NCAPH2Q6IBW4 605 aa9.65□□□□□ -0.86
NUP88-211ENST00000575976 MIS18BP1Q6P0N0 1132 aa9.65□□□□□ -0.86
NUP88-211ENST00000575976 CXCL17Q6UXB2 119 aa9.65□□□□□ -0.86
NUP88-211ENST00000575976 DTHD1Q6ZMT9 781 aa9.65□□□□□ -0.86
NUP88-211ENST00000575976 MIER3Q7Z3K6 550 aa9.65□□□□□ -0.86
NUP88-211ENST00000575976 ANKLE1Q8NAG6 615 aa9.65□□□□□ -0.86
NUP88-211ENST00000575976 LINC00301Q8NCQ3 95 aa9.65□□□□□ -0.86
NUP88-211ENST00000575976 DIS3LQ8TF46 1054 aaKnown RBP9.65□□□□□ -0.86
NUP88-211ENST00000575976 FERMT2Q96AC1 680 aa9.65□□□□□ -0.86
NUP88-211ENST00000575976 PCYT2Q99447 389 aa9.65□□□□□ -0.86
NUP88-211ENST00000575976 C16orf70Q9BSU1 422 aa9.65□□□□□ -0.86
NUP88-211ENST00000575976 TSEN34Q9BSV6 310 aaKnown RBP9.65□□□□□ -0.86
NUP88-211ENST00000575976 DISC1Q9NRI5 854 aa9.65□□□□□ -0.86
NUP88-211ENST00000575976 POLR3EQ9NVU0 708 aa9.65□□□□□ -0.86
NUP88-211ENST00000575976 PHF24Q9UPV7 400 aa9.65□□□□□ -0.86
NUP88-211ENST00000575976 SAMM50Q9Y512 469 aa9.65□□□□□ -0.86
NUP88-211ENST00000575976 DOCK5Q9H7D0 1870 aa9.65□□□□□ -0.86
NUP88-211ENST00000575976 RANBP2P49792 3224 aaKnown RBP9.64□□□□□ -0.87
NUP88-211ENST00000575976 FRMPD3Q5JV73 1810 aa9.64□□□□□ -0.87
NUP88-211ENST00000575976 IGKV6D-21A0A0A0MT36 114 aa9.64□□□□□ -0.87
NUP88-211ENST00000575976 POTEMA6NI47 508 aa9.64□□□□□ -0.87
NUP88-211ENST00000575976 WDR64B1ANS9 1081 aa9.64□□□□□ -0.87
NUP88-211ENST00000575976 KPNA6O60684 536 aa9.64□□□□□ -0.87
NUP88-211ENST00000575976 LGR5O75473 907 aa9.64□□□□□ -0.87
NUP88-211ENST00000575976 LGALS2P05162 132 aa9.64□□□□□ -0.87
NUP88-211ENST00000575976 PSAPP07602 524 aa9.64□□□□□ -0.87
NUP88-211ENST00000575976 ZNF286BP0CG31 522 aa9.64□□□□□ -0.87
NUP88-211ENST00000575976 MARCKSP29966 332 aaPredicted RBP9.64□□□□□ -0.87
NUP88-211ENST00000575976 SFNP31947 248 aa9.64□□□□□ -0.87
NUP88-211ENST00000575976 FXR2P51116 673 aaKnown RBP eCLIP9.64□□□□□ -0.87
NUP88-211ENST00000575976 JAK3P52333 1124 aa9.64□□□□□ -0.87
NUP88-211ENST00000575976 GRIN1Q05586 938 aa9.64□□□□□ -0.87
NUP88-211ENST00000575976 SLC39A14Q15043 492 aa9.64□□□□□ -0.87
NUP88-211ENST00000575976 STK38Q15208 465 aa9.64□□□□□ -0.87
NUP88-211ENST00000575976 EPHA7Q15375 998 aa9.64□□□□□ -0.87
NUP88-211ENST00000575976 ARL6IP4Q66PJ3 421 aaKnown RBP9.64□□□□□ -0.87
NUP88-211ENST00000575976 ATL3Q6DD88 541 aa9.64□□□□□ -0.87
NUP88-211ENST00000575976 SWSAP1Q6NVH7 229 aa9.64□□□□□ -0.87
NUP88-211ENST00000575976 TRIM50Q86XT4 487 aa9.64□□□□□ -0.87
NUP88-211ENST00000575976 CCDC60Q8IWA6 550 aaPredicted RBP9.64□□□□□ -0.87
NUP88-211ENST00000575976 SMAP1Q8IYB5 467 aaPredicted RBP9.64□□□□□ -0.87
NUP88-211ENST00000575976 RDM1Q8NG50 284 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms